DNATCO v4.1: results

Glycyl-tRNA(GCC) anticodon stem-loop from Bacillus subtilis

Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2lbj-m1_A_G1_G2	AAA	AA00	55	0.31	AA00
002	2lbj-m2_A_G1_G2	AAA	AA00	46	0.34	AA00
003	2lbj-m3_A_G1_G2	AAA	AA00	52	0.31	AA00
004	2lbj-m4_A_G1_G2	AAA	AA00	55	0.31	AA00
005	2lbj-m5_A_G1_G2	AAA	AA00	48	0.33	AA00
006	2lbj-m6_A_G1_G2	AAA	AA00	54	0.31	AA00
007	2lbj-m7_A_G1_G2	AAA	AA00	51	0.33	AA00
008	2lbj-m8_A_G1_G2	AAA	AA00	63	0.29	AA00
009	2lbj-m1_A_G2_G3	AAA	AA08	41	0.39	AA08
010	2lbj-m2_A_G2_G3	AAA	AA00	39	0.35	AA00
011	2lbj-m3_A_G2_G3	AAA	AA00	43	0.31	AA00
012	2lbj-m4_A_G2_G3	AAA	AA00	45	0.32	AA00
013	2lbj-m5_A_G2_G3	AAA	AA00	33	0.35	AA00
014	2lbj-m6_A_G2_G3	AAA	AA00	44	0.33	AA00
015	2lbj-m7_A_G2_G3	AAA	AA00	32	0.35	AA00
016	2lbj-m8_A_G2_G3	AAA	AA00	41	0.33	AA00
017	2lbj-m1_A_G3_C4	AAA	AA00	23	0.35	AA00
018	2lbj-m2_A_G3_C4	AAA	AA00	23	0.36	AA00
019	2lbj-m3_A_G3_C4	AAA	AA00	20	0.39	AA00
020	2lbj-m4_A_G3_C4	AAA	AA00	23	0.34	AA00
021	2lbj-m5_A_G3_C4	AAA	AA00	23	0.33	AA00
022	2lbj-m6_A_G3_C4	AAA	AA00	18	0.39	AA00
023	2lbj-m7_A_G3_C4	AAA	AA00	21	0.38	AA00
024	2lbj-m8_A_G3_C4	AAA	AA00	20	0.38	AA00
025	2lbj-m1_A_C4_C5	AAA	AA00	32	0.30	AA00
026	2lbj-m2_A_C4_C5	AAA	AA08	49	0.27	AA08
027	2lbj-m3_A_C4_C5	AAA	AA00	35	0.30	AA00
028	2lbj-m4_A_C4_C5	AAA	AA00	32	0.32	AA00
029	2lbj-m5_A_C4_C5	AAA	AA00	31	0.32	AA00
030	2lbj-m6_A_C4_C5	AAA	AA08	49	0.24	AA08
031	2lbj-m7_A_C4_C5	AAA	AA00	33	0.29	AA00
032	2lbj-m8_A_C4_C5	AAA	AA08	45	0.24	AA08
033	2lbj-m1_A_C5_U6	AAu	AA12	42	0.46	AA12
034	2lbj-m2_A_C5_U6	AAu	AA12	40	0.49	AA12
035	2lbj-m3_A_C5_U6	AAu	AA12	48	0.47	AA12
036	2lbj-m4_A_C5_U6	AAA	AA00	17	0.43	AA00
037	2lbj-m5_A_C5_U6	AAA	AA00	11	0.45	AA00
038	2lbj-m6_A_C5_U6	AAA	AA00	11	0.42	AA00
039	2lbj-m7_A_C5_U6	AAA	AA00	15	0.45	AA00
040	2lbj-m8_A_C5_U6	AAu	AA12	39	0.42	AA12
041	2lbj-m1_A_U6_U7	AAA	AA04	51	0.31	AA04
042	2lbj-m2_A_U6_U7	AAA	AA04	54	0.31	AA04
043	2lbj-m3_A_U6_U7	AAA	AA04	54	0.32	AA04
044	2lbj-m4_A_U6_U7	AAA	AA00	12	0.53	AA00
045	2lbj-m5_A_U6_U7	AAA	AA00	13	0.49	AA00
046	2lbj-m6_A_U6_U7	AAA	AA04	52	0.30	AA04
047	2lbj-m7_A_U6_U7	AAA	AA00	12	0.52	AA00
048	2lbj-m8_A_U6_U7	AAA	AA04	53	0.30	AA04
049	2lbj-m1_A_U7_G8	NAN	NANT	0	0.57	AA10
050	2lbj-m2_A_U7_G8	NAN	NANT	0	0.55	AA10
051	2lbj-m3_A_U7_G8	NAN	NANT	0	0.51	AA10
052	2lbj-m4_A_U7_G8	NAN	NANT	0	0.71	AA10
053	2lbj-m5_A_U7_G8	NAN	NANT	0	0.72	AA10
054	2lbj-m6_A_U7_G8	NAN	NANT	0	0.56	AA10
055	2lbj-m7_A_U7_G8	NAN	NANT	0	0.71	AA10
056	2lbj-m8_A_U7_G8	NAN	NANT	0	0.57	AA10
057	2lbj-m1_A_G8_C9	NAN	NANT	0	0.93	AA04
058	2lbj-m2_A_G8_C9	NAN	NANT	0	0.92	AA04
059	2lbj-m3_A_G8_C9	NAN	NANT	0	0.92	AA04
060	2lbj-m4_A_G8_C9	NAN	NANT	0	0.87	AA04
061	2lbj-m5_A_G8_C9	NAN	NANT	0	0.87	AA04
062	2lbj-m6_A_G8_C9	NAN	NANT	0	0.92	AA04
063	2lbj-m7_A_G8_C9	NAN	NANT	0	0.87	AA04
064	2lbj-m8_A_G8_C9	NAN	NANT	0	0.93	AA04
065	2lbj-m1_A_C9_C10	NAN	NANT	0	0.52	AA12
066	2lbj-m2_A_C9_C10	NAN	NANT	0	0.52	AA12
067	2lbj-m3_A_C9_C10	NAN	NANT	0	0.52	AA12
068	2lbj-m4_A_C9_C10	NAN	NANT	0	0.60	AA12
069	2lbj-m5_A_C9_C10	NAN	NANT	0	0.60	AA12
070	2lbj-m6_A_C9_C10	NAN	NANT	0	0.52	AA12
071	2lbj-m7_A_C9_C10	NAN	NANT	0	0.59	AA12
072	2lbj-m8_A_C9_C10	NAN	NANT	0	0.52	AA12
073	2lbj-m1_A_C10_A11	NAN	NANT	0	1.59	BB14
074	2lbj-m2_A_C10_A11	NAN	NANT	0	1.57	BB14
075	2lbj-m3_A_C10_A11	NAN	NANT	0	1.56	BB14
076	2lbj-m4_A_C10_A11	NAN	NANT	0	1.60	BB14
077	2lbj-m5_A_C10_A11	NAN	NANT	0	1.60	BB14
078	2lbj-m6_A_C10_A11	NAN	NANT	0	1.57	BB14
079	2lbj-m7_A_C10_A11	NAN	NANT	0	1.61	BB14
080	2lbj-m8_A_C10_A11	NAN	NANT	0	1.58	BB14
081	2lbj-m1_A_A11_A12	AAA	AA00	28	0.33	AA00
082	2lbj-m2_A_A11_A12	AAA	AA08	40	0.44	AA08
083	2lbj-m3_A_A11_A12	AAA	AA00	23	0.36	AA00
084	2lbj-m4_A_A11_A12	AAA	AA00	19	0.37	AA00
085	2lbj-m5_A_A11_A12	AAA	AA00	19	0.37	AA00
086	2lbj-m6_A_A11_A12	AAA	AA00	19	0.35	AA00
087	2lbj-m7_A_A11_A12	AAA	AA00	27	0.39	AA00
088	2lbj-m8_A_A11_A12	AAA	AA00	28	0.36	AA00
089	2lbj-m1_A_A12_G13	AAA	AA00	48	0.33	AA00
090	2lbj-m2_A_A12_G13	AAA	AA00	53	0.26	AA00
091	2lbj-m3_A_A12_G13	AAA	AA00	57	0.26	AA00
092	2lbj-m4_A_A12_G13	AAA	AA00	54	0.32	AA00
093	2lbj-m5_A_A12_G13	AAA	AA00	57	0.33	AA00
094	2lbj-m6_A_A12_G13	AAA	AA00	56	0.28	AA00
095	2lbj-m7_A_A12_G13	AAA	AA00	49	0.34	AA00
096	2lbj-m8_A_A12_G13	AAA	AA00	58	0.27	AA00
097	2lbj-m1_A_G13_G14	AAA	AA00	74	0.22	AA00
098	2lbj-m2_A_G13_G14	AAA	AA00	41	0.31	AA00
099	2lbj-m3_A_G13_G14	AAA	AA00	53	0.29	AA00
100	2lbj-m4_A_G13_G14	AAA	AA00	59	0.25	AA00
101	2lbj-m5_A_G13_G14	AAA	AA00	46	0.29	AA00
102	2lbj-m6_A_G13_G14	AAA	AA00	46	0.36	AA00
103	2lbj-m7_A_G13_G14	AAA	AA00	70	0.24	AA00
104	2lbj-m8_A_G13_G14	AAA	AA00	50	0.34	AA00
105	2lbj-m1_A_G14_U15	AAA	AA00	31	0.37	AA00
106	2lbj-m2_A_G14_U15	AAA	AA08	45	0.42	AA08
107	2lbj-m3_A_G14_U15	AAA	AA08	43	0.43	AA08
108	2lbj-m4_A_G14_U15	AAA	AA08	54	0.41	AA08
109	2lbj-m5_A_G14_U15	AAA	AA00	34	0.33	AA00
110	2lbj-m6_A_G14_U15	AAu	AA12	30	0.26	AA12
111	2lbj-m7_A_G14_U15	AAA	AA00	32	0.38	AA00
112	2lbj-m8_A_G14_U15	AAu	AA12	31	0.27	AA12
113	2lbj-m1_A_U15_C16	AAA	AA08	23	0.43	AA08
114	2lbj-m2_A_U15_C16	AAA	AA00	15	0.46	AA00
115	2lbj-m3_A_U15_C16	AAu	AA12	24	0.28	AA12
116	2lbj-m4_A_U15_C16	AAu	AA12	27	0.30	AA12
117	2lbj-m5_A_U15_C16	AAA	AA00	34	0.29	AA00
118	2lbj-m6_A_U15_C16	AAA	AA04	21	0.66	AA04
119	2lbj-m7_A_U15_C16	AAA	AA00	24	0.36	AA00
120	2lbj-m8_A_U15_C16	AAA	AA08	19	0.54	AA08
121	2lbj-m1_A_C16_C17	AAA	AA04	66	0.33	AA04
122	2lbj-m2_A_C16_C17	AAA	AA00	26	0.31	AA00
123	2lbj-m3_A_C16_C17	AAA	AA00	31	0.27	AA00
124	2lbj-m4_A_C16_C17	AAA	AA04	69	0.33	AA04
125	2lbj-m5_A_C16_C17	AAA	AA00	29	0.34	AA00
126	2lbj-m6_A_C16_C17	AAA	AA00	26	0.38	AA00
127	2lbj-m7_A_C16_C17	AAA	AA04	70	0.31	AA04
128	2lbj-m8_A_C16_C17	AAA	AA00	37	0.37	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 128 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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