DNATCO v4.1: results

Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon

Results of the assignment of 200 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2l8f-m10_A_G1_U2	AAA	AA00	84	0.17	AA00
002	2l8f-m1_A_G1_U2	AAA	AA00	84	0.19	AA00
003	2l8f-m2_A_G1_U2	AAA	AA00	81	0.18	AA00
004	2l8f-m3_A_G1_U2	AAA	AA00	72	0.26	AA00
005	2l8f-m4_A_G1_U2	AAA	AA00	84	0.18	AA00
006	2l8f-m5_A_G1_U2	AAA	AA00	82	0.15	AA00
007	2l8f-m6_A_G1_U2	AAA	AA00	67	0.28	AA00
008	2l8f-m7_A_G1_U2	AAA	AA00	79	0.20	AA00
009	2l8f-m8_A_G1_U2	AAA	AA00	85	0.17	AA00
010	2l8f-m9_A_G1_U2	AAA	AA00	79	0.23	AA00
011	2l8f-m10_A_U2_G3	AAA	AA00	81	0.14	AA00
012	2l8f-m1_A_U2_G3	AAA	AA00	81	0.14	AA00
013	2l8f-m2_A_U2_G3	AAA	AA00	83	0.15	AA00
014	2l8f-m3_A_U2_G3	AAA	AA00	79	0.14	AA00
015	2l8f-m4_A_U2_G3	AAA	AA00	75	0.15	AA00
016	2l8f-m5_A_U2_G3	AAA	AA00	78	0.14	AA00
017	2l8f-m6_A_U2_G3	AAA	AA00	77	0.17	AA00
018	2l8f-m7_A_U2_G3	AAA	AA00	80	0.17	AA00
019	2l8f-m8_A_U2_G3	AAA	AA00	81	0.14	AA00
020	2l8f-m9_A_U2_G3	AAA	AA00	81	0.17	AA00
021	2l8f-m10_A_G3_A4	AAA	AA00	27	0.43	AA00
022	2l8f-m1_A_G3_A4	AAA	AA00	34	0.40	AA00
023	2l8f-m2_A_G3_A4	AAA	AA00	34	0.41	AA00
024	2l8f-m3_A_G3_A4	AAA	AA00	25	0.41	AA00
025	2l8f-m4_A_G3_A4	AAA	AA00	32	0.42	AA00
026	2l8f-m5_A_G3_A4	AAA	AA00	28	0.41	AA00
027	2l8f-m6_A_G3_A4	AAA	AA00	48	0.35	AA00
028	2l8f-m7_A_G3_A4	AAA	AA00	44	0.36	AA00
029	2l8f-m8_A_G3_A4	AAA	AA00	36	0.38	AA00
030	2l8f-m9_A_G3_A4	AAA	AA00	47	0.35	AA00
031	2l8f-m10_A_A4_A5	AAu	AA12	72	0.44	AA12
032	2l8f-m1_A_A4_A5	AAu	AA12	79	0.38	AA12
033	2l8f-m2_A_A4_A5	AAu	AA12	71	0.46	AA12
034	2l8f-m3_A_A4_A5	AAu	AA12	71	0.46	AA12
035	2l8f-m4_A_A4_A5	AAu	AA12	68	0.46	AA12
036	2l8f-m5_A_A4_A5	AAu	AA12	65	0.49	AA12
037	2l8f-m6_A_A4_A5	AAu	AA12	74	0.45	AA12
038	2l8f-m7_A_A4_A5	AAu	AA12	74	0.46	AA12
039	2l8f-m8_A_A4_A5	AAu	AA12	69	0.48	AA12
040	2l8f-m9_A_A4_A5	AAu	AA12	67	0.48	AA12
041	2l8f-m10_A_A5_G6	AAA	AA00	64	0.28	AA00
042	2l8f-m1_A_A5_G6	AAA	AA00	66	0.29	AA00
043	2l8f-m2_A_A5_G6	AAA	AA00	72	0.25	AA00
044	2l8f-m3_A_A5_G6	AAA	AA00	71	0.26	AA00
045	2l8f-m4_A_A5_G6	AAA	AA00	72	0.25	AA00
046	2l8f-m5_A_A5_G6	AAA	AA00	65	0.28	AA00
047	2l8f-m6_A_A5_G6	AAA	AA00	69	0.29	AA00
048	2l8f-m7_A_A5_G6	AAA	AA00	68	0.28	AA00
049	2l8f-m8_A_A5_G6	AAA	AA00	71	0.26	AA00
050	2l8f-m9_A_A5_G6	AAA	AA00	74	0.26	AA00
051	2l8f-m10_A_G6_C7	AAA	AA08	21	0.49	AA08
052	2l8f-m1_A_G6_C7	AAA	AA00	12	0.57	AA00
053	2l8f-m2_A_G6_C7	AAA	AA08	11	0.53	AA08
054	2l8f-m3_A_G6_C7	AAA	AA08	18	0.50	AA08
055	2l8f-m4_A_G6_C7	AAA	AA00	14	0.55	AA00
056	2l8f-m5_A_G6_C7	AAA	AA08	20	0.55	AA08
057	2l8f-m6_A_G6_C7	AAA	AA04	32	0.64	AA04
058	2l8f-m7_A_G6_C7	AAA	AA08	11	0.54	AA08
059	2l8f-m8_A_G6_C7	AAA	AA08	11	0.55	AA08
060	2l8f-m9_A_G6_C7	AAA	AA04	32	0.64	AA04
061	2l8f-m10_A_C7_C8	AAA	AA00	82	0.20	AA00
062	2l8f-m1_A_C7_C8	AAA	AA00	77	0.24	AA00
063	2l8f-m2_A_C7_C8	AAA	AA00	83	0.21	AA00
064	2l8f-m3_A_C7_C8	AAA	AA00	80	0.22	AA00
065	2l8f-m4_A_C7_C8	AAA	AA00	83	0.23	AA00
066	2l8f-m5_A_C7_C8	AAA	AA00	78	0.20	AA00
067	2l8f-m6_A_C7_C8	AAA	AA00	75	0.27	AA00
068	2l8f-m7_A_C7_C8	AAA	AA00	84	0.21	AA00
069	2l8f-m8_A_C7_C8	AAA	AA00	82	0.21	AA00
070	2l8f-m9_A_C7_C8	AAA	AA00	79	0.25	AA00
071	2l8f-m10_A_C8_C9	AAA	AA00	79	0.18	AA00
072	2l8f-m1_A_C8_C9	AAA	AA00	75	0.21	AA00
073	2l8f-m2_A_C8_C9	AAA	AA00	74	0.23	AA00
074	2l8f-m3_A_C8_C9	AAA	AA00	85	0.18	AA00
075	2l8f-m4_A_C8_C9	AAA	AA00	80	0.20	AA00
076	2l8f-m5_A_C8_C9	AAA	AA00	82	0.19	AA00
077	2l8f-m6_A_C8_C9	AAA	AA00	78	0.21	AA00
078	2l8f-m7_A_C8_C9	AAA	AA00	80	0.21	AA00
079	2l8f-m8_A_C8_C9	AAA	AA00	83	0.19	AA00
080	2l8f-m9_A_C8_C9	AAA	AA00	75	0.24	AA00
081	2l8f-m10_A_C9_G10	AAA	AA00	80	0.14	AA00
082	2l8f-m1_A_C9_G10	AAA	AA00	84	0.14	AA00
083	2l8f-m2_A_C9_G10	AAA	AA00	85	0.14	AA00
084	2l8f-m3_A_C9_G10	AAA	AA00	82	0.16	AA00
085	2l8f-m4_A_C9_G10	AAA	AA00	87	0.13	AA00
086	2l8f-m5_A_C9_G10	AAA	AA00	83	0.13	AA00
087	2l8f-m6_A_C9_G10	AAA	AA00	85	0.13	AA00
088	2l8f-m7_A_C9_G10	AAA	AA00	87	0.14	AA00
089	2l8f-m8_A_C9_G10	AAA	AA00	83	0.12	AA00
090	2l8f-m9_A_C9_G10	AAA	AA00	79	0.18	AA00
091	2l8f-m10_A_G10_U11	AAA	AA00	76	0.28	AA00
092	2l8f-m1_A_G10_U11	AAA	AA00	77	0.25	AA00
093	2l8f-m2_A_G10_U11	AAA	AA00	77	0.27	AA00
094	2l8f-m3_A_G10_U11	AAA	AA00	83	0.22	AA00
095	2l8f-m4_A_G10_U11	AAA	AA00	75	0.26	AA00
096	2l8f-m5_A_G10_U11	AAA	AA00	80	0.26	AA00
097	2l8f-m6_A_G10_U11	AAA	AA00	79	0.24	AA00
098	2l8f-m7_A_G10_U11	AAA	AA00	65	0.33	AA00
099	2l8f-m8_A_G10_U11	AAA	AA00	74	0.28	AA00
100	2l8f-m9_A_G10_U11	AAA	AA00	80	0.23	AA00
101	2l8f-m10_B_C12_G13	AAA	AA00	78	0.17	AA00
102	2l8f-m1_B_C12_G13	AAA	AA00	77	0.17	AA00
103	2l8f-m2_B_C12_G13	AAA	AA00	80	0.16	AA00
104	2l8f-m3_B_C12_G13	AAA	AA00	82	0.15	AA00
105	2l8f-m4_B_C12_G13	AAA	AA00	80	0.15	AA00
106	2l8f-m5_B_C12_G13	AAA	AA00	78	0.15	AA00
107	2l8f-m6_B_C12_G13	AAA	AA00	77	0.16	AA00
108	2l8f-m7_B_C12_G13	AAA	AA00	83	0.14	AA00
109	2l8f-m8_B_C12_G13	AAA	AA00	82	0.14	AA00
110	2l8f-m9_B_C12_G13	AAA	AA00	77	0.16	AA00
111	2l8f-m10_B_G13_G14	AAA	AA00	82	0.16	AA00
112	2l8f-m1_B_G13_G14	AAA	AA00	82	0.17	AA00
113	2l8f-m2_B_G13_G14	AAA	AA00	81	0.17	AA00
114	2l8f-m3_B_G13_G14	AAA	AA00	80	0.17	AA00
115	2l8f-m4_B_G13_G14	AAA	AA00	81	0.17	AA00
116	2l8f-m5_B_G13_G14	AAA	AA00	79	0.18	AA00
117	2l8f-m6_B_G13_G14	AAA	AA00	77	0.17	AA00
118	2l8f-m7_B_G13_G14	AAA	AA00	79	0.16	AA00
119	2l8f-m8_B_G13_G14	AAA	AA00	78	0.16	AA00
120	2l8f-m9_B_G13_G14	AAA	AA00	77	0.17	AA00
121	2l8f-m10_B_G14_A15	AAA	AA00	75	0.25	AA00
122	2l8f-m1_B_G14_A15	AAA	AA00	76	0.25	AA00
123	2l8f-m2_B_G14_A15	AAA	AA00	70	0.28	AA00
124	2l8f-m3_B_G14_A15	AAA	AA00	72	0.28	AA00
125	2l8f-m4_B_G14_A15	AAA	AA00	71	0.27	AA00
126	2l8f-m5_B_G14_A15	AAA	AA00	73	0.28	AA00
127	2l8f-m6_B_G14_A15	AAA	AA00	71	0.28	AA00
128	2l8f-m7_B_G14_A15	AAA	AA00	68	0.29	AA00
129	2l8f-m8_B_G14_A15	AAA	AA00	64	0.30	AA00
130	2l8f-m9_B_G14_A15	AAA	AA00	66	0.29	AA00
131	2l8f-m10_B_A15_G16	AAA	AA00	43	0.32	AA00
132	2l8f-m1_B_A15_G16	AAA	AA00	33	0.25	AA00
133	2l8f-m2_B_A15_G16	AAA	AA00	67	0.25	AA00
134	2l8f-m3_B_A15_G16	AAA	AA00	64	0.28	AA00
135	2l8f-m4_B_A15_G16	AAA	AA00	62	0.30	AA00
136	2l8f-m5_B_A15_G16	AAA	AA00	58	0.28	AA00
137	2l8f-m6_B_A15_G16	AAA	AA00	50	0.27	AA00
138	2l8f-m7_B_A15_G16	AAA	AA00	57	0.28	AA00
139	2l8f-m8_B_A15_G16	AAA	AA00	61	0.25	AA00
140	2l8f-m9_B_A15_G16	AAA	AA00	67	0.25	AA00
141	2l8f-m10_B_G16_G17	NAN	NANT	0	0.50	AB04
142	2l8f-m1_B_G16_G17	NAN	NANT	0	0.79	AB02
143	2l8f-m2_B_G16_G17	NAN	NANT	0	0.47	AB04
144	2l8f-m3_B_G16_G17	NAN	NANT	0	0.48	AB04
145	2l8f-m4_B_G16_G17	NAN	NANT	0	0.48	AB04
146	2l8f-m5_B_G16_G17	NAN	NANT	0	0.46	AB04
147	2l8f-m6_B_G16_G17	A-B	AB01	45	0.39	AB01
148	2l8f-m7_B_G16_G17	A-B	AB01	42	0.39	AB01
149	2l8f-m8_B_G16_G17	NAN	NANT	0	0.47	AB04
150	2l8f-m9_B_G16_G17	A-B	AB01	41	0.39	AB01
151	2l8f-m10_B_G17_A18	NAN	NANT	0	1.26	OP24
152	2l8f-m1_B_G17_A18	NAN	NANT	0	1.02	BA16
153	2l8f-m2_B_G17_A18	NAN	NANT	0	1.31	OP24
154	2l8f-m3_B_G17_A18	NAN	NANT	0	1.28	OP24
155	2l8f-m4_B_G17_A18	NAN	NANT	0	1.31	OP24
156	2l8f-m5_B_G17_A18	NAN	NANT	0	1.27	OP24
157	2l8f-m6_B_G17_A18	OPN	OP15	60	0.43	OP15
158	2l8f-m7_B_G17_A18	OPN	OP15	62	0.44	OP15
159	2l8f-m8_B_G17_A18	NAN	NANT	0	1.30	OP24
160	2l8f-m9_B_G17_A18	OPN	OP15	54	0.45	OP15
161	2l8f-m10_B_A18_C19	AAA	AA08	13	0.59	AA08
162	2l8f-m1_B_A18_C19	AAA	AA08	21	0.58	AA08
163	2l8f-m2_B_A18_C19	AAA	AA08	12	0.61	AA08
164	2l8f-m3_B_A18_C19	AAA	AA08	13	0.58	AA08
165	2l8f-m4_B_A18_C19	AAA	AA08	13	0.60	AA08
166	2l8f-m5_B_A18_C19	AAA	AA08	12	0.61	AA08
167	2l8f-m6_B_A18_C19	AAA	AA08	11	0.55	AA08
168	2l8f-m7_B_A18_C19	AAA	AA04	33	0.66	AA04
169	2l8f-m8_B_A18_C19	AAA	AA08	13	0.60	AA08
170	2l8f-m9_B_A18_C19	AAA	AA04	37	0.65	AA04
171	2l8f-m10_B_C19_A20	AAA	AA00	84	0.14	AA00
172	2l8f-m1_B_C19_A20	AAA	AA00	87	0.14	AA00
173	2l8f-m2_B_C19_A20	AAA	AA00	86	0.13	AA00
174	2l8f-m3_B_C19_A20	AAA	AA00	84	0.15	AA00
175	2l8f-m4_B_C19_A20	AAA	AA00	80	0.15	AA00
176	2l8f-m5_B_C19_A20	AAA	AA00	86	0.13	AA00
177	2l8f-m6_B_C19_A20	AAA	AA00	81	0.15	AA00
178	2l8f-m7_B_C19_A20	AAA	AA00	79	0.17	AA00
179	2l8f-m8_B_C19_A20	AAA	AA00	86	0.14	AA00
180	2l8f-m9_B_C19_A20	AAA	AA00	83	0.16	AA00
181	2l8f-m10_B_A20_C21	AAA	AA00	76	0.17	AA00
182	2l8f-m1_B_A20_C21	AAA	AA00	81	0.15	AA00
183	2l8f-m2_B_A20_C21	AAA	AA00	79	0.17	AA00
184	2l8f-m3_B_A20_C21	AAA	AA00	71	0.18	AA00
185	2l8f-m4_B_A20_C21	AAA	AA00	76	0.17	AA00
186	2l8f-m5_B_A20_C21	AAA	AA00	77	0.16	AA00
187	2l8f-m6_B_A20_C21	AAA	AA00	83	0.19	AA00
188	2l8f-m7_B_A20_C21	AAA	AA00	84	0.14	AA00
189	2l8f-m8_B_A20_C21	AAA	AA00	80	0.16	AA00
190	2l8f-m9_B_A20_C21	AAA	AA00	84	0.15	AA00
191	2l8f-m10_B_C21_U22	AAA	AA00	75	0.29	AA00
192	2l8f-m1_B_C21_U22	AAA	AA00	78	0.27	AA00
193	2l8f-m2_B_C21_U22	AAA	AA00	74	0.29	AA00
194	2l8f-m3_B_C21_U22	A-B	AB05	70	0.28	AB05
195	2l8f-m4_B_C21_U22	AAA	AA00	72	0.30	AA00
196	2l8f-m5_B_C21_U22	AAA	AA00	71	0.27	AA00
197	2l8f-m6_B_C21_U22	A-B	AB05	67	0.25	AB05
198	2l8f-m7_B_C21_U22	AAA	AA00	80	0.24	AA00
199	2l8f-m8_B_C21_U22	AAA	AA00	76	0.27	AA00
200	2l8f-m9_B_C21_U22	AAA	AA00	76	0.29	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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B-A

B

IC

OPN

Z

N

Results of the assignment of 200 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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