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Conformers: ABBIImiBZICOPNSYNN
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U2/U6 Helix I

Results of the assignment of 230 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012lk3-m10_A_G1_G2AAAAA00670.32 AA00
0022lk3-m1_A_G1_G2AAAAA00660.32 AA00
0032lk3-m2_A_G1_G2AAAAA00680.32 AA00
0042lk3-m3_A_G1_G2AAAAA00690.32 AA00
0052lk3-m4_A_G1_G2AAAAA00680.32 AA00
0062lk3-m5_A_G1_G2AAAAA00620.31 AA00
0072lk3-m6_A_G1_G2AAAAA00670.31 AA00
0082lk3-m7_A_G1_G2AAAAA00610.31 AA00
0092lk3-m8_A_G1_G2AAAAA00700.30 AA00
0102lk3-m9_A_G1_G2AAAAA00680.32 AA00
0112lk3-m10_A_G2_C3AAAAA00890.29 AA00
0122lk3-m1_A_G2_C3AAAAA00890.28 AA00
0132lk3-m2_A_G2_C3AAAAA00880.28 AA00
0142lk3-m3_A_G2_C3AAAAA00890.29 AA00
0152lk3-m4_A_G2_C3AAAAA00870.29 AA00
0162lk3-m5_A_G2_C3AAAAA00800.27 AA00
0172lk3-m6_A_G2_C3AAAAA00870.28 AA00
0182lk3-m7_A_G2_C3AAAAA00800.28 AA00
0192lk3-m8_A_G2_C3AAAAA00850.28 AA00
0202lk3-m9_A_G2_C3AAAAA00890.29 AA00
0212lk3-m10_A_C3_U4A-BAB01180.37 AB01
0222lk3-m1_A_C3_U4A-BAB01180.37 AB01
0232lk3-m2_A_C3_U4A-BAB01190.37 AB01
0242lk3-m3_A_C3_U4A-BAB01170.37 AB01
0252lk3-m4_A_C3_U4A-BAB05390.31 AB05
0262lk3-m5_A_C3_U4AAAAA00130.45 AA00
0272lk3-m6_A_C3_U4A-BAB01290.35 AB01
0282lk3-m7_A_C3_U4AAuAA12380.48 AA12
0292lk3-m8_A_C3_U4AAAAA00140.45 AA00
0302lk3-m9_A_C3_U4A-BAB01200.36 AB01
0312lk3-m10_A_U4_U5NANNANT00.77 OP22
0322lk3-m1_A_U4_U5NANNANT00.76 OP22
0332lk3-m2_A_U4_U5NANNANT00.77 OP22
0342lk3-m3_A_U4_U5NANNANT00.71 OP22
0352lk3-m4_A_U4_U5OPNOP10370.41 OP10
0362lk3-m5_A_U4_U5NANNANT01.10 AB01
0372lk3-m6_A_U4_U5OPNOP10260.38 OP10
0382lk3-m7_A_U4_U5NANNANT01.16 AB01
0392lk3-m8_A_U4_U5NANNANT01.12 AB01
0402lk3-m9_A_U4_U5NANNANT00.78 OP22
0412lk3-m10_A_U5_A6NANNANT00.79 BA01
0422lk3-m1_A_U5_A6NANNANT00.79 BA01
0432lk3-m2_A_U5_A6NANNANT00.79 BA01
0442lk3-m3_A_U5_A6NANNANT00.81 BA01
0452lk3-m4_A_U5_A6AAAAA08510.45 AA08
0462lk3-m5_A_U5_A6B-ABA01160.35 BA01
0472lk3-m6_A_U5_A6AAAAA00310.46 AA00
0482lk3-m7_A_U5_A6B-ABA01180.32 BA01
0492lk3-m8_A_U5_A6B-ABA01140.31 BA01
0502lk3-m9_A_U5_A6NANNANT00.78 BA01
0512lk3-m10_A_A6_G7AAAAA00830.29 AA00
0522lk3-m1_A_A6_G7AAAAA00860.27 AA00
0532lk3-m2_A_A6_G7AAAAA00830.28 AA00
0542lk3-m3_A_A6_G7AAAAA00880.27 AA00
0552lk3-m4_A_A6_G7AAAAA00880.25 AA00
0562lk3-m5_A_A6_G7AAAAA00790.35 AA00
0572lk3-m6_A_A6_G7AAAAA00920.24 AA00
0582lk3-m7_A_A6_G7AAAAA00630.41 AA00
0592lk3-m8_A_A6_G7AAAAA00640.40 AA00
0602lk3-m9_A_A6_G7AAAAA00860.27 AA00
0612lk3-m10_A_G7_A8AAAAA00950.17 AA00
0622lk3-m1_A_G7_A8AAAAA00950.17 AA00
0632lk3-m2_A_G7_A8AAAAA00950.16 AA00
0642lk3-m3_A_G7_A8AAAAA00940.17 AA00
0652lk3-m4_A_G7_A8AAAAA00950.15 AA00
0662lk3-m5_A_G7_A8AAAAA00920.16 AA00
0672lk3-m6_A_G7_A8AAAAA00950.16 AA00
0682lk3-m7_A_G7_A8AAAAA00930.18 AA00
0692lk3-m8_A_G7_A8AAAAA00930.17 AA00
0702lk3-m9_A_G7_A8AAAAA00950.17 AA00
0712lk3-m10_A_A8_U9AAAAA00960.14 AA00
0722lk3-m1_A_A8_U9AAAAA00960.14 AA00
0732lk3-m2_A_A8_U9AAAAA00960.14 AA00
0742lk3-m3_A_A8_U9AAAAA00960.14 AA00
0752lk3-m4_A_A8_U9AAAAA00960.13 AA00
0762lk3-m5_A_A8_U9AAAAA00960.13 AA00
0772lk3-m6_A_A8_U9AAAAA00950.14 AA00
0782lk3-m7_A_A8_U9AAAAA00950.14 AA00
0792lk3-m8_A_A8_U9AAAAA00950.14 AA00
0802lk3-m9_A_A8_U9AAAAA00960.14 AA00
0812lk3-m10_A_U9_C10AAAAA00950.21 AA00
0822lk3-m1_A_U9_C10AAAAA00950.20 AA00
0832lk3-m2_A_U9_C10AAAAA00960.21 AA00
0842lk3-m3_A_U9_C10AAAAA00950.21 AA00
0852lk3-m4_A_U9_C10AAAAA00950.21 AA00
0862lk3-m5_A_U9_C10AAAAA00940.21 AA00
0872lk3-m6_A_U9_C10AAAAA00950.21 AA00
0882lk3-m7_A_U9_C10AAAAA00940.21 AA00
0892lk3-m8_A_U9_C10AAAAA00940.21 AA00
0902lk3-m9_A_U9_C10AAAAA00960.21 AA00
0912lk3-m10_A_C10_A11AAAAA00910.28 AA00
0922lk3-m1_A_C10_A11AAAAA00890.26 AA00
0932lk3-m2_A_C10_A11AAAAA00910.28 AA00
0942lk3-m3_A_C10_A11AAAAA00890.27 AA00
0952lk3-m4_A_C10_A11AAAAA00920.28 AA00
0962lk3-m5_A_C10_A11AAAAA00900.25 AA00
0972lk3-m6_A_C10_A11AAAAA00920.27 AA00
0982lk3-m7_A_C10_A11AAAAA00900.26 AA00
0992lk3-m8_A_C10_A11AAAAA00900.25 AA00
1002lk3-m9_A_C10_A11AAAAA00910.27 AA00
1012lk3-m10_A_A11_G12AAwAA01680.44 AA01
1022lk3-m1_A_A11_G12AAAAA00860.24 AA00
1032lk3-m2_A_A11_G12AAwAA01690.44 AA01
1042lk3-m3_A_A11_G12AAAAA00850.24 AA00
1052lk3-m4_A_A11_G12AAwAA01690.44 AA01
1062lk3-m5_A_A11_G12AAAAA00860.23 AA00
1072lk3-m6_A_A11_G12AAwAA01680.44 AA01
1082lk3-m7_A_A11_G12AAAAA00860.24 AA00
1092lk3-m8_A_A11_G12AAAAA00860.23 AA00
1102lk3-m9_A_A11_G12AAwAA01690.44 AA01
1112lk3-m10_A_G12_A13OPNOP04650.20 OP04
1122lk3-m1_A_G12_A13OPNOP04870.19 OP04
1132lk3-m2_A_G12_A13OPNOP04640.21 OP04
1142lk3-m3_A_G12_A13OPNOP04880.19 OP04
1152lk3-m4_A_G12_A13OPNOP04660.20 OP04
1162lk3-m5_A_G12_A13OPNOP04870.18 OP04
1172lk3-m6_A_G12_A13OPNOP04600.22 OP04
1182lk3-m7_A_G12_A13OPNOP04870.18 OP04
1192lk3-m8_A_G12_A13OPNOP04870.19 OP04
1202lk3-m9_A_G12_A13OPNOP04670.20 OP04
1212lk3-m10_A_A13_A14AAAAA00790.21 AA00
1222lk3-m1_A_A13_A14AAAAA00750.22 AA00
1232lk3-m2_A_A13_A14AAAAA00850.19 AA00
1242lk3-m3_A_A13_A14AAAAA00640.24 AA00
1252lk3-m4_A_A13_A14AAAAA00820.20 AA00
1262lk3-m5_A_A13_A14AAAAA00770.21 AA00
1272lk3-m6_A_A13_A14AAAAA00830.20 AA00
1282lk3-m7_A_A13_A14AAAAA00700.23 AA00
1292lk3-m8_A_A13_A14AAAAA00710.23 AA00
1302lk3-m9_A_A13_A14AAAAA00820.20 AA00
1312lk3-m10_A_A14_A15AAAAA00440.35 AA00
1322lk3-m1_A_A14_A15AAAAA00230.43 AA00
1332lk3-m2_A_A14_A15AAAAA00390.36 AA00
1342lk3-m3_A_A14_A15AAAAA00220.44 AA00
1352lk3-m4_A_A14_A15AAAAA00390.37 AA00
1362lk3-m5_A_A14_A15AAAAA00250.42 AA00
1372lk3-m6_A_A14_A15AAAAA00450.34 AA00
1382lk3-m7_A_A14_A15AAAAA00230.43 AA00
1392lk3-m8_A_A14_A15AAAAA00240.42 AA00
1402lk3-m9_A_A14_A15AAAAA00360.38 AA00
1412lk3-m10_A_A15_U16AAAAA00110.53 AA00
1422lk3-m1_A_A15_U16NANNANT00.56 AA08
1432lk3-m2_A_A15_U16AAAAA00120.51 AA00
1442lk3-m3_A_A15_U16NANNANT00.55 AA08
1452lk3-m4_A_A15_U16AAAAA00150.51 AA00
1462lk3-m5_A_A15_U16AAAAA08210.54 AA08
1472lk3-m6_A_A15_U16AAAAA00110.54 AA00
1482lk3-m7_A_A15_U16AAAAA08200.54 AA08
1492lk3-m8_A_A15_U16AAAAA08210.54 AA08
1502lk3-m9_A_A15_U16AAAAA00140.52 AA00
1512lk3-m10_A_U16_G17AAAAA00950.20 AA00
1522lk3-m1_A_U16_G17AAAAA00910.24 AA00
1532lk3-m2_A_U16_G17AAAAA00960.19 AA00
1542lk3-m3_A_U16_G17AAAAA00880.26 AA00
1552lk3-m4_A_U16_G17AAAAA00960.20 AA00
1562lk3-m5_A_U16_G17AAAAA00850.28 AA00
1572lk3-m6_A_U16_G17AAAAA00960.20 AA00
1582lk3-m7_A_U16_G17AAAAA00860.28 AA00
1592lk3-m8_A_U16_G17AAAAA00840.29 AA00
1602lk3-m9_A_U16_G17AAAAA00960.19 AA00
1612lk3-m10_A_G17_A18AAAAA00960.15 AA00
1622lk3-m1_A_G17_A18AAAAA00960.14 AA00
1632lk3-m2_A_G17_A18AAAAA00960.15 AA00
1642lk3-m3_A_G17_A18AAAAA00950.15 AA00
1652lk3-m4_A_G17_A18AAAAA00960.15 AA00
1662lk3-m5_A_G17_A18AAAAA00960.15 AA00
1672lk3-m6_A_G17_A18AAAAA00960.15 AA00
1682lk3-m7_A_G17_A18AAAAA00950.16 AA00
1692lk3-m8_A_G17_A18AAAAA00960.16 AA00
1702lk3-m9_A_G17_A18AAAAA00950.15 AA00
1712lk3-m10_A_A18_U19AAAAA00960.19 AA00
1722lk3-m1_A_A18_U19AAAAA00960.18 AA00
1732lk3-m2_A_A18_U19AAAAA00960.18 AA00
1742lk3-m3_A_A18_U19AAAAA00960.19 AA00
1752lk3-m4_A_A18_U19AAAAA00960.18 AA00
1762lk3-m5_A_A18_U19AAAAA00950.20 AA00
1772lk3-m6_A_A18_U19AAAAA00960.20 AA00
1782lk3-m7_A_A18_U19AAAAA00950.20 AA00
1792lk3-m8_A_A18_U19AAAAA00950.20 AA00
1802lk3-m9_A_A18_U19AAAAA00960.18 AA00
1812lk3-m10_A_U19_C20AAAAA00930.24 AA00
1822lk3-m1_A_U19_C20AAAAA00930.23 AA00
1832lk3-m2_A_U19_C20AAAAA00920.23 AA00
1842lk3-m3_A_U19_C20AAAAA00930.24 AA00
1852lk3-m4_A_U19_C20AAAAA00920.24 AA00
1862lk3-m5_A_U19_C20AAAAA00920.27 AA00
1872lk3-m6_A_U19_C20AAAAA00920.26 AA00
1882lk3-m7_A_U19_C20AAAAA00920.27 AA00
1892lk3-m8_A_U19_C20AAAAA00920.27 AA00
1902lk3-m9_A_U19_C20AAAAA00920.24 AA00
1912lk3-m10_A_C20_A21AAAAA08250.50 AA08
1922lk3-m1_A_C20_A21AAAAA08250.50 AA08
1932lk3-m2_A_C20_A21AAAAA08260.49 AA08
1942lk3-m3_A_C20_A21AAAAA08250.50 AA08
1952lk3-m4_A_C20_A21AAAAA08280.48 AA08
1962lk3-m5_A_C20_A21AAAAA08290.49 AA08
1972lk3-m6_A_C20_A21AAAAA08250.49 AA08
1982lk3-m7_A_C20_A21AAAAA08220.53 AA08
1992lk3-m8_A_C20_A21AAAAA08260.51 AA08
2002lk3-m9_A_C20_A21AAAAA08250.50 AA08
2012lk3-m10_A_A21_G22AAAAA00920.22 AA00
2022lk3-m1_A_A21_G22AAAAA00930.21 AA00
2032lk3-m2_A_A21_G22AAAAA00920.21 AA00
2042lk3-m3_A_A21_G22AAAAA00930.21 AA00
2052lk3-m4_A_A21_G22AAAAA00910.22 AA00
2062lk3-m5_A_A21_G22AAAAA00870.23 AA00
2072lk3-m6_A_A21_G22AAAAA00900.22 AA00
2082lk3-m7_A_A21_G22AAAAA00870.23 AA00
2092lk3-m8_A_A21_G22AAAAA00880.23 AA00
2102lk3-m9_A_A21_G22AAAAA00930.21 AA00
2112lk3-m10_A_G22_C23AAAAA00890.24 AA00
2122lk3-m1_A_G22_C23AAAAA00880.24 AA00
2132lk3-m2_A_G22_C23AAAAA00870.23 AA00
2142lk3-m3_A_G22_C23AAAAA00880.24 AA00
2152lk3-m4_A_G22_C23AAAAA00880.23 AA00
2162lk3-m5_A_G22_C23AAAAA00840.26 AA00
2172lk3-m6_A_G22_C23AAAAA00880.23 AA00
2182lk3-m7_A_G22_C23AAAAA00850.26 AA00
2192lk3-m8_A_G22_C23AAAAA00850.26 AA00
2202lk3-m9_A_G22_C23AAAAA00890.24 AA00
2212lk3-m10_A_C23_C24AAAAA00700.31 AA00
2222lk3-m1_A_C23_C24AAAAA00710.31 AA00
2232lk3-m2_A_C23_C24AAAAA00710.30 AA00
2242lk3-m3_A_C23_C24AAAAA00700.31 AA00
2252lk3-m4_A_C23_C24AAAAA00710.30 AA00
2262lk3-m5_A_C23_C24AAAAA00630.27 AA00
2272lk3-m6_A_C23_C24AAAAA00700.30 AA00
2282lk3-m7_A_C23_C24AAAAA00640.28 AA00
2292lk3-m8_A_C23_C24AAAAA00650.28 AA00
2302lk3-m9_A_C23_C24AAAAA00700.32 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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