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Conformers: ABBIImiBZICOPNSYNN
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ID3 stem

Results of the assignment of 120 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012m1o-m10_A_G1_G2AAAAA00920.22 AA00
0022m1o-m1_A_G1_G2AAAAA00880.24 AA00
0032m1o-m2_A_G1_G2AAAAA00940.20 AA00
0042m1o-m3_A_G1_G2AAAAA00920.22 AA00
0052m1o-m4_A_G1_G2AAAAA00910.23 AA00
0062m1o-m5_A_G1_G2AAAAA00920.22 AA00
0072m1o-m6_A_G1_G2AAAAA00880.24 AA00
0082m1o-m7_A_G1_G2AAAAA00910.21 AA00
0092m1o-m8_A_G1_G2AAAAA00940.22 AA00
0102m1o-m9_A_G1_G2AAAAA00930.21 AA00
0112m1o-m10_A_G2_G3AAAAA00950.23 AA00
0122m1o-m1_A_G2_G3AAAAA00950.23 AA00
0132m1o-m2_A_G2_G3AAAAA00960.22 AA00
0142m1o-m3_A_G2_G3AAAAA00960.23 AA00
0152m1o-m4_A_G2_G3AAAAA00960.23 AA00
0162m1o-m5_A_G2_G3AAAAA00960.23 AA00
0172m1o-m6_A_G2_G3AAAAA00950.23 AA00
0182m1o-m7_A_G2_G3AAAAA00960.22 AA00
0192m1o-m8_A_G2_G3AAAAA00960.23 AA00
0202m1o-m9_A_G2_G3AAAAA00950.22 AA00
0212m1o-m10_A_G3_U4AAAAA00900.28 AA00
0222m1o-m1_A_G3_U4AAAAA00900.28 AA00
0232m1o-m2_A_G3_U4AAAAA00920.27 AA00
0242m1o-m3_A_G3_U4AAAAA00900.28 AA00
0252m1o-m4_A_G3_U4AAAAA00900.28 AA00
0262m1o-m5_A_G3_U4AAAAA00920.27 AA00
0272m1o-m6_A_G3_U4AAAAA00920.27 AA00
0282m1o-m7_A_G3_U4AAAAA00900.26 AA00
0292m1o-m8_A_G3_U4AAAAA00920.27 AA00
0302m1o-m9_A_G3_U4AAAAA00910.28 AA00
0312m1o-m10_A_U4_G5AAAAA00970.25 AA00
0322m1o-m1_A_U4_G5AAAAA00970.26 AA00
0332m1o-m2_A_U4_G5AAAAA00950.28 AA00
0342m1o-m3_A_U4_G5AAAAA00960.25 AA00
0352m1o-m4_A_U4_G5AAAAA00970.26 AA00
0362m1o-m5_A_U4_G5AAAAA00970.25 AA00
0372m1o-m6_A_U4_G5AAAAA00950.27 AA00
0382m1o-m7_A_U4_G5AAAAA00960.25 AA00
0392m1o-m8_A_U4_G5AAAAA00960.26 AA00
0402m1o-m9_A_U4_G5AAAAA00950.26 AA00
0412m1o-m10_A_G5_U6A-BAB05680.18 AB05
0422m1o-m1_A_G5_U6A-BAB05710.19 AB05
0432m1o-m2_A_G5_U6AAAAA09410.37 AA09
0442m1o-m3_A_G5_U6A-BAB05670.18 AB05
0452m1o-m4_A_G5_U6A-BAB05760.18 AB05
0462m1o-m5_A_G5_U6A-BAB05770.19 AB05
0472m1o-m6_A_G5_U6AAAAA09390.38 AA09
0482m1o-m7_A_G5_U6A-BAB05760.18 AB05
0492m1o-m8_A_G5_U6A-BAB05720.18 AB05
0502m1o-m9_A_G5_U6NANNANT00.42 AB04
0512m1o-m10_A_U6_A7BBBBB01870.17 BB01
0522m1o-m1_A_U6_A7BBwBB03620.27 BB03
0532m1o-m2_A_U6_A7NANNANT00.34 AA02
0542m1o-m3_A_U6_A7BBBBB00820.16 BB00
0552m1o-m4_A_U6_A7BBBBB01870.15 BB01
0562m1o-m5_A_U6_A7BBBBB01880.15 BB01
0572m1o-m6_A_U6_A7NANNANT00.33 AA02
0582m1o-m7_A_U6_A7BBBBB01870.14 BB01
0592m1o-m8_A_U6_A7BBBBB01880.14 BB01
0602m1o-m9_A_U6_A7NANNANT00.37 AA02
0612m1o-m10_B_A17_G18AAAAA00620.36 AA00
0622m1o-m1_B_A17_G18AAAAA00600.38 AA00
0632m1o-m2_B_A17_G18AAAAA00710.33 AA00
0642m1o-m3_B_A17_G18NANNANT00.55 BB03
0652m1o-m4_B_A17_G18AAAAA00630.36 AA00
0662m1o-m5_B_A17_G18AAAAA08100.38 AA08
0672m1o-m6_B_A17_G18AAAAA00780.33 AA00
0682m1o-m7_B_A17_G18AAAAA00610.37 AA00
0692m1o-m8_B_A17_G18AAAAA00620.36 AA00
0702m1o-m9_B_A17_G18AAAAA00740.32 AA00
0712m1o-m10_B_G18_C19AAAAA00920.23 AA00
0722m1o-m1_B_G18_C19AAAAA00900.25 AA00
0732m1o-m2_B_G18_C19AAAAA00930.24 AA00
0742m1o-m3_B_G18_C19AAAAA00900.24 AA00
0752m1o-m4_B_G18_C19AAAAA00930.24 AA00
0762m1o-m5_B_G18_C19AAAAA00880.26 AA00
0772m1o-m6_B_G18_C19AAAAA00910.26 AA00
0782m1o-m7_B_G18_C19AAAAA00920.24 AA00
0792m1o-m8_B_G18_C19AAAAA00920.24 AA00
0802m1o-m9_B_G18_C19AAAAA00930.24 AA00
0812m1o-m10_B_C19_A20AAAAA00950.21 AA00
0822m1o-m1_B_C19_A20AAAAA00960.21 AA00
0832m1o-m2_B_C19_A20AAAAA00930.22 AA00
0842m1o-m3_B_C19_A20AAAAA00950.22 AA00
0852m1o-m4_B_C19_A20AAAAA00950.21 AA00
0862m1o-m5_B_C19_A20AAAAA00950.21 AA00
0872m1o-m6_B_C19_A20AAAAA00940.23 AA00
0882m1o-m7_B_C19_A20AAAAA00950.21 AA00
0892m1o-m8_B_C19_A20AAAAA00950.21 AA00
0902m1o-m9_B_C19_A20AAAAA00950.22 AA00
0912m1o-m10_B_A20_C21AAAAA00930.28 AA00
0922m1o-m1_B_A20_C21AAAAA00920.28 AA00
0932m1o-m2_B_A20_C21AAAAA00920.28 AA00
0942m1o-m3_B_A20_C21AAAAA00920.28 AA00
0952m1o-m4_B_A20_C21AAAAA00920.28 AA00
0962m1o-m5_B_A20_C21AAAAA00920.26 AA00
0972m1o-m6_B_A20_C21AAAAA00920.27 AA00
0982m1o-m7_B_A20_C21AAAAA00940.27 AA00
0992m1o-m8_B_A20_C21AAAAA00920.27 AA00
1002m1o-m9_B_A20_C21AAAAA00920.29 AA00
1012m1o-m10_B_C21_C22AAAAA00940.29 AA00
1022m1o-m1_B_C21_C22AAAAA00940.29 AA00
1032m1o-m2_B_C21_C22AAAAA00940.29 AA00
1042m1o-m3_B_C21_C22AAAAA00940.29 AA00
1052m1o-m4_B_C21_C22AAAAA00940.29 AA00
1062m1o-m5_B_C21_C22AAAAA00940.28 AA00
1072m1o-m6_B_C21_C22AAAAA00940.28 AA00
1082m1o-m7_B_C21_C22AAAAA00940.28 AA00
1092m1o-m8_B_C21_C22AAAAA00940.28 AA00
1102m1o-m9_B_C21_C22AAAAA00940.29 AA00
1112m1o-m10_B_C22_C23A-BAB01270.36 AB01
1122m1o-m1_B_C22_C23A-BAB01270.36 AB01
1132m1o-m2_B_C22_C23A-BAB01310.36 AB01
1142m1o-m3_B_C22_C23A-BAB01270.36 AB01
1152m1o-m4_B_C22_C23A-BAB01290.36 AB01
1162m1o-m5_B_C22_C23A-BAB01300.36 AB01
1172m1o-m6_B_C22_C23A-BAB01260.36 AB01
1182m1o-m7_B_C22_C23A-BAB01280.36 AB01
1192m1o-m8_B_C22_C23A-BAB01280.36 AB01
1202m1o-m9_B_C22_C23A-BAB01280.36 AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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