DNATCO v4.1: results

Unmodified Glycyl-tRNA(UCC) anticodon stem-loop from Bacillus subtilis

Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2lbl-m1_A_G1_G2	AAA	AA00	45	0.36	AA00
002	2lbl-m2_A_G1_G2	AAA	AA00	29	0.42	AA00
003	2lbl-m3_A_G1_G2	AAA	AA00	57	0.31	AA00
004	2lbl-m4_A_G1_G2	AAA	AA00	54	0.34	AA00
005	2lbl-m5_A_G1_G2	AAA	AA00	50	0.34	AA00
006	2lbl-m6_A_G1_G2	AAA	AA00	54	0.31	AA00
007	2lbl-m7_A_G1_G2	AAA	AA00	32	0.37	AA00
008	2lbl-m8_A_G1_G2	AAA	AA00	47	0.35	AA00
009	2lbl-m1_A_G2_G3	AAA	AA00	22	0.38	AA00
010	2lbl-m2_A_G2_G3	AAA	AA00	9	0.44	AA00
011	2lbl-m3_A_G2_G3	AAA	AA00	23	0.37	AA00
012	2lbl-m4_A_G2_G3	AAA	AA00	25	0.30	AA00
013	2lbl-m5_A_G2_G3	AAA	AA00	20	0.41	AA00
014	2lbl-m6_A_G2_G3	AAA	AA00	23	0.37	AA00
015	2lbl-m7_A_G2_G3	AAA	AA00	21	0.39	AA00
016	2lbl-m8_A_G2_G3	AAA	AA00	23	0.33	AA00
017	2lbl-m1_A_G3_A4	AAA	AA00	55	0.29	AA00
018	2lbl-m2_A_G3_A4	AAA	AA00	23	0.36	AA00
019	2lbl-m3_A_G3_A4	AAA	AA00	33	0.30	AA00
020	2lbl-m4_A_G3_A4	AAA	AA00	28	0.30	AA00
021	2lbl-m5_A_G3_A4	AAA	AA00	50	0.32	AA00
022	2lbl-m6_A_G3_A4	AAA	AA00	57	0.29	AA00
023	2lbl-m7_A_G3_A4	AAA	AA00	34	0.34	AA00
024	2lbl-m8_A_G3_A4	AAA	AA00	31	0.29	AA00
025	2lbl-m1_A_A4_C5	AAA	AA00	25	0.29	AA00
026	2lbl-m2_A_A4_C5	AAA	AA00	25	0.29	AA00
027	2lbl-m3_A_A4_C5	AAA	AA00	24	0.33	AA00
028	2lbl-m4_A_A4_C5	AAA	AA00	23	0.33	AA00
029	2lbl-m5_A_A4_C5	AAA	AA00	26	0.29	AA00
030	2lbl-m6_A_A4_C5	AAA	AA00	19	0.39	AA00
031	2lbl-m7_A_A4_C5	AAA	AA00	25	0.35	AA00
032	2lbl-m8_A_A4_C5	AAA	AA00	20	0.37	AA00
033	2lbl-m1_A_C5_C6	AAA	AA00	30	0.33	AA00
034	2lbl-m2_A_C5_C6	AAA	AA00	28	0.33	AA00
035	2lbl-m3_A_C5_C6	AAA	AA04	61	0.44	AA04
036	2lbl-m4_A_C5_C6	AAA	AA08	46	0.37	AA08
037	2lbl-m5_A_C5_C6	AAA	AA08	41	0.48	AA08
038	2lbl-m6_A_C5_C6	AAA	AA08	42	0.23	AA08
039	2lbl-m7_A_C5_C6	AAA	AA00	25	0.30	AA00
040	2lbl-m8_A_C5_C6	AAA	AA00	19	0.41	AA00
041	2lbl-m1_A_C6_U7	AAA	AA00	18	0.43	AA00
042	2lbl-m2_A_C6_U7	AAA	AA08	44	0.26	AA08
043	2lbl-m3_A_C6_U7	AAA	AA08	50	0.29	AA08
044	2lbl-m4_A_C6_U7	AAA	AA00	28	0.37	AA00
045	2lbl-m5_A_C6_U7	AAA	AA00	25	0.34	AA00
046	2lbl-m6_A_C6_U7	AAA	AA04	69	0.30	AA04
047	2lbl-m7_A_C6_U7	AAA	AA04	69	0.34	AA04
048	2lbl-m8_A_C6_U7	AAA	AA00	27	0.34	AA00
049	2lbl-m1_A_U7_U8	AAw	AA01	40	0.34	AA01
050	2lbl-m2_A_U7_U8	AAA	AA04	66	0.39	AA04
051	2lbl-m3_A_U7_U8	AAA	AA04	73	0.37	AA04
052	2lbl-m4_A_U7_U8	AAw	AA01	44	0.23	AA01
053	2lbl-m5_A_U7_U8	AAw	AA01	40	0.29	AA01
054	2lbl-m6_A_U7_U8	AAw	AA01	18	0.41	AA01
055	2lbl-m7_A_U7_U8	AAw	AA01	34	0.39	AA01
056	2lbl-m8_A_U7_U8	AAA	AA04	68	0.36	AA04
057	2lbl-m1_A_U8_C9	NAN	NANT	0	0.65	OP04
058	2lbl-m2_A_U8_C9	NAN	NANT	0	0.63	OP04
059	2lbl-m3_A_U8_C9	NAN	NANT	0	0.75	OP04
060	2lbl-m4_A_U8_C9	NAN	NANT	0	0.70	OP04
061	2lbl-m5_A_U8_C9	NAN	NANT	0	0.37	OP04
062	2lbl-m6_A_U8_C9	NAN	NANT	0	0.74	OP04
063	2lbl-m7_A_U8_C9	NAN	NANT	0	0.71	OP04
064	2lbl-m8_A_U8_C9	NAN	NANT	0	0.58	OP04
065	2lbl-m1_A_C9_C10	AAw	AA01	28	0.36	AA01
066	2lbl-m2_A_C9_C10	AAw	AA01	12	0.45	AA01
067	2lbl-m3_A_C9_C10	AAw	AA01	37	0.38	AA01
068	2lbl-m4_A_C9_C10	AAw	AA01	40	0.36	AA01
069	2lbl-m5_A_C9_C10	AAw	AA01	10	0.51	AA01
070	2lbl-m6_A_C9_C10	NAN	NANT	0	0.69	AA01
071	2lbl-m7_A_C9_C10	AAA	AA00	37	0.36	AA00
072	2lbl-m8_A_C9_C10	AAw	AA01	48	0.35	AA01
073	2lbl-m1_A_C10_A11	AAA	AA04	72	0.34	AA04
074	2lbl-m2_A_C10_A11	AAA	AA04	49	0.50	AA04
075	2lbl-m3_A_C10_A11	AAA	AA04	35	0.57	AA04
076	2lbl-m4_A_C10_A11	AAA	AA04	72	0.40	AA04
077	2lbl-m5_A_C10_A11	AAA	AA04	29	0.60	AA04
078	2lbl-m6_A_C10_A11	AAA	AA04	27	0.64	AA04
079	2lbl-m7_A_C10_A11	AAw	AA01	36	0.23	AA01
080	2lbl-m8_A_C10_A11	AAA	AA04	55	0.48	AA04
081	2lbl-m1_A_A11_A12	AAA	AA04	34	0.59	AA04
082	2lbl-m2_A_A11_A12	AAA	AA04	36	0.59	AA04
083	2lbl-m3_A_A11_A12	AAA	AA08	15	0.57	AA08
084	2lbl-m4_A_A11_A12	AAA	AA08	17	0.56	AA08
085	2lbl-m5_A_A11_A12	AAA	AA04	36	0.58	AA04
086	2lbl-m6_A_A11_A12	AAA	AA04	38	0.58	AA04
087	2lbl-m7_A_A11_A12	AAA	AA08	14	0.60	AA08
088	2lbl-m8_A_A11_A12	AAA	AA08	14	0.60	AA08
089	2lbl-m1_A_A12_G13	AAA	AA04	62	0.38	AA04
090	2lbl-m2_A_A12_G13	AAA	AA04	75	0.33	AA04
091	2lbl-m3_A_A12_G13	AAA	AA04	75	0.29	AA04
092	2lbl-m4_A_A12_G13	AAA	AA04	60	0.38	AA04
093	2lbl-m5_A_A12_G13	AAA	AA04	65	0.38	AA04
094	2lbl-m6_A_A12_G13	AAA	AA04	67	0.36	AA04
095	2lbl-m7_A_A12_G13	AAA	AA04	73	0.33	AA04
096	2lbl-m8_A_A12_G13	AAA	AA04	75	0.28	AA04
097	2lbl-m1_A_G13_U14	AAA	AA00	76	0.21	AA00
098	2lbl-m2_A_G13_U14	AAA	AA00	57	0.28	AA00
099	2lbl-m3_A_G13_U14	AAA	AA00	52	0.33	AA00
100	2lbl-m4_A_G13_U14	AAA	AA00	72	0.24	AA00
101	2lbl-m5_A_G13_U14	AAA	AA00	69	0.24	AA00
102	2lbl-m6_A_G13_U14	AAA	AA08	68	0.21	AA08
103	2lbl-m7_A_G13_U14	AAA	AA00	68	0.24	AA00
104	2lbl-m8_A_G13_U14	AAA	AA00	75	0.22	AA00
105	2lbl-m1_A_U14_C15	AAA	AA04	61	0.37	AA04
106	2lbl-m2_A_U14_C15	AAA	AA00	23	0.40	AA00
107	2lbl-m3_A_U14_C15	AAA	AA00	25	0.43	AA00
108	2lbl-m4_A_U14_C15	AAA	AA00	19	0.42	AA00
109	2lbl-m5_A_U14_C15	AAA	AA00	21	0.38	AA00
110	2lbl-m6_A_U14_C15	AAA	AA00	24	0.40	AA00
111	2lbl-m7_A_U14_C15	AAA	AA00	44	0.34	AA00
112	2lbl-m8_A_U14_C15	AAA	AA00	25	0.34	AA00
113	2lbl-m1_A_C15_U16	AAA	AA00	23	0.39	AA00
114	2lbl-m2_A_C15_U16	AAA	AA00	21	0.36	AA00
115	2lbl-m3_A_C15_U16	AAA	AA00	19	0.42	AA00
116	2lbl-m4_A_C15_U16	AAA	AA00	20	0.39	AA00
117	2lbl-m5_A_C15_U16	AAA	AA00	21	0.40	AA00
118	2lbl-m6_A_C15_U16	AAA	AA00	22	0.38	AA00
119	2lbl-m7_A_C15_U16	AAA	AA00	20	0.41	AA00
120	2lbl-m8_A_C15_U16	AAA	AA00	22	0.39	AA00
121	2lbl-m1_A_U16_C17	AAA	AA00	24	0.36	AA00
122	2lbl-m2_A_U16_C17	AAu	AA12	31	0.42	AA12
123	2lbl-m3_A_U16_C17	AAu	AA12	40	0.26	AA12
124	2lbl-m4_A_U16_C17	AAu	AA12	44	0.26	AA12
125	2lbl-m5_A_U16_C17	AAA	AA00	36	0.37	AA00
126	2lbl-m6_A_U16_C17	AAu	AA12	43	0.27	AA12
127	2lbl-m7_A_U16_C17	AAu	AA12	47	0.32	AA12
128	2lbl-m8_A_U16_C17	AAA	AA00	16	0.45	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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N

Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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