Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Hbb-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2np2_C_DG203_DT204 | A-B | AB04 | 45 | 0.21 |
| 02 | 2np2_C_DT204_DA205 | BBB | BB00 | 73 | 0.26 |
| 03 | 2np2_C_DA205_DT206 | BBB | BB00 | 38 | 0.35 |
| 04 | 2np2_C_DT206_DT207 | BBB | BB00 | 55 | 0.27 |
| 05 | 2np2_C_DT207_DT208 | BBB | BB00 | 64 | 0.30 |
| 06 | 2np2_C_DT208_DA209 | BBB | BB00 | 38 | 0.28 |
| 07 | 2np2_C_DA209_DA210 | BB2 | BB07 | 64 | 0.24 |
| 08 | 2np2_C_DA210_DT211 | BBw | BB02 | 84 | 0.18 |
| 09 | 2np2_C_DT211_DA212 | BBB | BB00 | 64 | 0.26 |
| 10 | 2np2_C_DA212_DC213 | B-A | BA05 | 61 | 0.23 |
| 11 | 2np2_C_DC213_DT214 | AAA | AA02 | 56 | 0.35 |
| 12 | 2np2_C_DT214_DA215 | NAN | NANT | 0 | 0.62 |
| 13 | 2np2_C_DA215_DT216 | NAN | NANT | 0 | 0.65 |
| 14 | 2np2_C_DT216_DA217 | NAN | NANT | 0 | 0.40 |
| 15 | 2np2_C_DA217_DT218 | NAN | NANT | 0 | 0.35 |
| 16 | 2np2_C_DT218_DG219 | A-B | AB01 | 13 | 0.23 |
| 17 | 2np2_C_DG219_DT220 | BB2 | BB07 | 55 | 0.47 |
| 18 | 2np2_C_DT220_DC221 | BBB | BB00 | 49 | 0.31 |
| 19 | 2np2_C_DC221_DA222 | B12 | BB04 | 54 | 0.26 |
| 20 | 2np2_C_DA222_DT223 | NAN | NANT | 0 | 0.32 |
| 21 | 2np2_C_DT223_DA224 | NAN | NANT | 0 | 0.47 |
| 22 | 2np2_C_DA224_DT225 | NAN | NANT | 0 | 0.61 |
| 23 | 2np2_C_DT225_DA226 | A-B | AB01 | 15 | 0.20 |
| 24 | 2np2_C_DA226_DG227 | B12 | BB04 | 30 | 0.22 |
| 25 | 2np2_C_DG227_DT228 | BBB | BB00 | 53 | 0.39 |
| 26 | 2np2_C_DT228_DA229 | BBB | BB00 | 62 | 0.26 |
| 27 | 2np2_C_DA229_DT230 | BBw | BB02 | 69 | 0.28 |
| 28 | 2np2_C_DT230_DT231 | BBB | BB00 | 24 | 0.38 |
| 29 | 2np2_C_DT231_DA232 | BB2 | BB07 | 60 | 0.23 |
| 30 | 2np2_C_DA232_DA233 | BBB | BB00 | 20 | 0.32 |
| 31 | 2np2_C_DA233_DA234 | BB2 | BB07 | 53 | 0.24 |
| 32 | 2np2_C_DA234_DT235 | B-A | BA05 | 77 | 0.18 |
| 33 | 2np2_C_DT235_DA236 | A-B | AB01 | 25 | 0.19 |
| 34 | 2np2_C_DA236_DC237 | B-A | BA05 | 43 | 0.30 |
| 35 | 2np2_D_DG203_DT204 | A-B | AB04 | 58 | 0.18 |
| 36 | 2np2_D_DT204_DA205 | BBB | BB00 | 73 | 0.27 |
| 37 | 2np2_D_DA205_DT206 | BBB | BB00 | 41 | 0.35 |
| 38 | 2np2_D_DT206_DT207 | BBB | BB00 | 55 | 0.27 |
| 39 | 2np2_D_DT207_DT208 | BBB | BB00 | 65 | 0.30 |
| 40 | 2np2_D_DT208_DA209 | BBB | BB00 | 42 | 0.28 |
| 41 | 2np2_D_DA209_DA210 | BB2 | BB07 | 69 | 0.21 |
| 42 | 2np2_D_DA210_DT211 | BBw | BB02 | 84 | 0.18 |
| 43 | 2np2_D_DT211_DA212 | BBB | BB00 | 62 | 0.26 |
| 44 | 2np2_D_DA212_DC213 | B-A | BA05 | 61 | 0.23 |
| 45 | 2np2_D_DC213_DT214 | AAA | AA02 | 54 | 0.35 |
| 46 | 2np2_D_DT214_DA215 | NAN | NANT | 0 | 0.62 |
| 47 | 2np2_D_DA215_DT216 | NAN | NANT | 0 | 0.65 |
| 48 | 2np2_D_DT216_DA217 | NAN | NANT | 0 | 0.40 |
| 49 | 2np2_D_DA217_DT218 | NAN | NANT | 0 | 0.35 |
| 50 | 2np2_D_DT218_DG219 | A-B | AB01 | 10 | 0.23 |
| 51 | 2np2_D_DG219_DT220 | BB2 | BB07 | 46 | 0.46 |
| 52 | 2np2_D_DT220_DC221 | BBB | BB00 | 37 | 0.39 |
| 53 | 2np2_D_DC221_DA222 | B12 | BB04 | 58 | 0.25 |
| 54 | 2np2_D_DA222_DT223 | NAN | NANT | 0 | 0.32 |
| 55 | 2np2_D_DT223_DA224 | AAA | AA02 | 47 | 0.20 |
| 56 | 2np2_D_DA224_DT225 | NAN | NANT | 0 | 0.39 |
| 57 | 2np2_D_DT225_DA226 | A-B | AB01 | 18 | 0.21 |
| 58 | 2np2_D_DA226_DG227 | B12 | BB04 | 27 | 0.22 |
| 59 | 2np2_D_DG227_DT228 | BBB | BB00 | 54 | 0.39 |
| 60 | 2np2_D_DT228_DA229 | BBB | BB00 | 64 | 0.26 |
| 61 | 2np2_D_DA229_DT230 | BBw | BB02 | 69 | 0.26 |
| 62 | 2np2_D_DT230_DT231 | BBB | BB00 | 24 | 0.33 |
| 63 | 2np2_D_DT231_DA232 | BB2 | BB07 | 59 | 0.24 |
| 64 | 2np2_D_DA232_DA233 | BBB | BB00 | 22 | 0.32 |
| 65 | 2np2_D_DA233_DA234 | BB2 | BB07 | 55 | 0.24 |
| 66 | 2np2_D_DA234_DT235 | B-A | BA05 | 77 | 0.17 |
| 67 | 2np2_D_DT235_DA236 | A-B | AB01 | 22 | 0.19 |
| 68 | 2np2_D_DA236_DC237 | B-A | BA01 | 14 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|