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Conformers: ABBIImiBZICOPNSYNN
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Solution structure of the Tetrahymena telomerase RNA stem IV terminal loop

Results of the assignment of 280 detected steps in 14 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012m21-m10_A_G1_G2AAAAA08270.35 AA08
0022m21-m11_A_G1_G2AAAAA00170.33 AA00
0032m21-m12_A_G1_G2AAAAA03300.27 AA03
0042m21-m13_A_G1_G2AAAAA0050.33 AA00
0052m21-m14_A_G1_G2AAAAA04210.48 AA04
0062m21-m1_A_G1_G2AAAAA00230.39 AA00
0072m21-m2_A_G1_G2AAAAA00140.35 AA00
0082m21-m3_A_G1_G2AAAAA00220.37 AA00
0092m21-m4_A_G1_G2AAAAA00120.37 AA00
0102m21-m5_A_G1_G2AAAAA00120.44 AA00
0112m21-m6_A_G1_G2AAAAA03320.29 AA03
0122m21-m7_A_G1_G2NANNANT00.49 AB04
0132m21-m8_A_G1_G2NANNANT00.51 AB04
0142m21-m9_A_G1_G2AAAAA08240.30 AA08
0152m21-m10_A_G2_C3AAAAA00220.26 AA00
0162m21-m11_A_G2_C3AAAAA08340.32 AA08
0172m21-m12_A_G2_C3AAAAA00500.33 AA00
0182m21-m13_A_G2_C3AAAAA00560.31 AA00
0192m21-m14_A_G2_C3AAAAA08290.32 AA08
0202m21-m1_A_G2_C3AAAAA00390.28 AA00
0212m21-m2_A_G2_C3AAAAA00320.27 AA00
0222m21-m3_A_G2_C3AAAAA08450.26 AA08
0232m21-m4_A_G2_C3AAAAA00270.28 AA00
0242m21-m5_A_G2_C3AAAAA08410.27 AA08
0252m21-m6_A_G2_C3AAAAA08460.26 AA08
0262m21-m7_A_G2_C3AAAAA08180.38 AA08
0272m21-m8_A_G2_C3AAAAA08330.32 AA08
0282m21-m9_A_G2_C3AAAAA08410.26 AA08
0292m21-m10_A_C3_G4AAAAA00630.22 AA00
0302m21-m11_A_C3_G4AAAAA0060.52 AA00
0312m21-m12_A_C3_G4AAAAA00110.49 AA00
0322m21-m13_A_C3_G4AAuAA12180.39 AA12
0332m21-m14_A_C3_G4AAAAA0080.49 AA00
0342m21-m1_A_C3_G4AAAAA0090.50 AA00
0352m21-m2_A_C3_G4AAAAA04250.56 AA04
0362m21-m3_A_C3_G4AAAAA0080.51 AA00
0372m21-m4_A_C3_G4AAAAA04230.54 AA04
0382m21-m5_A_C3_G4AAAAA0050.54 AA00
0392m21-m6_A_C3_G4AAAAA00120.49 AA00
0402m21-m7_A_C3_G4AAAAA00140.47 AA00
0412m21-m8_A_C3_G4AAAAA00190.39 AA00
0422m21-m9_A_C3_G4AAAAA0060.53 AA00
0432m21-m10_A_G4_A5AAAAA00140.43 AA00
0442m21-m11_A_G4_A5AAAAA00150.41 AA00
0452m21-m12_A_G4_A5AAAAA08160.40 AA08
0462m21-m13_A_G4_A5AAAAA00220.31 AA00
0472m21-m14_A_G4_A5AAAAA00140.43 AA00
0482m21-m1_A_G4_A5AAAAA00110.44 AA00
0492m21-m2_A_G4_A5AAAAA08230.27 AA08
0502m21-m3_A_G4_A5AAAAA00120.44 AA00
0512m21-m4_A_G4_A5AAAAA00180.38 AA00
0522m21-m5_A_G4_A5AAAAA00140.43 AA00
0532m21-m6_A_G4_A5AAAAA04410.42 AA04
0542m21-m7_A_G4_A5AAAAA08250.40 AA08
0552m21-m8_A_G4_A5AAAAA00170.33 AA00
0562m21-m9_A_G4_A5AAAAA08110.42 AA08
0572m21-m10_A_A5_U6AAAAA00180.31 AA00
0582m21-m11_A_A5_U6AAAAA00160.35 AA00
0592m21-m12_A_A5_U6AAAAA00150.38 AA00
0602m21-m13_A_A5_U6AAAAA08370.32 AA08
0612m21-m14_A_A5_U6AAAAA00150.40 AA00
0622m21-m1_A_A5_U6AAAAA08240.32 AA08
0632m21-m2_A_A5_U6AAAAA00160.35 AA00
0642m21-m3_A_A5_U6AAAAA00150.37 AA00
0652m21-m4_A_A5_U6AAAAA04630.27 AA04
0662m21-m5_A_A5_U6AAAAA00270.32 AA00
0672m21-m6_A_A5_U6AAAAA00160.32 AA00
0682m21-m7_A_A5_U6AAAAA04710.29 AA04
0692m21-m8_A_A5_U6AAAAA00170.39 AA00
0702m21-m9_A_A5_U6AAAAA00280.32 AA00
0712m21-m10_A_U6_A7AAAAA00230.27 AA00
0722m21-m11_A_U6_A7AAAAA04420.36 AA04
0732m21-m12_A_U6_A7AAAAA00280.28 AA00
0742m21-m13_A_U6_A7AAAAA00230.33 AA00
0752m21-m14_A_U6_A7AAAAA00110.44 AA00
0762m21-m1_A_U6_A7AAAAA00140.46 AA00
0772m21-m2_A_U6_A7AAAAA08190.45 AA08
0782m21-m3_A_U6_A7AAAAA00130.46 AA00
0792m21-m4_A_U6_A7AAAAA00110.35 AA00
0802m21-m5_A_U6_A7AAAAA0090.43 AA00
0812m21-m6_A_U6_A7AAAAA04650.32 AA04
0822m21-m7_A_U6_A7AAAAA04580.27 AA04
0832m21-m8_A_U6_A7AAAAA0090.42 AA00
0842m21-m9_A_U6_A7AAAAA00190.32 AA00
0852m21-m10_A_A7_C8AAAAA03250.30 AA03
0862m21-m11_A_A7_C8NANNANT00.41 AB03
0872m21-m12_A_A7_C8AAAAA03270.35 AA03
0882m21-m13_A_A7_C8AAwAA1090.50 AA10
0892m21-m14_A_A7_C8NANNANT00.48 AA04
0902m21-m1_A_A7_C8AAwAA06220.33 AA06
0912m21-m2_A_A7_C8NANNANT00.54 AA04
0922m21-m3_A_A7_C8NANNANT00.46 AA08
0932m21-m4_A_A7_C8AAAAA03150.40 AA03
0942m21-m5_A_A7_C8AAwAA06120.30 AA06
0952m21-m6_A_A7_C8AAAAA09250.31 AA09
0962m21-m7_A_A7_C8AAAAA03210.34 AA03
0972m21-m8_A_A7_C8AAwAA06110.38 AA06
0982m21-m9_A_A7_C8AAAAA09160.38 AA09
0992m21-m10_A_C8_A9NANNANT00.55 AA04
1002m21-m11_A_C8_A9NANNANT00.67 BA10
1012m21-m12_A_C8_A9NANNANT00.68 AA08
1022m21-m13_A_C8_A9NANNANT00.55 AA08
1032m21-m14_A_C8_A9AAAAA04200.57 AA04
1042m21-m1_A_C8_A9AAAAA04130.57 AA04
1052m21-m2_A_C8_A9NANNANT00.46 AA08
1062m21-m3_A_C8_A9NANNANT00.45 AA06
1072m21-m4_A_C8_A9NANNANT00.61 BA10
1082m21-m5_A_C8_A9NANNANT00.50 AA06
1092m21-m6_A_C8_A9AAwAA06160.38 AA06
1102m21-m7_A_C8_A9NANNANT00.66 AA08
1112m21-m8_A_C8_A9NANNANT00.47 AA08
1122m21-m9_A_C8_A9AAwAA06150.37 AA06
1132m21-m10_A_A9_C10NANNANT00.59 AA02
1142m21-m11_A_A9_C10NANNANT00.79 AA06
1152m21-m12_A_A9_C10NANNANT00.56 AA02
1162m21-m13_A_A9_C10NANNANT00.56 BB16
1172m21-m14_A_A9_C10NANNANT00.50 BB16
1182m21-m1_A_A9_C10NANNANT00.50 BB16
1192m21-m2_A_A9_C10NANNANT00.51 AB03
1202m21-m3_A_A9_C10NANNANT00.75 AA04
1212m21-m4_A_A9_C10NANNANT00.50 BB16
1222m21-m5_A_A9_C10NANNANT00.43 BB16
1232m21-m6_A_A9_C10NANNANT00.41 AA09
1242m21-m7_A_A9_C10NANNANT00.84 BA10
1252m21-m8_A_A9_C10NANNANT00.57 AA03
1262m21-m9_A_A9_C10NANNANT00.49 AA09
1272m21-m10_A_C10_U11NANNANT01.20 OP24
1282m21-m11_A_C10_U11NANNANT01.21 OP24
1292m21-m12_A_C10_U11NANNANT01.18 OP24
1302m21-m13_A_C10_U11NANNANT01.17 OP24
1312m21-m14_A_C10_U11NANNANT01.12 OP24
1322m21-m1_A_C10_U11NANNANT01.17 OP24
1332m21-m2_A_C10_U11NANNANT01.16 OP24
1342m21-m3_A_C10_U11NANNANT01.13 OP24
1352m21-m4_A_C10_U11NANNANT01.17 OP24
1362m21-m5_A_C10_U11NANNANT01.16 OP24
1372m21-m6_A_C10_U11NANNANT01.24 OP24
1382m21-m7_A_C10_U11NANNANT01.13 OP24
1392m21-m8_A_C10_U11NANNANT01.11 OP24
1402m21-m9_A_C10_U11NANNANT01.16 OP24
1412m21-m10_A_U11_A12NANNANT00.86 ZZ2S
1422m21-m11_A_U11_A12NANNANT00.86 ZZ2S
1432m21-m12_A_U11_A12NANNANT00.92 ZZ2S
1442m21-m13_A_U11_A12NANNANT00.87 ZZ2S
1452m21-m14_A_U11_A12NANNANT00.86 ZZ2S
1462m21-m1_A_U11_A12NANNANT00.87 ZZ2S
1472m21-m2_A_U11_A12NANNANT00.89 ZZ2S
1482m21-m3_A_U11_A12NANNANT00.95 ZZ2S
1492m21-m4_A_U11_A12NANNANT00.89 ZZ2S
1502m21-m5_A_U11_A12NANNANT00.93 ZZ2S
1512m21-m6_A_U11_A12NANNANT00.86 ZZ2S
1522m21-m7_A_U11_A12NANNANT00.91 ZZ2S
1532m21-m8_A_U11_A12NANNANT00.95 ZZ2S
1542m21-m9_A_U11_A12NANNANT00.89 ZZ2S
1552m21-m10_A_A12_U13NANNANT01.26 OPS1
1562m21-m11_A_A12_U13NANNANT00.74 IC03
1572m21-m12_A_A12_U13NANNANT01.10 OPS1
1582m21-m13_A_A12_U13NANNANT00.84 IC03
1592m21-m14_A_A12_U13NANNANT00.91 IC03
1602m21-m1_A_A12_U13NANNANT01.40 OP29
1612m21-m2_A_A12_U13NANNANT00.88 IC03
1622m21-m3_A_A12_U13NANNANT01.23 OPS1
1632m21-m4_A_A12_U13NANNANT00.78 IC03
1642m21-m5_A_A12_U13NANNANT01.30 OPS1
1652m21-m6_A_A12_U13NANNANT01.09 OPS1
1662m21-m7_A_A12_U13NANNANT01.25 OPS1
1672m21-m8_A_A12_U13NANNANT01.25 OP29
1682m21-m9_A_A12_U13NANNANT01.18 OPS1
1692m21-m10_A_U13_U14NANNANT00.58 OP01
1702m21-m11_A_U13_U14NANNANT01.03 OP19
1712m21-m12_A_U13_U14NANNANT00.98 OP19
1722m21-m13_A_U13_U14NANNANT01.00 OP19
1732m21-m14_A_U13_U14NANNANT00.91 OP27
1742m21-m1_A_U13_U14NANNANT01.00 OP27
1752m21-m2_A_U13_U14NANNANT00.94 OP27
1762m21-m3_A_U13_U14NANNANT00.90 OP19
1772m21-m4_A_U13_U14NANNANT01.04 OP19
1782m21-m5_A_U13_U14NANNANT00.98 OP19
1792m21-m6_A_U13_U14NANNANT01.10 OP27
1802m21-m7_A_U13_U14NANNANT01.55 OP16
1812m21-m8_A_U13_U14NANNANT00.67 OP01
1822m21-m9_A_U13_U14NANNANT01.54 OP16
1832m21-m10_A_U14_U15AAAAA08280.38 AA08
1842m21-m11_A_U14_U15AAAAA09440.32 AA09
1852m21-m12_A_U14_U15AAAAA08350.37 AA08
1862m21-m13_A_U14_U15AAAAA00460.22 AA00
1872m21-m14_A_U14_U15AAAAA00450.29 AA00
1882m21-m1_A_U14_U15AAAAA03370.29 AA03
1892m21-m2_A_U14_U15AAAAA00400.29 AA00
1902m21-m3_A_U14_U15AAAAA00400.31 AA00
1912m21-m4_A_U14_U15AAAAA08310.38 AA08
1922m21-m5_A_U14_U15AAAAA00530.20 AA00
1932m21-m6_A_U14_U15AAAAA08220.41 AA08
1942m21-m7_A_U14_U15AAAAA09410.33 AA09
1952m21-m8_A_U14_U15AAAAA00220.30 AA00
1962m21-m9_A_U14_U15AAAAA09400.33 AA09
1972m21-m10_A_U15_A16AAAAA00500.24 AA00
1982m21-m11_A_U15_A16AAAAA00460.36 AA00
1992m21-m12_A_U15_A16AAAAA00570.26 AA00
2002m21-m13_A_U15_A16AAAAA04790.27 AA04
2012m21-m14_A_U15_A16AAAAA00550.37 AA00
2022m21-m1_A_U15_A16AAAAA00190.35 AA00
2032m21-m2_A_U15_A16AAAAA00540.25 AA00
2042m21-m3_A_U15_A16AAAAA00590.36 AA00
2052m21-m4_A_U15_A16AAAAA00610.34 AA00
2062m21-m5_A_U15_A16AAAAA04720.30 AA04
2072m21-m6_A_U15_A16AAAAA04700.23 AA04
2082m21-m7_A_U15_A16AAAAA04690.25 AA04
2092m21-m8_A_U15_A16AAAAA00530.38 AA00
2102m21-m9_A_U15_A16AAAAA04710.30 AA04
2112m21-m10_A_A16_U17AAAAA04650.34 AA04
2122m21-m11_A_A16_U17AAAAA08570.28 AA08
2132m21-m12_A_A16_U17AAAAA00310.30 AA00
2142m21-m13_A_A16_U17AAAAA08510.31 AA08
2152m21-m14_A_A16_U17AAAAA00350.32 AA00
2162m21-m1_A_A16_U17AAAAA00470.27 AA00
2172m21-m2_A_A16_U17AAAAA00410.32 AA00
2182m21-m3_A_A16_U17AAAAA08560.28 AA08
2192m21-m4_A_A16_U17AAAAA00450.29 AA00
2202m21-m5_A_A16_U17AAAAA08330.31 AA08
2212m21-m6_A_A16_U17AAAAA00300.32 AA00
2222m21-m7_A_A16_U17AAAAA03680.25 AA03
2232m21-m8_A_A16_U17AAAAA08420.31 AA08
2242m21-m9_A_A16_U17AAAAA00560.32 AA00
2252m21-m10_A_U17_C18AAAAA08700.19 AA08
2262m21-m11_A_U17_C18AAAAA08500.20 AA08
2272m21-m12_A_U17_C18AAAAA08490.24 AA08
2282m21-m13_A_U17_C18AAAAA00630.34 AA00
2292m21-m14_A_U17_C18AAAAA00430.35 AA00
2302m21-m1_A_U17_C18AAAAA00450.31 AA00
2312m21-m2_A_U17_C18AAAAA08550.23 AA08
2322m21-m3_A_U17_C18AAAAA08680.20 AA08
2332m21-m4_A_U17_C18AAAAA00190.37 AA00
2342m21-m5_A_U17_C18AAAAA08410.28 AA08
2352m21-m6_A_U17_C18AAAAA00550.33 AA00
2362m21-m7_A_U17_C18AAAAA00320.31 AA00
2372m21-m8_A_U17_C18AAAAA08520.25 AA08
2382m21-m9_A_U17_C18AAAAA08630.22 AA08
2392m21-m10_A_C18_G19AAAAA00380.27 AA00
2402m21-m11_A_C18_G19AAAAA00390.32 AA00
2412m21-m12_A_C18_G19AAAAA08400.27 AA08
2422m21-m13_A_C18_G19AAAAA08530.24 AA08
2432m21-m14_A_C18_G19AAAAA08560.23 AA08
2442m21-m1_A_C18_G19AAAAA00330.28 AA00
2452m21-m2_A_C18_G19AAAAA08400.27 AA08
2462m21-m3_A_C18_G19AAAAA08490.25 AA08
2472m21-m4_A_C18_G19AAAAA00380.26 AA00
2482m21-m5_A_C18_G19AAAAA00340.31 AA00
2492m21-m6_A_C18_G19AAAAA08340.24 AA08
2502m21-m7_A_C18_G19AAAAA00560.27 AA00
2512m21-m8_A_C18_G19AAAAA00680.25 AA00
2522m21-m9_A_C18_G19AAAAA00310.35 AA00
2532m21-m10_A_G19_C20AAAAA00540.27 AA00
2542m21-m11_A_G19_C20AAAAA00160.30 AA00
2552m21-m12_A_G19_C20AAAAA03550.28 AA03
2562m21-m13_A_G19_C20AAAAA00640.27 AA00
2572m21-m14_A_G19_C20AAAAA03530.28 AA03
2582m21-m1_A_G19_C20AAAAA00440.29 AA00
2592m21-m2_A_G19_C20AAAAA00410.30 AA00
2602m21-m3_A_G19_C20AAAAA00300.35 AA00
2612m21-m4_A_G19_C20AAAAA00370.30 AA00
2622m21-m5_A_G19_C20AAAAA00550.29 AA00
2632m21-m6_A_G19_C20AAAAA00500.27 AA00
2642m21-m7_A_G19_C20AAAAA00370.30 AA00
2652m21-m8_A_G19_C20AAAAA00410.31 AA00
2662m21-m9_A_G19_C20AAAAA03500.27 AA03
2672m21-m10_A_C20_C21AAAAA00140.32 AA00
2682m21-m11_A_C20_C21AAAAA0070.39 AA00
2692m21-m12_A_C20_C21AAAAA00110.40 AA00
2702m21-m13_A_C20_C21AAAAA00110.38 AA00
2712m21-m14_A_C20_C21AAAAA00130.39 AA00
2722m21-m1_A_C20_C21AAAAA0080.41 AA00
2732m21-m2_A_C20_C21AAAAA00120.40 AA00
2742m21-m3_A_C20_C21AAAAA0090.39 AA00
2752m21-m4_A_C20_C21AAAAA00140.32 AA00
2762m21-m5_A_C20_C21AAAAA0090.41 AA00
2772m21-m6_A_C20_C21AAAAA0080.41 AA00
2782m21-m7_A_C20_C21AAAAA00110.44 AA00
2792m21-m8_A_C20_C21AAAAA00140.38 AA00
2802m21-m9_A_C20_C21AAAAA00110.40 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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