DNATCO v4.1: results

Glycyl-tRNA(UCC)1B anticodon stem-loop from Staphylococcus epidermidis

Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2lbk-m1_A_G1_G2	AAA	AA00	39	0.36	AA00
002	2lbk-m2_A_G1_G2	AAu	AA12	56	0.29	AA12
003	2lbk-m3_A_G1_G2	AAA	AA00	30	0.41	AA00
004	2lbk-m4_A_G1_G2	AAA	AA00	34	0.38	AA00
005	2lbk-m5_A_G1_G2	AAA	AA00	19	0.45	AA00
006	2lbk-m6_A_G1_G2	AAA	AA00	20	0.43	AA00
007	2lbk-m7_A_G1_G2	AAA	AA00	18	0.51	AA00
008	2lbk-m8_A_G1_G2	AAA	AA00	33	0.40	AA00
009	2lbk-m1_A_G2_G3	AAA	AA00	42	0.27	AA00
010	2lbk-m2_A_G2_G3	AAA	AA00	28	0.41	AA00
011	2lbk-m3_A_G2_G3	AAA	AA00	12	0.46	AA00
012	2lbk-m4_A_G2_G3	AAA	AA00	67	0.24	AA00
013	2lbk-m5_A_G2_G3	AAA	AA00	25	0.39	AA00
014	2lbk-m6_A_G2_G3	AAA	AA00	36	0.31	AA00
015	2lbk-m7_A_G2_G3	AAA	AA00	20	0.42	AA00
016	2lbk-m8_A_G2_G3	AAA	AA00	36	0.38	AA00
017	2lbk-m1_A_G3_A4	AAA	AA00	38	0.31	AA00
018	2lbk-m2_A_G3_A4	AAA	AA00	30	0.30	AA00
019	2lbk-m3_A_G3_A4	AAA	AA00	28	0.30	AA00
020	2lbk-m4_A_G3_A4	AAA	AA00	45	0.28	AA00
021	2lbk-m5_A_G3_A4	AAA	AA00	46	0.30	AA00
022	2lbk-m6_A_G3_A4	AAA	AA00	57	0.29	AA00
023	2lbk-m7_A_G3_A4	AAA	AA00	47	0.30	AA00
024	2lbk-m8_A_G3_A4	AAA	AA00	34	0.31	AA00
025	2lbk-m1_A_A4_C5	AAA	AA00	45	0.23	AA00
026	2lbk-m2_A_A4_C5	AAA	AA00	41	0.23	AA00
027	2lbk-m3_A_A4_C5	AAA	AA00	36	0.23	AA00
028	2lbk-m4_A_A4_C5	AAA	AA00	44	0.23	AA00
029	2lbk-m5_A_A4_C5	AAA	AA00	44	0.23	AA00
030	2lbk-m6_A_A4_C5	AAA	AA00	46	0.22	AA00
031	2lbk-m7_A_A4_C5	AAA	AA00	44	0.22	AA00
032	2lbk-m8_A_A4_C5	AAA	AA00	43	0.23	AA00
033	2lbk-m1_A_C5_C6	AAA	AA00	45	0.29	AA00
034	2lbk-m2_A_C5_C6	AAA	AA00	43	0.28	AA00
035	2lbk-m3_A_C5_C6	AAA	AA00	44	0.30	AA00
036	2lbk-m4_A_C5_C6	AAA	AA00	44	0.28	AA00
037	2lbk-m5_A_C5_C6	AAA	AA00	45	0.29	AA00
038	2lbk-m6_A_C5_C6	AAA	AA00	44	0.28	AA00
039	2lbk-m7_A_C5_C6	AAA	AA00	45	0.28	AA00
040	2lbk-m8_A_C5_C6	AAA	AA00	44	0.28	AA00
041	2lbk-m1_A_C6_U7	AAA	AA00	21	0.30	AA00
042	2lbk-m2_A_C6_U7	AAA	AA00	41	0.31	AA00
043	2lbk-m3_A_C6_U7	AAA	AA00	29	0.44	AA00
044	2lbk-m4_A_C6_U7	AAA	AA00	34	0.36	AA00
045	2lbk-m5_A_C6_U7	AAA	AA04	77	0.33	AA04
046	2lbk-m6_A_C6_U7	AAA	AA04	76	0.31	AA04
047	2lbk-m7_A_C6_U7	AAA	AA00	47	0.37	AA00
048	2lbk-m8_A_C6_U7	AAA	AA04	77	0.31	AA04
049	2lbk-m1_A_U7_U8	AAA	AA00	66	0.26	AA00
050	2lbk-m2_A_U7_U8	NAN	NANT	0	0.37	AA01
051	2lbk-m3_A_U7_U8	AAA	AA00	42	0.33	AA00
052	2lbk-m4_A_U7_U8	AAA	AA00	25	0.40	AA00
053	2lbk-m5_A_U7_U8	NAN	NANT	0	0.58	AA06
054	2lbk-m6_A_U7_U8	AAA	AA00	41	0.33	AA00
055	2lbk-m7_A_U7_U8	AAA	AA04	74	0.23	AA04
056	2lbk-m8_A_U7_U8	AAA	AA00	47	0.27	AA00
057	2lbk-m1_A_U8_C9	NAN	NANT	0	0.71	OP04
058	2lbk-m2_A_U8_C9	NAN	NANT	0	0.75	OP04
059	2lbk-m3_A_U8_C9	NAN	NANT	0	0.77	OP04
060	2lbk-m4_A_U8_C9	NAN	NANT	0	1.53	OP28
061	2lbk-m5_A_U8_C9	NAN	NANT	0	0.81	OP04
062	2lbk-m6_A_U8_C9	NAN	NANT	0	0.75	OP04
063	2lbk-m7_A_U8_C9	NAN	NANT	0	0.77	OP04
064	2lbk-m8_A_U8_C9	NAN	NANT	0	0.79	OP04
065	2lbk-m1_A_C9_C10	AAu	AA12	62	0.31	AA12
066	2lbk-m2_A_C9_C10	AAu	AA12	60	0.29	AA12
067	2lbk-m3_A_C9_C10	NAN	NANT	0	1.07	AA01
068	2lbk-m4_A_C9_C10	NAN	NANT	0	1.29	AA01
069	2lbk-m5_A_C9_C10	AAu	AA12	41	0.52	AA12
070	2lbk-m6_A_C9_C10	AAu	AA12	22	0.42	AA12
071	2lbk-m7_A_C9_C10	AAA	AA04	47	0.53	AA04
072	2lbk-m8_A_C9_C10	AAu	AA12	48	0.30	AA12
073	2lbk-m1_A_C10_C11	NAN	NANT	0	0.76	AA04
074	2lbk-m2_A_C10_C11	NAN	NANT	0	0.76	AA04
075	2lbk-m3_A_C10_C11	NAN	NANT	0	1.27	AA04
076	2lbk-m4_A_C10_C11	NAN	NANT	0	1.22	AA04
077	2lbk-m5_A_C10_C11	NAN	NANT	0	0.41	AA05
078	2lbk-m6_A_C10_C11	NAN	NANT	0	0.78	AA04
079	2lbk-m7_A_C10_C11	AAw	AA01	19	0.56	AA01
080	2lbk-m8_A_C10_C11	NAN	NANT	0	0.39	AA05
081	2lbk-m1_A_C11_G12	AAA	AA04	27	0.61	AA04
082	2lbk-m2_A_C11_G12	AAA	AA08	19	0.65	AA08
083	2lbk-m3_A_C11_G12	AAA	AA08	13	0.72	AA08
084	2lbk-m4_A_C11_G12	AAA	AA08	24	0.68	AA08
085	2lbk-m5_A_C11_G12	AAA	AA08	18	0.63	AA08
086	2lbk-m6_A_C11_G12	AAA	AA04	36	0.52	AA04
087	2lbk-m7_A_C11_G12	AAA	AA04	22	0.64	AA04
088	2lbk-m8_A_C11_G12	NAN	NANT	0	0.70	AA04
089	2lbk-m1_A_G12_G13	AAA	AA08	45	0.36	AA08
090	2lbk-m2_A_G12_G13	AAA	AA08	49	0.36	AA08
091	2lbk-m3_A_G12_G13	AAA	AA08	48	0.39	AA08
092	2lbk-m4_A_G12_G13	AAA	AA08	48	0.36	AA08
093	2lbk-m5_A_G12_G13	AAA	AA08	48	0.35	AA08
094	2lbk-m6_A_G12_G13	AAA	AA08	48	0.35	AA08
095	2lbk-m7_A_G12_G13	AAA	AA08	48	0.36	AA08
096	2lbk-m8_A_G12_G13	AAA	AA08	47	0.36	AA08
097	2lbk-m1_A_G13_U14	AAu	AA12	30	0.31	AA12
098	2lbk-m2_A_G13_U14	AAu	AA12	30	0.31	AA12
099	2lbk-m3_A_G13_U14	AAu	AA12	28	0.33	AA12
100	2lbk-m4_A_G13_U14	AAu	AA12	34	0.30	AA12
101	2lbk-m5_A_G13_U14	AAu	AA12	30	0.31	AA12
102	2lbk-m6_A_G13_U14	AAu	AA12	31	0.30	AA12
103	2lbk-m7_A_G13_U14	AAu	AA12	29	0.31	AA12
104	2lbk-m8_A_G13_U14	AAu	AA12	29	0.31	AA12
105	2lbk-m1_A_U14_C15	AAA	AA08	46	0.52	AA08
106	2lbk-m2_A_U14_C15	AAA	AA08	55	0.44	AA08
107	2lbk-m3_A_U14_C15	NAN	NANT	0	0.47	AA00
108	2lbk-m4_A_U14_C15	AAA	AA00	13	0.44	AA00
109	2lbk-m5_A_U14_C15	AAA	AA08	54	0.44	AA08
110	2lbk-m6_A_U14_C15	AAA	AA08	54	0.45	AA08
111	2lbk-m7_A_U14_C15	AAA	AA08	55	0.41	AA08
112	2lbk-m8_A_U14_C15	AAA	AA08	50	0.47	AA08
113	2lbk-m1_A_C15_U16	AAA	AA08	67	0.20	AA08
114	2lbk-m2_A_C15_U16	AAA	AA08	63	0.22	AA08
115	2lbk-m3_A_C15_U16	AAA	AA08	60	0.25	AA08
116	2lbk-m4_A_C15_U16	AAA	AA08	69	0.20	AA08
117	2lbk-m5_A_C15_U16	AAA	AA08	60	0.25	AA08
118	2lbk-m6_A_C15_U16	AAA	AA00	61	0.21	AA00
119	2lbk-m7_A_C15_U16	AAA	AA08	63	0.23	AA08
120	2lbk-m8_A_C15_U16	AAA	AA08	65	0.21	AA08
121	2lbk-m1_A_U16_C17	AAu	AA12	51	0.41	AA12
122	2lbk-m2_A_U16_C17	AAu	AA12	38	0.43	AA12
123	2lbk-m3_A_U16_C17	AAu	AA12	41	0.45	AA12
124	2lbk-m4_A_U16_C17	AAu	AA12	38	0.41	AA12
125	2lbk-m5_A_U16_C17	AAu	AA12	39	0.39	AA12
126	2lbk-m6_A_U16_C17	AAA	AA00	12	0.46	AA00
127	2lbk-m7_A_U16_C17	AAu	AA12	28	0.51	AA12
128	2lbk-m8_A_U16_C17	AAu	AA12	34	0.30	AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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