Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2nob_B_DG2_DG3 | B12 | BB04 | 77 | 0.31 |
| 02 | 2nob_B_DG3_DT4 | BBB | BB00 | 80 | 0.25 |
| 03 | 2nob_B_DT4_DA5 | BBw | BB11 | 73 | 0.49 |
| 04 | 2nob_B_DA5_DG6 | NAN | NANT | 0 | 0.79 |
| 05 | 2nob_B_DG6_DA7 | BBB | BB00 | 54 | 0.50 |
| 06 | 2nob_B_DA7_DC8 | NAN | NANT | 0 | 0.50 |
| 07 | 2nob_B_DC8_DC9 | NAN | NANT | 0 | 0.83 |
| 08 | 2nob_B_DC9_DT10 | BBB | BB00 | 40 | 0.45 |
| 09 | 2nob_B_DT10_DG11 | BB2 | BB07 | 73 | 0.15 |
| 10 | 2nob_B_DG11_DG12 | B12 | BB04 | 89 | 0.24 |
| 11 | 2nob_B_DG12_DA13 | BBw | BB02 | 16 | 0.42 |
| 12 | 2nob_B_DA13_DC14 | BBw | BB03 | 57 | 0.36 |
| 13 | 2nob_B_DC14_DG15 | NAN | NANT | 0 | 0.69 |
| 14 | 2nob_C_DC19_DG20 | B12 | BB04 | 54 | 0.44 |
| 15 | 2nob_C_DG20_DT21 | BBB | BB00 | 86 | 0.17 |
| 16 | 2nob_C_DT21_DC22 | BBw | BB02 | 80 | 0.26 |
| 17 | 2nob_C_DC22_DC23 | BBB | BB00 | 63 | 0.41 |
| 18 | 2nob_C_DC23_DA24 | B12 | BB04 | 81 | 0.25 |
| 19 | 2nob_C_DA24_8OG25 | NAN | NANT | 0 | 0.79 |
| 20 | 2nob_C_8OG25_DG26 | NAN | NANT | 0 | 0.99 |
| 21 | 2nob_C_DG26_DT27 | BBB | BB00 | 90 | 0.17 |
| 22 | 2nob_C_DT27_DC28 | BBB | BB00 | 95 | 0.12 |
| 23 | 2nob_C_DC28_DT29 | BBB | BB00 | 92 | 0.17 |
| 24 | 2nob_C_DT29_DA30 | BB2 | BB07 | 90 | 0.23 |
| 25 | 2nob_C_DA30_DC31 | BBB | BB00 | 84 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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