DNATCO v4.1: results

Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR

Results of the assignment of 112 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2lbr-m1_A_G1_G2	AAA	AA02	50	0.42	AA02
002	2lbr-m2_A_G1_G2	AAA	AA02	44	0.45	AA02
003	2lbr-m3_A_G1_G2	AAA	AA02	48	0.40	AA02
004	2lbr-m4_A_G1_G2	AAA	AA02	49	0.41	AA02
005	2lbr-m5_A_G1_G2	AAA	AA02	37	0.46	AA02
006	2lbr-m6_A_G1_G2	AAA	AA02	9	0.51	AA02
007	2lbr-m7_A_G1_G2	AAA	AA02	49	0.42	AA02
008	2lbr-m8_A_G1_G2	AAA	AA02	47	0.43	AA02
009	2lbr-m1_A_G2_G3	AAA	AA00	7	0.39	AA00
010	2lbr-m2_A_G2_G3	AAA	AA04	40	0.30	AA04
011	2lbr-m3_A_G2_G3	AAA	AA02	25	0.39	AA02
012	2lbr-m4_A_G2_G3	AAA	AA00	8	0.39	AA00
013	2lbr-m5_A_G2_G3	AAA	AA04	61	0.32	AA04
014	2lbr-m6_A_G2_G3	AAA	AA09	74	0.18	AA09
015	2lbr-m7_A_G2_G3	AAA	AA00	7	0.40	AA00
016	2lbr-m8_A_G2_G3	AAA	AA04	38	0.31	AA04
017	2lbr-m1_A_G3_G4	AAA	AA04	50	0.45	AA04
018	2lbr-m2_A_G3_G4	AAA	AA04	46	0.47	AA04
019	2lbr-m3_A_G3_G4	AAA	AA04	63	0.41	AA04
020	2lbr-m4_A_G3_G4	AAA	AA04	63	0.40	AA04
021	2lbr-m5_A_G3_G4	AAA	AA04	51	0.47	AA04
022	2lbr-m6_A_G3_G4	AAA	AA04	52	0.43	AA04
023	2lbr-m7_A_G3_G4	AAA	AA04	49	0.46	AA04
024	2lbr-m8_A_G3_G4	AAA	AA04	59	0.44	AA04
025	2lbr-m1_A_G4_A5	AAA	AA04	35	0.47	AA04
026	2lbr-m2_A_G4_A5	AAA	AA04	39	0.49	AA04
027	2lbr-m3_A_G4_A5	AAA	AA04	42	0.44	AA04
028	2lbr-m4_A_G4_A5	AAA	AA04	49	0.42	AA04
029	2lbr-m5_A_G4_A5	AAA	AA04	48	0.41	AA04
030	2lbr-m6_A_G4_A5	AAA	AA04	39	0.44	AA04
031	2lbr-m7_A_G4_A5	AAA	AA04	39	0.47	AA04
032	2lbr-m8_A_G4_A5	AAA	AA04	43	0.46	AA04
033	2lbr-m1_A_A5_C6	AAA	AA08	16	0.66	AA08
034	2lbr-m2_A_A5_C6	AAA	AA08	28	0.56	AA08
035	2lbr-m3_A_A5_C6	NAN	NANT	0	0.78	AA04
036	2lbr-m4_A_A5_C6	AAA	AA08	39	0.54	AA08
037	2lbr-m5_A_A5_C6	AAA	AA08	39	0.53	AA08
038	2lbr-m6_A_A5_C6	AAA	AA04	11	0.69	AA04
039	2lbr-m7_A_A5_C6	AAA	AA08	17	0.61	AA08
040	2lbr-m8_A_A5_C6	AAA	AA08	19	0.59	AA08
041	2lbr-m1_A_C6_U7	NAN	NANT	0	0.87	AA04
042	2lbr-m2_A_C6_U7	NAN	NANT	0	0.89	AA04
043	2lbr-m3_A_C6_U7	NAN	NANT	0	0.92	AA04
044	2lbr-m4_A_C6_U7	NAN	NANT	0	0.86	AA08
045	2lbr-m5_A_C6_U7	NAN	NANT	0	0.88	AA04
046	2lbr-m6_A_C6_U7	NAN	NANT	0	0.93	AA04
047	2lbr-m7_A_C6_U7	AAA	AA08	10	0.57	AA08
048	2lbr-m8_A_C6_U7	NAN	NANT	0	0.92	AA04
049	2lbr-m1_A_U7_G8	NAN	NANT	0	0.57	AA05
050	2lbr-m2_A_U7_G8	NAN	NANT	0	0.50	AA05
051	2lbr-m3_A_U7_G8	NAN	NANT	0	0.83	AA04
052	2lbr-m4_A_U7_G8	NAN	NANT	0	0.51	AA05
053	2lbr-m5_A_U7_G8	NAN	NANT	0	0.51	AA05
054	2lbr-m6_A_U7_G8	NAN	NANT	0	0.64	AA05
055	2lbr-m7_A_U7_G8	NAN	NANT	0	0.53	AA05
056	2lbr-m8_A_U7_G8	NAN	NANT	0	0.51	AA05
057	2lbr-m1_A_G8_U9	NAN	NANT	0	2.03	OP27
058	2lbr-m2_A_G8_U9	NAN	NANT	0	1.61	AB02
059	2lbr-m3_A_G8_U9	NAN	NANT	0	1.74	OP19
060	2lbr-m4_A_G8_U9	NAN	NANT	0	0.84	BB08
061	2lbr-m5_A_G8_U9	NAN	NANT	0	0.84	BB08
062	2lbr-m6_A_G8_U9	NAN	NANT	0	2.26	BB11
063	2lbr-m7_A_G8_U9	NAN	NANT	0	0.84	BB08
064	2lbr-m8_A_G8_U9	NAN	NANT	0	1.20	OP07
065	2lbr-m1_A_U9_A10	NAN	NANT	0	1.50	OP27
066	2lbr-m2_A_U9_A10	NAN	NANT	0	1.61	IC07
067	2lbr-m3_A_U9_A10	NAN	NANT	0	2.38	OP23
068	2lbr-m4_A_U9_A10	NAN	NANT	0	0.86	OP27
069	2lbr-m5_A_U9_A10	NAN	NANT	0	0.85	OP27
070	2lbr-m6_A_U9_A10	NAN	NANT	0	1.70	BA09
071	2lbr-m7_A_U9_A10	NAN	NANT	0	0.71	OP27
072	2lbr-m8_A_U9_A10	NAN	NANT	0	0.87	OP19
073	2lbr-m1_A_A10_6IA11	AAA	AA08	15	0.58	AA08
074	2lbr-m2_A_A10_6IA11	AAA	AA08	13	0.60	AA08
075	2lbr-m3_A_A10_6IA11	AAA	AA08	27	0.65	AA08
076	2lbr-m4_A_A10_6IA11	AAA	AA08	25	0.58	AA08
077	2lbr-m5_A_A10_6IA11	AAA	AA08	23	0.61	AA08
078	2lbr-m6_A_A10_6IA11	AAA	AA08	23	0.60	AA08
079	2lbr-m7_A_A10_6IA11	AAA	AA08	7	0.67	AA08
080	2lbr-m8_A_A10_6IA11	AAA	AA08	10	0.62	AA08
081	2lbr-m1_A_6IA11_A12	AAA	AA04	42	0.47	AA04
082	2lbr-m2_A_6IA11_A12	NAN	NANT	0	0.51	AA04
083	2lbr-m3_A_6IA11_A12	AAA	AA08	24	0.58	AA08
084	2lbr-m4_A_6IA11_A12	AAA	AA08	24	0.48	AA08
085	2lbr-m5_A_6IA11_A12	AAA	AA04	42	0.46	AA04
086	2lbr-m6_A_6IA11_A12	AAA	AA08	24	0.48	AA08
087	2lbr-m7_A_6IA11_A12	AAA	AA04	40	0.47	AA04
088	2lbr-m8_A_6IA11_A12	AAA	AA04	40	0.49	AA04
089	2lbr-m1_A_C14_C15	NAN	NANT	0	0.62	AA04
090	2lbr-m2_A_C14_C15	NAN	NANT	0	0.61	AA04
091	2lbr-m3_A_C14_C15	NAN	NANT	0	0.56	AA04
092	2lbr-m4_A_C14_C15	NAN	NANT	0	0.56	AA04
093	2lbr-m5_A_C14_C15	NAN	NANT	0	0.57	AA04
094	2lbr-m6_A_C14_C15	NAN	NANT	0	0.60	AA04
095	2lbr-m7_A_C14_C15	NAN	NANT	0	0.64	AA04
096	2lbr-m8_A_C14_C15	NAN	NANT	0	0.60	AA04
097	2lbr-m1_A_C15_C16	AAA	AA08	64	0.30	AA08
098	2lbr-m2_A_C15_C16	AAA	AA08	53	0.30	AA08
099	2lbr-m3_A_C15_C16	AAA	AA08	78	0.27	AA08
100	2lbr-m4_A_C15_C16	AAA	AA08	75	0.29	AA08
101	2lbr-m5_A_C15_C16	AAA	AA08	38	0.46	AA08
102	2lbr-m6_A_C15_C16	AAA	AA08	65	0.37	AA08
103	2lbr-m7_A_C15_C16	AAA	AA08	57	0.31	AA08
104	2lbr-m8_A_C15_C16	AAA	AA08	53	0.31	AA08
105	2lbr-m1_A_C16_C17	NAN	NANT	0	0.63	AA04
106	2lbr-m2_A_C16_C17	AAA	AA03	45	0.48	AA03
107	2lbr-m3_A_C16_C17	NAN	NANT	0	0.59	AA04
108	2lbr-m4_A_C16_C17	AAA	AA08	65	0.42	AA08
109	2lbr-m5_A_C16_C17	AAA	AA08	68	0.39	AA08
110	2lbr-m6_A_C16_C17	AAA	AA08	12	0.46	AA08
111	2lbr-m7_A_C16_C17	NAN	NANT	0	0.65	AA04
112	2lbr-m8_A_C16_C17	NAN	NANT	0	0.65	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 112 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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