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Conformers: ABBIImiBZICOPNSYNN
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Chemical probe bound to HIV TAR RNA

Results of the assignment of 280 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012l8h-m10_A_G17_G18AAAAA00850.19 AA00
0022l8h-m1_A_G17_G18AAAAA00860.19 AA00
0032l8h-m2_A_G17_G18AAAAA00860.20 AA00
0042l8h-m3_A_G17_G18AAAAA00850.20 AA00
0052l8h-m4_A_G17_G18AAAAA00850.19 AA00
0062l8h-m5_A_G17_G18AAAAA00850.19 AA00
0072l8h-m6_A_G17_G18AAAAA00850.19 AA00
0082l8h-m7_A_G17_G18AAAAA00860.20 AA00
0092l8h-m8_A_G17_G18AAAAA00850.19 AA00
0102l8h-m9_A_G17_G18AAAAA00860.19 AA00
0112l8h-m10_A_G18_C19AAAAA00940.18 AA00
0122l8h-m1_A_G18_C19AAAAA00940.18 AA00
0132l8h-m2_A_G18_C19AAAAA00940.19 AA00
0142l8h-m3_A_G18_C19AAAAA00940.18 AA00
0152l8h-m4_A_G18_C19AAAAA00940.18 AA00
0162l8h-m5_A_G18_C19AAAAA00930.18 AA00
0172l8h-m6_A_G18_C19AAAAA00950.19 AA00
0182l8h-m7_A_G18_C19AAAAA00940.19 AA00
0192l8h-m8_A_G18_C19AAAAA00940.19 AA00
0202l8h-m9_A_G18_C19AAAAA00940.18 AA00
0212l8h-m10_A_C19_A20AAAAA00900.21 AA00
0222l8h-m1_A_C19_A20AAAAA00910.21 AA00
0232l8h-m2_A_C19_A20AAAAA00910.22 AA00
0242l8h-m3_A_C19_A20AAAAA00910.21 AA00
0252l8h-m4_A_C19_A20AAAAA00910.23 AA00
0262l8h-m5_A_C19_A20AAAAA00910.20 AA00
0272l8h-m6_A_C19_A20AAAAA00910.22 AA00
0282l8h-m7_A_C19_A20AAAAA00900.22 AA00
0292l8h-m8_A_C19_A20AAAAA00910.21 AA00
0302l8h-m9_A_C19_A20AAAAA00910.21 AA00
0312l8h-m10_A_A20_G21AAAAA00860.21 AA00
0322l8h-m1_A_A20_G21AAAAA00890.21 AA00
0332l8h-m2_A_A20_G21AAAAA00860.21 AA00
0342l8h-m3_A_A20_G21AAAAA00860.21 AA00
0352l8h-m4_A_A20_G21AAAAA00890.22 AA00
0362l8h-m5_A_A20_G21AAAAA00850.21 AA00
0372l8h-m6_A_A20_G21AAAAA00860.21 AA00
0382l8h-m7_A_A20_G21AAAAA00860.22 AA00
0392l8h-m8_A_A20_G21AAAAA00860.22 AA00
0402l8h-m9_A_A20_G21AAAAA00850.22 AA00
0412l8h-m10_A_G21_A22AAAAA02260.27 AA02
0422l8h-m1_A_G21_A22AAAAA02220.32 AA02
0432l8h-m2_A_G21_A22AAAAA02310.31 AA02
0442l8h-m3_A_G21_A22AAAAA02300.33 AA02
0452l8h-m4_A_G21_A22AAAAA02210.31 AA02
0462l8h-m5_A_G21_A22AAAAA02300.34 AA02
0472l8h-m6_A_G21_A22AAAAA02310.32 AA02
0482l8h-m7_A_G21_A22AAAAA02270.28 AA02
0492l8h-m8_A_G21_A22AAAAA02280.26 AA02
0502l8h-m9_A_G21_A22AAAAA02290.26 AA02
0512l8h-m10_A_A22_U23NANNANT00.53 AB04
0522l8h-m1_A_A22_U23NANNANT00.53 AB04
0532l8h-m2_A_A22_U23NANNANT00.54 AB04
0542l8h-m3_A_A22_U23NANNANT00.57 AB04
0552l8h-m4_A_A22_U23NANNANT00.56 AB04
0562l8h-m5_A_A22_U23NANNANT00.54 AB04
0572l8h-m6_A_A22_U23NANNANT00.56 AB04
0582l8h-m7_A_A22_U23NANNANT00.49 AB04
0592l8h-m8_A_A22_U23NANNANT00.50 AB04
0602l8h-m9_A_A22_U23NANNANT00.50 AB04
0612l8h-m10_A_U23_C24OPNOP21430.40 OP21
0622l8h-m1_A_U23_C24OPNOP21410.43 OP21
0632l8h-m2_A_U23_C24OPNOP21440.43 OP21
0642l8h-m3_A_U23_C24OPNOP21420.41 OP21
0652l8h-m4_A_U23_C24NANNANT00.39 OP21
0662l8h-m5_A_U23_C24OPNOP21420.43 OP21
0672l8h-m6_A_U23_C24NANNANT00.38 OP21
0682l8h-m7_A_U23_C24OPNOP21420.44 OP21
0692l8h-m8_A_U23_C24OPNOP21440.42 OP21
0702l8h-m9_A_U23_C24NANNANT00.38 OP21
0712l8h-m10_A_C24_U25NANNANT00.55 OP21
0722l8h-m1_A_C24_U25NANNANT00.62 OP21
0732l8h-m2_A_C24_U25NANNANT00.64 OP21
0742l8h-m3_A_C24_U25NANNANT00.58 OP21
0752l8h-m4_A_C24_U25OPNOP21570.49 OP21
0762l8h-m5_A_C24_U25NANNANT00.61 OP21
0772l8h-m6_A_C24_U25OPNOP21560.49 OP21
0782l8h-m7_A_C24_U25NANNANT00.63 OP21
0792l8h-m8_A_C24_U25NANNANT00.64 OP21
0802l8h-m9_A_C24_U25OPNOP21470.52 OP21
0812l8h-m10_A_U25_G26NANNANT00.50 BA08
0822l8h-m1_A_U25_G26NANNANT00.47 BA08
0832l8h-m2_A_U25_G26NANNANT00.47 BA08
0842l8h-m3_A_U25_G26NANNANT00.50 BA08
0852l8h-m4_A_U25_G26NANNANT00.49 BA08
0862l8h-m5_A_U25_G26NANNANT00.51 BA08
0872l8h-m6_A_U25_G26NANNANT00.47 BA08
0882l8h-m7_A_U25_G26NANNANT00.51 BA08
0892l8h-m8_A_U25_G26NANNANT00.48 BA08
0902l8h-m9_A_U25_G26NANNANT00.48 BA08
0912l8h-m10_A_G26_A27AAAAA00940.27 AA00
0922l8h-m1_A_G26_A27AAAAA00920.27 AA00
0932l8h-m2_A_G26_A27AAAAA00920.28 AA00
0942l8h-m3_A_G26_A27AAAAA00920.26 AA00
0952l8h-m4_A_G26_A27AAAAA00900.27 AA00
0962l8h-m5_A_G26_A27AAAAA00900.29 AA00
0972l8h-m6_A_G26_A27AAAAA00920.27 AA00
0982l8h-m7_A_G26_A27AAAAA00930.28 AA00
0992l8h-m8_A_G26_A27AAAAA00930.27 AA00
1002l8h-m9_A_G26_A27AAAAA00920.28 AA00
1012l8h-m10_A_A27_G28AAAAA00930.23 AA00
1022l8h-m1_A_A27_G28AAAAA00910.24 AA00
1032l8h-m2_A_A27_G28AAAAA00910.24 AA00
1042l8h-m3_A_A27_G28AAAAA00890.24 AA00
1052l8h-m4_A_A27_G28AAAAA00900.23 AA00
1062l8h-m5_A_A27_G28AAAAA00850.26 AA00
1072l8h-m6_A_A27_G28AAAAA00900.24 AA00
1082l8h-m7_A_A27_G28AAAAA00910.24 AA00
1092l8h-m8_A_A27_G28AAAAA00910.24 AA00
1102l8h-m9_A_A27_G28AAAAA00910.23 AA00
1112l8h-m10_A_G28_C29AAAAA09270.40 AA09
1122l8h-m1_A_G28_C29AAAAA09270.41 AA09
1132l8h-m2_A_G28_C29AAAAA09210.41 AA09
1142l8h-m3_A_G28_C29AAAAA00170.29 AA00
1152l8h-m4_A_G28_C29AAAAA00160.28 AA00
1162l8h-m5_A_G28_C29AAAAA00490.28 AA00
1172l8h-m6_A_G28_C29AAAAA00150.28 AA00
1182l8h-m7_A_G28_C29AAAAA09250.41 AA09
1192l8h-m8_A_G28_C29AAAAA00190.29 AA00
1202l8h-m9_A_G28_C29AAAAA00250.29 AA00
1212l8h-m10_A_C29_C30AAAAA02410.29 AA02
1222l8h-m1_A_C29_C30AAAAA02340.24 AA02
1232l8h-m2_A_C29_C30AAAAA02320.22 AA02
1242l8h-m3_A_C29_C30AAAAA02360.35 AA02
1252l8h-m4_A_C29_C30AAAAA02490.23 AA02
1262l8h-m5_A_C29_C30AAAAA02190.42 AA02
1272l8h-m6_A_C29_C30AAAAA02440.31 AA02
1282l8h-m7_A_C29_C30AAAAA02310.22 AA02
1292l8h-m8_A_C29_C30AAAAA02330.35 AA02
1302l8h-m9_A_C29_C30AAAAA02390.23 AA02
1312l8h-m10_A_C30_U31NANNANT00.68 BB00
1322l8h-m1_A_C30_U31NANNANT00.62 BB01
1332l8h-m2_A_C30_U31NANNANT00.54 AA02
1342l8h-m3_A_C30_U31AAAAA02260.47 AA02
1352l8h-m4_A_C30_U31NANNANT00.67 BB00
1362l8h-m5_A_C30_U31AAAAA02280.48 AA02
1372l8h-m6_A_C30_U31AAAAA02240.50 AA02
1382l8h-m7_A_C30_U31NANNANT00.56 AA02
1392l8h-m8_A_C30_U31AAAAA02260.48 AA02
1402l8h-m9_A_C30_U31NANNANT00.63 BB01
1412l8h-m10_A_U31_G32NANNANT01.12 OP09
1422l8h-m1_A_U31_G32NANNANT00.97 OP29
1432l8h-m2_A_U31_G32NANNANT00.97 OP09
1442l8h-m3_A_U31_G32NANNANT01.04 OP09
1452l8h-m4_A_U31_G32NANNANT01.28 OP09
1462l8h-m5_A_U31_G32NANNANT01.20 OP09
1472l8h-m6_A_U31_G32NANNANT01.15 OP09
1482l8h-m7_A_U31_G32NANNANT00.99 OP09
1492l8h-m8_A_U31_G32NANNANT01.05 OP09
1502l8h-m9_A_U31_G32NANNANT01.22 OP09
1512l8h-m10_A_G32_G33BBBBB00290.72 BB00
1522l8h-m1_A_G32_G33NANNANT00.60 AA00
1532l8h-m2_A_G32_G33BBBBB00750.55 BB00
1542l8h-m3_A_G32_G33BBBBB00760.57 BB00
1552l8h-m4_A_G32_G33NANNANT00.87 BB00
1562l8h-m5_A_G32_G33BBBBB00200.79 BB00
1572l8h-m6_A_G32_G33BBBBB00230.79 BB00
1582l8h-m7_A_G32_G33BBBBB00770.57 BB00
1592l8h-m8_A_G32_G33BBBBB00650.65 BB00
1602l8h-m9_A_G32_G33BBBBB00120.83 BB00
1612l8h-m10_A_G33_G34NANNANT00.88 BB00
1622l8h-m1_A_G33_G34NANNANT00.55 BB16
1632l8h-m2_A_G33_G34NANNANT00.85 BB00
1642l8h-m3_A_G33_G34NANNANT01.11 BB00
1652l8h-m4_A_G33_G34NANNANT00.85 BB00
1662l8h-m5_A_G33_G34NANNANT00.87 BB00
1672l8h-m6_A_G33_G34NANNANT00.85 BB00
1682l8h-m7_A_G33_G34NANNANT00.91 BB00
1692l8h-m8_A_G33_G34NANNANT00.88 BB00
1702l8h-m9_A_G33_G34NANNANT00.84 BB00
1712l8h-m10_A_G34_A35NANNANT00.66 BB00
1722l8h-m1_A_G34_A35NANNANT00.67 BB00
1732l8h-m2_A_G34_A35NANNANT00.66 BB00
1742l8h-m3_A_G34_A35NANNANT00.76 BB00
1752l8h-m4_A_G34_A35NANNANT00.71 BB00
1762l8h-m5_A_G34_A35NANNANT00.71 BB00
1772l8h-m6_A_G34_A35NANNANT00.68 BB00
1782l8h-m7_A_G34_A35NANNANT00.67 BB00
1792l8h-m8_A_G34_A35NANNANT00.77 BB01
1802l8h-m9_A_G34_A35NANNANT00.68 BB00
1812l8h-m10_A_A35_G36NANNANT00.66 AA02
1822l8h-m1_A_A35_G36NANNANT00.62 BA08
1832l8h-m2_A_A35_G36NANNANT00.64 AA02
1842l8h-m3_A_A35_G36NANNANT00.48 AA12
1852l8h-m4_A_A35_G36NANNANT00.53 AA12
1862l8h-m5_A_A35_G36NANNANT00.54 AA12
1872l8h-m6_A_A35_G36NANNANT00.47 AA12
1882l8h-m7_A_A35_G36NANNANT00.70 AA02
1892l8h-m8_A_A35_G36NANNANT00.47 AA12
1902l8h-m9_A_A35_G36NANNANT00.67 AA02
1912l8h-m10_A_G36_C37AAAAA00810.25 AA00
1922l8h-m1_A_G36_C37AAAAA00850.24 AA00
1932l8h-m2_A_G36_C37AAAAA00850.24 AA00
1942l8h-m3_A_G36_C37AAAAA00850.26 AA00
1952l8h-m4_A_G36_C37AAAAA00820.26 AA00
1962l8h-m5_A_G36_C37AAAAA00840.27 AA00
1972l8h-m6_A_G36_C37AAAAA00860.25 AA00
1982l8h-m7_A_G36_C37AAAAA00830.25 AA00
1992l8h-m8_A_G36_C37AAAAA00890.25 AA00
2002l8h-m9_A_G36_C37AAAAA00870.25 AA00
2012l8h-m10_A_C37_U38AAAAA00920.24 AA00
2022l8h-m1_A_C37_U38AAAAA00920.23 AA00
2032l8h-m2_A_C37_U38AAAAA00930.23 AA00
2042l8h-m3_A_C37_U38AAAAA00920.25 AA00
2052l8h-m4_A_C37_U38AAAAA00900.24 AA00
2062l8h-m5_A_C37_U38AAAAA00930.25 AA00
2072l8h-m6_A_C37_U38AAAAA00920.24 AA00
2082l8h-m7_A_C37_U38AAAAA00950.24 AA00
2092l8h-m8_A_C37_U38AAAAA00950.24 AA00
2102l8h-m9_A_C37_U38AAAAA00950.24 AA00
2112l8h-m10_A_U38_C39AAAAA00970.25 AA00
2122l8h-m1_A_U38_C39AAAAA00970.26 AA00
2132l8h-m2_A_U38_C39AAAAA00960.26 AA00
2142l8h-m3_A_U38_C39AAAAA00960.26 AA00
2152l8h-m4_A_U38_C39AAAAA00970.26 AA00
2162l8h-m5_A_U38_C39AAAAA00950.27 AA00
2172l8h-m6_A_U38_C39AAAAA00960.25 AA00
2182l8h-m7_A_U38_C39AAAAA00960.28 AA00
2192l8h-m8_A_U38_C39AAAAA00960.25 AA00
2202l8h-m9_A_U38_C39AAAAA00960.27 AA00
2212l8h-m10_A_C39_U40AAAAA09470.32 AA09
2222l8h-m1_A_C39_U40AAAAA00450.37 AA00
2232l8h-m2_A_C39_U40AAAAA09500.34 AA09
2242l8h-m3_A_C39_U40AAAAA00540.36 AA00
2252l8h-m4_A_C39_U40AAAAA00410.38 AA00
2262l8h-m5_A_C39_U40AAAAA00470.37 AA00
2272l8h-m6_A_C39_U40AAAAA09510.34 AA09
2282l8h-m7_A_C39_U40AAAAA09520.34 AA09
2292l8h-m8_A_C39_U40AAAAA09510.32 AA09
2302l8h-m9_A_C39_U40AAAAA09470.33 AA09
2312l8h-m10_A_U40_C41AAAAA08100.28 AA08
2322l8h-m1_A_U40_C41AAAAA00720.25 AA00
2332l8h-m2_A_U40_C41AAAAA08140.25 AA08
2342l8h-m3_A_U40_C41AAAAA00810.24 AA00
2352l8h-m4_A_U40_C41AAAAA00720.25 AA00
2362l8h-m5_A_U40_C41AAAAA00860.21 AA00
2372l8h-m6_A_U40_C41AAAAA08140.25 AA08
2382l8h-m7_A_U40_C41AAAAA08130.26 AA08
2392l8h-m8_A_U40_C41AAAAA08110.27 AA08
2402l8h-m9_A_U40_C41AAAAA08110.27 AA08
2412l8h-m10_A_C41_U42AAAAA00840.24 AA00
2422l8h-m1_A_C41_U42AAAAA00870.25 AA00
2432l8h-m2_A_C41_U42AAAAA00860.24 AA00
2442l8h-m3_A_C41_U42AAAAA00870.25 AA00
2452l8h-m4_A_C41_U42AAAAA00870.25 AA00
2462l8h-m5_A_C41_U42AAAAA00870.24 AA00
2472l8h-m6_A_C41_U42AAAAA00850.24 AA00
2482l8h-m7_A_C41_U42AAAAA00870.24 AA00
2492l8h-m8_A_C41_U42AAAAA00830.23 AA00
2502l8h-m9_A_C41_U42AAAAA00830.24 AA00
2512l8h-m10_A_U42_G43AAAAA00890.25 AA00
2522l8h-m1_A_U42_G43AAAAA00870.26 AA00
2532l8h-m2_A_U42_G43AAAAA00890.25 AA00
2542l8h-m3_A_U42_G43AAAAA00880.26 AA00
2552l8h-m4_A_U42_G43AAAAA00890.26 AA00
2562l8h-m5_A_U42_G43AAAAA00850.26 AA00
2572l8h-m6_A_U42_G43AAAAA00890.25 AA00
2582l8h-m7_A_U42_G43AAAAA00890.25 AA00
2592l8h-m8_A_U42_G43AAAAA00900.25 AA00
2602l8h-m9_A_U42_G43AAAAA00890.24 AA00
2612l8h-m10_A_G43_C44AAAAA00950.25 AA00
2622l8h-m1_A_G43_C44AAAAA00960.25 AA00
2632l8h-m2_A_G43_C44AAAAA00960.26 AA00
2642l8h-m3_A_G43_C44AAAAA00950.25 AA00
2652l8h-m4_A_G43_C44AAAAA00960.25 AA00
2662l8h-m5_A_G43_C44AAAAA00960.25 AA00
2672l8h-m6_A_G43_C44AAAAA00960.25 AA00
2682l8h-m7_A_G43_C44AAAAA00960.25 AA00
2692l8h-m8_A_G43_C44AAAAA00950.25 AA00
2702l8h-m9_A_G43_C44AAAAA00950.25 AA00
2712l8h-m10_A_C44_C45AAAAA00880.28 AA00
2722l8h-m1_A_C44_C45AAAAA00900.29 AA00
2732l8h-m2_A_C44_C45AAAAA00870.29 AA00
2742l8h-m3_A_C44_C45AAAAA00890.28 AA00
2752l8h-m4_A_C44_C45AAAAA00890.28 AA00
2762l8h-m5_A_C44_C45AAAAA00900.28 AA00
2772l8h-m6_A_C44_C45AAAAA00890.29 AA00
2782l8h-m7_A_C44_C45AAAAA00870.29 AA00
2792l8h-m8_A_C44_C45AAAAA00870.29 AA00
2802l8h-m9_A_C44_C45AAAAA00880.28 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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