Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2nl8_W_DC10_DG11 | BBw | BB17 | 46 | 0.46 |
| 02 | 2nl8_W_DG11_DA12 | BB2 | BB07 | 77 | 0.24 |
| 03 | 2nl8_W_DA12_DG13 | BBB | BB00 | 81 | 0.21 |
| 04 | 2nl8_W_DG13_DG14 | B-A | BA13 | 22 | 0.25 |
| 05 | 2nl8_W_DG14_DC15 | AAA | AA03 | 72 | 0.23 |
| 06 | 2nl8_W_DC15_DC16 | AAA | AA00 | 32 | 0.36 |
| 07 | 2nl8_W_DC16_DA17 | A-B | AB01 | 56 | 0.18 |
| 08 | 2nl8_W_DA17_DT18 | BBB | BB00 | 85 | 0.18 |
| 09 | 2nl8_W_DT18_DC19 | BBB | BB00 | 76 | 0.34 |
| 10 | 2nl8_W_DC19_DA20 | BB2 | BB07 | 84 | 0.24 |
| 11 | 2nl8_W_DA20_DT21 | BBB | BB01 | 80 | 0.17 |
| 12 | 2nl8_W_DT21_DG22 | BBB | BB00 | 62 | 0.35 |
| 13 | 2nl8_W_DG22_DG23 | BB2 | BB07 | 68 | 0.29 |
| 14 | 2nl8_W_DG23_DC24 | BBB | BB01 | 57 | 0.23 |
| 15 | 2nl8_W_DC24_DC25 | A-B | AB03 | 70 | 0.27 |
| 16 | 2nl8_W_DC25_DT26 | BBB | BB01 | 20 | 0.32 |
| 17 | 2nl8_W_DT26_DC27 | A-B | AB03 | 76 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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