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Conformers: ABBIImiBZICOPNSYNN
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Solution NMR Structure of the HIV-1 Exon Splicing Silencer 3

Results of the assignment of 312 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012ldl-m10_A_G1_G2AAAAA00270.42 AA00
0022ldl-m11_A_G1_G2AAAAA00380.37 AA00
0032ldl-m12_A_G1_G2AAAAA00420.33 AA00
0042ldl-m1_A_G1_G2AAAAA00250.44 AA00
0052ldl-m2_A_G1_G2AAAAA00240.43 AA00
0062ldl-m3_A_G1_G2AAAAA00250.42 AA00
0072ldl-m4_A_G1_G2AAAAA00430.35 AA00
0082ldl-m5_A_G1_G2AAAAA00450.35 AA00
0092ldl-m6_A_G1_G2AAAAA00250.42 AA00
0102ldl-m7_A_G1_G2AAAAA00260.42 AA00
0112ldl-m8_A_G1_G2AAAAA00250.43 AA00
0122ldl-m9_A_G1_G2AAAAA00250.43 AA00
0132ldl-m10_A_G2_A3AAAAA00700.32 AA00
0142ldl-m11_A_G2_A3AAAAA00580.28 AA00
0152ldl-m12_A_G2_A3AAAAA00340.32 AA00
0162ldl-m1_A_G2_A3AAAAA00620.36 AA00
0172ldl-m2_A_G2_A3AAAAA00730.28 AA00
0182ldl-m3_A_G2_A3AAAAA00710.31 AA00
0192ldl-m4_A_G2_A3AAAAA00520.30 AA00
0202ldl-m5_A_G2_A3AAAAA00710.27 AA00
0212ldl-m6_A_G2_A3AAAAA00720.29 AA00
0222ldl-m7_A_G2_A3AAAAA00710.31 AA00
0232ldl-m8_A_G2_A3AAAAA00670.34 AA00
0242ldl-m9_A_G2_A3AAAAA00660.36 AA00
0252ldl-m10_A_A3_U4AAAAA00590.33 AA00
0262ldl-m11_A_A3_U4AAAAA00650.33 AA00
0272ldl-m12_A_A3_U4AAAAA00640.36 AA00
0282ldl-m1_A_A3_U4AAAAA00480.37 AA00
0292ldl-m2_A_A3_U4AAAAA00580.33 AA00
0302ldl-m3_A_A3_U4AAAAA00560.34 AA00
0312ldl-m4_A_A3_U4AAAAA00640.34 AA00
0322ldl-m5_A_A3_U4AAAAA00600.34 AA00
0332ldl-m6_A_A3_U4AAAAA00580.34 AA00
0342ldl-m7_A_A3_U4AAAAA00600.34 AA00
0352ldl-m8_A_A3_U4AAAAA00550.35 AA00
0362ldl-m9_A_A3_U4AAAAA00540.33 AA00
0372ldl-m10_A_U4_C5AAAAA00390.43 AA00
0382ldl-m11_A_U4_C5AAAAA00290.44 AA00
0392ldl-m12_A_U4_C5AAAAA00330.43 AA00
0402ldl-m1_A_U4_C5AAAAA00390.43 AA00
0412ldl-m2_A_U4_C5AAAAA00380.43 AA00
0422ldl-m3_A_U4_C5AAAAA00410.43 AA00
0432ldl-m4_A_U4_C5AAAAA00310.44 AA00
0442ldl-m5_A_U4_C5AAAAA00370.44 AA00
0452ldl-m6_A_U4_C5AAAAA00360.44 AA00
0462ldl-m7_A_U4_C5AAAAA00390.43 AA00
0472ldl-m8_A_U4_C5AAAAA00390.43 AA00
0482ldl-m9_A_U4_C5AAAAA00320.46 AA00
0492ldl-m10_A_C5_C6AAAAA00250.44 AA00
0502ldl-m11_A_C5_C6AAAAA00180.45 AA00
0512ldl-m12_A_C5_C6AAAAA00220.44 AA00
0522ldl-m1_A_C5_C6AAAAA00260.43 AA00
0532ldl-m2_A_C5_C6AAAAA00240.44 AA00
0542ldl-m3_A_C5_C6AAAAA00280.43 AA00
0552ldl-m4_A_C5_C6AAAAA00200.45 AA00
0562ldl-m5_A_C5_C6AAAAA00250.44 AA00
0572ldl-m6_A_C5_C6AAAAA00240.43 AA00
0582ldl-m7_A_C5_C6AAAAA00260.44 AA00
0592ldl-m8_A_C5_C6AAAAA00300.42 AA00
0602ldl-m9_A_C5_C6AAAAA00220.44 AA00
0612ldl-m10_A_C6_A7AAAAA00200.42 AA00
0622ldl-m11_A_C6_A7AAAAA00190.40 AA00
0632ldl-m12_A_C6_A7AAAAA00190.40 AA00
0642ldl-m1_A_C6_A7AAAAA00200.42 AA00
0652ldl-m2_A_C6_A7AAAAA00190.42 AA00
0662ldl-m3_A_C6_A7AAAAA00200.43 AA00
0672ldl-m4_A_C6_A7AAAAA00190.41 AA00
0682ldl-m5_A_C6_A7AAAAA00200.42 AA00
0692ldl-m6_A_C6_A7AAAAA00200.41 AA00
0702ldl-m7_A_C6_A7AAAAA00200.42 AA00
0712ldl-m8_A_C6_A7AAAAA00210.42 AA00
0722ldl-m9_A_C6_A7AAAAA00210.43 AA00
0732ldl-m10_A_A7_U8AAAAA00450.52 AA00
0742ldl-m11_A_A7_U8AAAAA00570.40 AA00
0752ldl-m12_A_A7_U8AAAAA00440.46 AA00
0762ldl-m1_A_A7_U8AAAAA00430.53 AA00
0772ldl-m2_A_A7_U8AAAAA00460.53 AA00
0782ldl-m3_A_A7_U8AAAAA00430.54 AA00
0792ldl-m4_A_A7_U8AAAAA00400.53 AA00
0802ldl-m5_A_A7_U8AAAAA00430.53 AA00
0812ldl-m6_A_A7_U8AAAAA00400.53 AA00
0822ldl-m7_A_A7_U8AAAAA00400.54 AA00
0832ldl-m8_A_A7_U8AAAAA00430.54 AA00
0842ldl-m9_A_A7_U8AAAAA00420.53 AA00
0852ldl-m10_A_U8_U9AAAAA00180.45 AA00
0862ldl-m11_A_U8_U9AAAAA00430.38 AA00
0872ldl-m12_A_U8_U9AAAAA00490.37 AA00
0882ldl-m1_A_U8_U9AAAAA00180.45 AA00
0892ldl-m2_A_U8_U9AAAAA00170.45 AA00
0902ldl-m3_A_U8_U9AAAAA00180.44 AA00
0912ldl-m4_A_U8_U9AAAAA00190.44 AA00
0922ldl-m5_A_U8_U9AAAAA00180.44 AA00
0932ldl-m6_A_U8_U9AAAAA00190.44 AA00
0942ldl-m7_A_U8_U9AAAAA00180.45 AA00
0952ldl-m8_A_U8_U9AAAAA00180.44 AA00
0962ldl-m9_A_U8_U9AAAAA00190.44 AA00
0972ldl-m10_A_U9_C10NANNANT00.47 AA00
0982ldl-m11_A_U9_C10AAAAA00370.45 AA00
0992ldl-m12_A_U9_C10AAAAA00360.45 AA00
1002ldl-m1_A_U9_C10AAAAA02410.57 AA02
1012ldl-m2_A_U9_C10NANNANT00.45 AA00
1022ldl-m3_A_U9_C10AAAAA02390.57 AA02
1032ldl-m4_A_U9_C10AAAAA02390.59 AA02
1042ldl-m5_A_U9_C10AAAAA02410.57 AA02
1052ldl-m6_A_U9_C10AAAAA02410.58 AA02
1062ldl-m7_A_U9_C10AAAAA02400.58 AA02
1072ldl-m8_A_U9_C10AAAAA02380.57 AA02
1082ldl-m9_A_U9_C10AAAAA02370.59 AA02
1092ldl-m10_A_C10_G11AAAAA00220.36 AA00
1102ldl-m11_A_C10_G11AAAAA00140.39 AA00
1112ldl-m12_A_C10_G11AAAAA00220.38 AA00
1122ldl-m1_A_C10_G11AAAAA00200.35 AA00
1132ldl-m2_A_C10_G11AAAAA00240.34 AA00
1142ldl-m3_A_C10_G11AAAAA02590.35 AA02
1152ldl-m4_A_C10_G11AAAAA00190.37 AA00
1162ldl-m5_A_C10_G11AAAAA00180.35 AA00
1172ldl-m6_A_C10_G11AAAAA00180.35 AA00
1182ldl-m7_A_C10_G11AAAAA02580.36 AA02
1192ldl-m8_A_C10_G11AAAAA00250.34 AA00
1202ldl-m9_A_C10_G11AAAAA00150.37 AA00
1212ldl-m10_A_G11_A12AAAAA00180.37 AA00
1222ldl-m11_A_G11_A12AAAAA00280.36 AA00
1232ldl-m12_A_G11_A12AAAAA00260.36 AA00
1242ldl-m1_A_G11_A12AAAAA00340.35 AA00
1252ldl-m2_A_G11_A12AAAAA00180.38 AA00
1262ldl-m3_A_G11_A12AAAAA00260.35 AA00
1272ldl-m4_A_G11_A12AAAAA00210.37 AA00
1282ldl-m5_A_G11_A12AAAAA00310.36 AA00
1292ldl-m6_A_G11_A12AAAAA00300.36 AA00
1302ldl-m7_A_G11_A12AAAAA00230.36 AA00
1312ldl-m8_A_G11_A12AAAAA00240.36 AA00
1322ldl-m9_A_G11_A12AAAAA00320.35 AA00
1332ldl-m10_A_A12_U13A-BAB01130.28 AB01
1342ldl-m11_A_A12_U13A-BAB0190.30 AB01
1352ldl-m12_A_A12_U13A-BAB01130.29 AB01
1362ldl-m1_A_A12_U13A-BAB0190.31 AB01
1372ldl-m2_A_A12_U13A-BAB01120.31 AB01
1382ldl-m3_A_A12_U13A-BAB01100.29 AB01
1392ldl-m4_A_A12_U13A-BAB01110.28 AB01
1402ldl-m5_A_A12_U13A-BAB0170.29 AB01
1412ldl-m6_A_A12_U13A-BAB0190.28 AB01
1422ldl-m7_A_A12_U13A-BAB01130.28 AB01
1432ldl-m8_A_A12_U13A-BAB01130.29 AB01
1442ldl-m9_A_A12_U13A-BAB0190.29 AB01
1452ldl-m10_A_U13_U14NANNANT00.90 OP09
1462ldl-m11_A_U13_U14NANNANT01.04 OP18
1472ldl-m12_A_U13_U14NANNANT01.04 OP18
1482ldl-m1_A_U13_U14NANNANT01.06 OP18
1492ldl-m2_A_U13_U14NANNANT01.05 OP18
1502ldl-m3_A_U13_U14NANNANT01.03 OP18
1512ldl-m4_A_U13_U14NANNANT01.06 OP18
1522ldl-m5_A_U13_U14NANNANT01.06 OP18
1532ldl-m6_A_U13_U14NANNANT01.04 OP18
1542ldl-m7_A_U13_U14NANNANT01.04 OP18
1552ldl-m8_A_U13_U14NANNANT01.04 OP18
1562ldl-m9_A_U13_U14NANNANT01.05 OP18
1572ldl-m10_A_U14_A15NANNANT00.90 BB08
1582ldl-m11_A_U14_A15NANNANT00.91 BB08
1592ldl-m12_A_U14_A15NANNANT00.91 BB08
1602ldl-m1_A_U14_A15NANNANT00.90 BB08
1612ldl-m2_A_U14_A15NANNANT00.89 BB08
1622ldl-m3_A_U14_A15NANNANT00.88 BB08
1632ldl-m4_A_U14_A15NANNANT00.88 BB08
1642ldl-m5_A_U14_A15NANNANT00.88 BB08
1652ldl-m6_A_U14_A15NANNANT00.90 BB08
1662ldl-m7_A_U14_A15NANNANT00.88 BB08
1672ldl-m8_A_U14_A15NANNANT00.89 BB08
1682ldl-m9_A_U14_A15NANNANT00.89 BB08
1692ldl-m10_A_A15_G16NANNANT01.67 AB02
1702ldl-m11_A_A15_G16NANNANT01.67 AB02
1712ldl-m12_A_A15_G16NANNANT01.67 AB02
1722ldl-m1_A_A15_G16NANNANT01.68 AB02
1732ldl-m2_A_A15_G16NANNANT01.68 AB02
1742ldl-m3_A_A15_G16NANNANT01.66 AB02
1752ldl-m4_A_A15_G16NANNANT01.67 AB02
1762ldl-m5_A_A15_G16NANNANT01.69 AB02
1772ldl-m6_A_A15_G16NANNANT01.68 AB02
1782ldl-m7_A_A15_G16NANNANT01.69 AB02
1792ldl-m8_A_A15_G16NANNANT01.68 AB02
1802ldl-m9_A_A15_G16NANNANT01.68 AB02
1812ldl-m10_A_G16_U17NANNANT01.17 AA06
1822ldl-m11_A_G16_U17NANNANT01.19 AA06
1832ldl-m12_A_G16_U17NANNANT01.24 AA06
1842ldl-m1_A_G16_U17NANNANT00.85 AA10
1852ldl-m2_A_G16_U17NANNANT01.24 AA06
1862ldl-m3_A_G16_U17NANNANT01.23 AA06
1872ldl-m4_A_G16_U17NANNANT01.24 AA06
1882ldl-m5_A_G16_U17NANNANT00.87 AA10
1892ldl-m6_A_G16_U17NANNANT00.85 AA10
1902ldl-m7_A_G16_U17NANNANT00.84 AA10
1912ldl-m8_A_G16_U17NANNANT01.21 AA06
1922ldl-m9_A_G16_U17NANNANT01.20 AA06
1932ldl-m10_A_U17_G18NANNANT00.77 OP16
1942ldl-m11_A_U17_G18NANNANT00.75 OP16
1952ldl-m12_A_U17_G18NANNANT00.72 OP16
1962ldl-m1_A_U17_G18NANNANT00.81 OP26
1972ldl-m2_A_U17_G18NANNANT00.74 OP16
1982ldl-m3_A_U17_G18NANNANT00.73 OP16
1992ldl-m4_A_U17_G18NANNANT00.74 OP16
2002ldl-m5_A_U17_G18NANNANT00.83 OP26
2012ldl-m6_A_U17_G18NANNANT00.81 OP26
2022ldl-m7_A_U17_G18NANNANT00.77 OP26
2032ldl-m8_A_U17_G18NANNANT00.74 OP16
2042ldl-m9_A_U17_G18NANNANT00.79 OP16
2052ldl-m10_A_G18_A19AAAAA00430.42 AA00
2062ldl-m11_A_G18_A19AAAAA00370.41 AA00
2072ldl-m12_A_G18_A19AAAAA00380.38 AA00
2082ldl-m1_A_G18_A19AAAAA00360.41 AA00
2092ldl-m2_A_G18_A19AAAAA00370.42 AA00
2102ldl-m3_A_G18_A19AAAAA00380.38 AA00
2112ldl-m4_A_G18_A19AAAAA00350.40 AA00
2122ldl-m5_A_G18_A19AAAAA00370.40 AA00
2132ldl-m6_A_G18_A19AAAAA00400.40 AA00
2142ldl-m7_A_G18_A19AAAAA00420.41 AA00
2152ldl-m8_A_G18_A19AAAAA00440.41 AA00
2162ldl-m9_A_G18_A19AAAAA00430.39 AA00
2172ldl-m10_A_A19_A20AAAAA00500.31 AA00
2182ldl-m11_A_A19_A20AAAAA00500.29 AA00
2192ldl-m12_A_A19_A20AAAAA00540.30 AA00
2202ldl-m1_A_A19_A20AAAAA00540.29 AA00
2212ldl-m2_A_A19_A20AAAAA00550.29 AA00
2222ldl-m3_A_A19_A20AAAAA00440.31 AA00
2232ldl-m4_A_A19_A20AAAAA00440.30 AA00
2242ldl-m5_A_A19_A20AAAAA00490.29 AA00
2252ldl-m6_A_A19_A20AAAAA00450.31 AA00
2262ldl-m7_A_A19_A20AAAAA00450.31 AA00
2272ldl-m8_A_A19_A20AAAAA00410.33 AA00
2282ldl-m9_A_A19_A20AAAAA00380.33 AA00
2292ldl-m10_A_A20_C21AAAAA04650.28 AA04
2302ldl-m11_A_A20_C21AAAAA04650.30 AA04
2312ldl-m12_A_A20_C21AAAAA04620.28 AA04
2322ldl-m1_A_A20_C21AAAAA00180.37 AA00
2332ldl-m2_A_A20_C21AAAAA00190.37 AA00
2342ldl-m3_A_A20_C21AAAAA00170.37 AA00
2352ldl-m4_A_A20_C21AAAAA00180.36 AA00
2362ldl-m5_A_A20_C21AAAAA00180.37 AA00
2372ldl-m6_A_A20_C21AAAAA00180.37 AA00
2382ldl-m7_A_A20_C21AAAAA00190.36 AA00
2392ldl-m8_A_A20_C21AAAAA00170.36 AA00
2402ldl-m9_A_A20_C21AAAAA00170.39 AA00
2412ldl-m10_A_C21_G22AAAAA00540.34 AA00
2422ldl-m11_A_C21_G22AAAAA00550.34 AA00
2432ldl-m12_A_C21_G22AAAAA00560.32 AA00
2442ldl-m1_A_C21_G22AAAAA00590.33 AA00
2452ldl-m2_A_C21_G22AAAAA00670.33 AA00
2462ldl-m3_A_C21_G22AAAAA00600.32 AA00
2472ldl-m4_A_C21_G22AAAAA00740.31 AA00
2482ldl-m5_A_C21_G22AAAAA00530.34 AA00
2492ldl-m6_A_C21_G22AAAAA00560.34 AA00
2502ldl-m7_A_C21_G22AAAAA00660.33 AA00
2512ldl-m8_A_C21_G22AAAAA00470.32 AA00
2522ldl-m9_A_C21_G22AAAAA00590.31 AA00
2532ldl-m10_A_G22_G23AAAAA00400.33 AA00
2542ldl-m11_A_G22_G23AAAAA00490.33 AA00
2552ldl-m12_A_G22_G23AAAAA00640.30 AA00
2562ldl-m1_A_G22_G23AAAAA00310.34 AA00
2572ldl-m2_A_G22_G23AAAAA00590.31 AA00
2582ldl-m3_A_G22_G23AAAAA00250.34 AA00
2592ldl-m4_A_G22_G23AAAAA00610.30 AA00
2602ldl-m5_A_G22_G23AAAAA00380.33 AA00
2612ldl-m6_A_G22_G23AAAAA00700.29 AA00
2622ldl-m7_A_G22_G23AAAAA00640.31 AA00
2632ldl-m8_A_G22_G23AAAAA00750.28 AA00
2642ldl-m9_A_G22_G23AAAAA00650.30 AA00
2652ldl-m10_A_G23_A24AAAAA00560.35 AA00
2662ldl-m11_A_G23_A24AAAAA00530.35 AA00
2672ldl-m12_A_G23_A24AAAAA00500.35 AA00
2682ldl-m1_A_G23_A24AAAAA00590.35 AA00
2692ldl-m2_A_G23_A24AAAAA00530.35 AA00
2702ldl-m3_A_G23_A24AAAAA00610.35 AA00
2712ldl-m4_A_G23_A24AAAAA00500.35 AA00
2722ldl-m5_A_G23_A24AAAAA00590.34 AA00
2732ldl-m6_A_G23_A24AAAAA00530.34 AA00
2742ldl-m7_A_G23_A24AAAAA00490.35 AA00
2752ldl-m8_A_G23_A24AAAAA00590.34 AA00
2762ldl-m9_A_G23_A24AAAAA00490.35 AA00
2772ldl-m10_A_A24_U25AAAAA00170.46 AA00
2782ldl-m11_A_A24_U25AAAAA00180.45 AA00
2792ldl-m12_A_A24_U25AAAAA00180.44 AA00
2802ldl-m1_A_A24_U25AAAAA00170.45 AA00
2812ldl-m2_A_A24_U25AAAAA00170.45 AA00
2822ldl-m3_A_A24_U25AAAAA00180.45 AA00
2832ldl-m4_A_A24_U25AAAAA00180.45 AA00
2842ldl-m5_A_A24_U25AAAAA00170.45 AA00
2852ldl-m6_A_A24_U25AAAAA00180.45 AA00
2862ldl-m7_A_A24_U25AAAAA00170.45 AA00
2872ldl-m8_A_A24_U25AAAAA00180.45 AA00
2882ldl-m9_A_A24_U25AAAAA00160.46 AA00
2892ldl-m10_A_U25_C26AAAAA02480.54 AA02
2902ldl-m11_A_U25_C26AAAAA02470.55 AA02
2912ldl-m12_A_U25_C26AAAAA02460.56 AA02
2922ldl-m1_A_U25_C26AAAAA02490.55 AA02
2932ldl-m2_A_U25_C26AAAAA02480.55 AA02
2942ldl-m3_A_U25_C26AAAAA02470.56 AA02
2952ldl-m4_A_U25_C26AAAAA02460.56 AA02
2962ldl-m5_A_U25_C26AAAAA02490.54 AA02
2972ldl-m6_A_U25_C26AAAAA02480.55 AA02
2982ldl-m7_A_U25_C26AAAAA02480.55 AA02
2992ldl-m8_A_U25_C26AAAAA02480.55 AA02
3002ldl-m9_A_U25_C26AAAAA02480.54 AA02
3012ldl-m10_A_C26_C27AAAAA04290.32 AA04
3022ldl-m11_A_C26_C27AAAAA04290.32 AA04
3032ldl-m12_A_C26_C27AAAAA04290.33 AA04
3042ldl-m1_A_C26_C27AAAAA04280.32 AA04
3052ldl-m2_A_C26_C27AAAAA04280.33 AA04
3062ldl-m3_A_C26_C27AAAAA04310.34 AA04
3072ldl-m4_A_C26_C27AAAAA04300.33 AA04
3082ldl-m5_A_C26_C27AAAAA04280.32 AA04
3092ldl-m6_A_C26_C27AAAAA04280.32 AA04
3102ldl-m7_A_C26_C27AAAAA04290.32 AA04
3112ldl-m8_A_C26_C27AAAAA04290.33 AA04
3122ldl-m9_A_C26_C27AAAAA04300.32 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

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Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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