DNATCO v4.1: results

The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2ky2-m10_A_G1_G2	AAA	AA00	84	0.21	AA00
002	2ky2-m1_A_G1_G2	AAA	AA00	83	0.21	AA00
003	2ky2-m2_A_G1_G2	AAA	AA00	76	0.24	AA00
004	2ky2-m3_A_G1_G2	AAA	AA00	79	0.23	AA00
005	2ky2-m4_A_G1_G2	AAA	AA00	79	0.24	AA00
006	2ky2-m5_A_G1_G2	AAA	AA00	78	0.23	AA00
007	2ky2-m6_A_G1_G2	AAA	AA00	80	0.22	AA00
008	2ky2-m7_A_G1_G2	AAA	AA00	82	0.20	AA00
009	2ky2-m8_A_G1_G2	AAA	AA00	80	0.22	AA00
010	2ky2-m9_A_G1_G2	AAA	AA00	80	0.22	AA00
011	2ky2-m10_A_G2_U3	AAA	AA00	75	0.31	AA00
012	2ky2-m1_A_G2_U3	AAA	AA00	71	0.31	AA00
013	2ky2-m2_A_G2_U3	AAA	AA00	71	0.31	AA00
014	2ky2-m3_A_G2_U3	AAA	AA00	76	0.30	AA00
015	2ky2-m4_A_G2_U3	AAA	AA00	72	0.31	AA00
016	2ky2-m5_A_G2_U3	AAA	AA00	71	0.29	AA00
017	2ky2-m6_A_G2_U3	AAA	AA00	72	0.30	AA00
018	2ky2-m7_A_G2_U3	AAA	AA00	74	0.32	AA00
019	2ky2-m8_A_G2_U3	AAA	AA00	67	0.33	AA00
020	2ky2-m9_A_G2_U3	AAA	AA00	70	0.32	AA00
021	2ky2-m10_A_U3_A4	AAA	AA00	58	0.34	AA00
022	2ky2-m1_A_U3_A4	AAA	AA00	47	0.40	AA00
023	2ky2-m2_A_U3_A4	AAA	AA00	46	0.38	AA00
024	2ky2-m3_A_U3_A4	AAA	AA00	37	0.47	AA00
025	2ky2-m4_A_U3_A4	AAA	AA00	48	0.36	AA00
026	2ky2-m5_A_U3_A4	AAA	AA00	46	0.38	AA00
027	2ky2-m6_A_U3_A4	AAu	AA12	66	0.22	AA12
028	2ky2-m7_A_U3_A4	AAA	AA00	41	0.39	AA00
029	2ky2-m8_A_U3_A4	AAA	AA00	41	0.37	AA00
030	2ky2-m9_A_U3_A4	AAA	AA00	53	0.35	AA00
031	2ky2-m10_A_A4_G5	AAw	AA01	78	0.22	AA01
032	2ky2-m1_A_A4_G5	AAw	AA01	70	0.29	AA01
033	2ky2-m2_A_A4_G5	AAw	AA01	88	0.23	AA01
034	2ky2-m3_A_A4_G5	AAA	AA00	78	0.17	AA00
035	2ky2-m4_A_A4_G5	AAw	AA01	77	0.20	AA01
036	2ky2-m5_A_A4_G5	AAA	AA00	67	0.19	AA00
037	2ky2-m6_A_A4_G5	AAA	AA00	79	0.14	AA00
038	2ky2-m7_A_A4_G5	AAw	AA01	85	0.20	AA01
039	2ky2-m8_A_A4_G5	AAw	AA01	63	0.31	AA01
040	2ky2-m9_A_A4_G5	AAw	AA01	91	0.19	AA01
041	2ky2-m10_A_G5_G6	AAw	AA01	65	0.30	AA01
042	2ky2-m1_A_G5_G6	AAw	AA01	31	0.43	AA01
043	2ky2-m2_A_G5_G6	AAA	AA00	60	0.31	AA00
044	2ky2-m3_A_G5_G6	AAA	AA00	75	0.26	AA00
045	2ky2-m4_A_G5_G6	AAw	AA01	66	0.30	AA01
046	2ky2-m5_A_G5_G6	AAA	AA00	59	0.36	AA00
047	2ky2-m6_A_G5_G6	AAw	AA01	64	0.36	AA01
048	2ky2-m7_A_G5_G6	AAw	AA01	44	0.38	AA01
049	2ky2-m8_A_G5_G6	AAw	AA01	19	0.46	AA01
050	2ky2-m9_A_G5_G6	AAw	AA01	50	0.35	AA01
051	2ky2-m10_A_G6_C7	AAA	AA00	78	0.28	AA00
052	2ky2-m1_A_G6_C7	AAA	AA00	71	0.30	AA00
053	2ky2-m2_A_G6_C7	AAA	AA00	83	0.22	AA00
054	2ky2-m3_A_G6_C7	AAA	AA00	83	0.21	AA00
055	2ky2-m4_A_G6_C7	AAA	AA00	79	0.28	AA00
056	2ky2-m5_A_G6_C7	AAA	AA00	79	0.24	AA00
057	2ky2-m6_A_G6_C7	AAA	AA00	52	0.37	AA00
058	2ky2-m7_A_G6_C7	AAA	AA00	68	0.31	AA00
059	2ky2-m8_A_G6_C7	AAA	AA00	63	0.33	AA00
060	2ky2-m9_A_G6_C7	AAA	AA00	72	0.31	AA00
061	2ky2-m10_A_C7_C8	AAA	AA00	85	0.17	AA00
062	2ky2-m1_A_C7_C8	AAA	AA00	87	0.17	AA00
063	2ky2-m2_A_C7_C8	AAA	AA00	85	0.19	AA00
064	2ky2-m3_A_C7_C8	AAA	AA00	81	0.19	AA00
065	2ky2-m4_A_C7_C8	AAA	AA00	87	0.16	AA00
066	2ky2-m5_A_C7_C8	AAA	AA00	73	0.24	AA00
067	2ky2-m6_A_C7_C8	AAA	AA00	78	0.23	AA00
068	2ky2-m7_A_C7_C8	AAA	AA00	82	0.21	AA00
069	2ky2-m8_A_C7_C8	AAA	AA00	87	0.18	AA00
070	2ky2-m9_A_C7_C8	AAA	AA00	84	0.19	AA00
071	2ky2-m10_A_C8_A9	AAA	AA00	78	0.29	AA00
072	2ky2-m1_A_C8_A9	AAA	AA00	70	0.29	AA00
073	2ky2-m2_A_C8_A9	AAA	AA00	82	0.17	AA00
074	2ky2-m3_A_C8_A9	AAA	AA00	85	0.18	AA00
075	2ky2-m4_A_C8_A9	AAA	AA00	69	0.30	AA00
076	2ky2-m5_A_C8_A9	AAA	AA00	87	0.15	AA00
077	2ky2-m6_A_C8_A9	AAA	AA00	86	0.16	AA00
078	2ky2-m7_A_C8_A9	AAA	AA00	81	0.17	AA00
079	2ky2-m8_A_C8_A9	AAA	AA00	79	0.27	AA00
080	2ky2-m9_A_C8_A9	AAA	AA00	85	0.20	AA00
081	2ky2-m10_B_G10_G11	AAA	AA00	79	0.24	AA00
082	2ky2-m1_B_G10_G11	AAA	AA00	80	0.21	AA00
083	2ky2-m2_B_G10_G11	AAA	AA00	85	0.20	AA00
084	2ky2-m3_B_G10_G11	AAA	AA00	84	0.20	AA00
085	2ky2-m4_B_G10_G11	AAA	AA00	82	0.21	AA00
086	2ky2-m5_B_G10_G11	AAA	AA00	82	0.21	AA00
087	2ky2-m6_B_G10_G11	AAA	AA00	84	0.19	AA00
088	2ky2-m7_B_G10_G11	AAA	AA00	84	0.19	AA00
089	2ky2-m8_B_G10_G11	AAA	AA00	77	0.24	AA00
090	2ky2-m9_B_G10_G11	AAA	AA00	80	0.21	AA00
091	2ky2-m10_B_G11_U12	AAA	AA00	74	0.30	AA00
092	2ky2-m1_B_G11_U12	AAA	AA00	71	0.30	AA00
093	2ky2-m2_B_G11_U12	AAA	AA00	72	0.32	AA00
094	2ky2-m3_B_G11_U12	AAA	AA00	69	0.33	AA00
095	2ky2-m4_B_G11_U12	AAA	AA00	76	0.29	AA00
096	2ky2-m5_B_G11_U12	AAA	AA00	70	0.34	AA00
097	2ky2-m6_B_G11_U12	AAA	AA00	73	0.31	AA00
098	2ky2-m7_B_G11_U12	AAA	AA00	73	0.31	AA00
099	2ky2-m8_B_G11_U12	AAA	AA00	64	0.34	AA00
100	2ky2-m9_B_G11_U12	AAA	AA00	70	0.31	AA00
101	2ky2-m10_B_U12_A13	AAA	AA00	39	0.43	AA00
102	2ky2-m1_B_U12_A13	AAA	AA00	37	0.42	AA00
103	2ky2-m2_B_U12_A13	AAA	AA00	56	0.34	AA00
104	2ky2-m3_B_U12_A13	AAA	AA00	49	0.41	AA00
105	2ky2-m4_B_U12_A13	AAA	AA00	40	0.46	AA00
106	2ky2-m5_B_U12_A13	AAA	AA00	37	0.42	AA00
107	2ky2-m6_B_U12_A13	AAA	AA00	36	0.43	AA00
108	2ky2-m7_B_U12_A13	AAA	AA00	28	0.44	AA00
109	2ky2-m8_B_U12_A13	AAw	AA01	34	0.51	AA01
110	2ky2-m9_B_U12_A13	AAA	AA00	37	0.42	AA00
111	2ky2-m10_B_A13_G14	AAw	AA01	88	0.25	AA01
112	2ky2-m1_B_A13_G14	AAw	AA01	83	0.26	AA01
113	2ky2-m2_B_A13_G14	AAw	AA01	82	0.21	AA01
114	2ky2-m3_B_A13_G14	AAw	AA01	83	0.24	AA01
115	2ky2-m4_B_A13_G14	AAA	AA00	76	0.15	AA00
116	2ky2-m5_B_A13_G14	AAw	AA01	93	0.21	AA01
117	2ky2-m6_B_A13_G14	AAA	AA00	82	0.15	AA00
118	2ky2-m7_B_A13_G14	AAw	AA01	87	0.25	AA01
119	2ky2-m8_B_A13_G14	AAA	AA00	84	0.13	AA00
120	2ky2-m9_B_A13_G14	AAw	AA01	89	0.24	AA01
121	2ky2-m10_B_G14_G15	AAA	AA00	56	0.35	AA00
122	2ky2-m1_B_G14_G15	AAA	AA00	40	0.40	AA00
123	2ky2-m2_B_G14_G15	AAw	AA01	66	0.29	AA01
124	2ky2-m3_B_G14_G15	AAA	AA00	51	0.41	AA00
125	2ky2-m4_B_G14_G15	AAA	AA00	74	0.25	AA00
126	2ky2-m5_B_G14_G15	AAw	AA01	46	0.37	AA01
127	2ky2-m6_B_G14_G15	AAw	AA01	62	0.35	AA01
128	2ky2-m7_B_G14_G15	AAw	AA01	44	0.37	AA01
129	2ky2-m8_B_G14_G15	AAA	AA00	61	0.29	AA00
130	2ky2-m9_B_G14_G15	AAw	AA01	44	0.39	AA01
131	2ky2-m10_B_G15_C16	AAA	AA00	80	0.24	AA00
132	2ky2-m1_B_G15_C16	AAA	AA00	84	0.21	AA00
133	2ky2-m2_B_G15_C16	AAA	AA00	62	0.34	AA00
134	2ky2-m3_B_G15_C16	AAA	AA00	82	0.22	AA00
135	2ky2-m4_B_G15_C16	AAA	AA00	85	0.22	AA00
136	2ky2-m5_B_G15_C16	AAA	AA00	58	0.34	AA00
137	2ky2-m6_B_G15_C16	AAA	AA00	75	0.29	AA00
138	2ky2-m7_B_G15_C16	AAA	AA00	58	0.35	AA00
139	2ky2-m8_B_G15_C16	AAA	AA00	84	0.22	AA00
140	2ky2-m9_B_G15_C16	AAA	AA00	33	0.41	AA00
141	2ky2-m10_B_C16_C17	AAA	AA00	80	0.20	AA00
142	2ky2-m1_B_C16_C17	AAA	AA00	87	0.16	AA00
143	2ky2-m2_B_C16_C17	AAA	AA00	86	0.20	AA00
144	2ky2-m3_B_C16_C17	AAA	AA00	82	0.18	AA00
145	2ky2-m4_B_C16_C17	AAA	AA00	87	0.17	AA00
146	2ky2-m5_B_C16_C17	AAA	AA00	86	0.18	AA00
147	2ky2-m6_B_C16_C17	AAA	AA00	84	0.19	AA00
148	2ky2-m7_B_C16_C17	AAA	AA00	77	0.23	AA00
149	2ky2-m8_B_C16_C17	AAA	AA00	85	0.18	AA00
150	2ky2-m9_B_C16_C17	AAA	AA00	79	0.21	AA00
151	2ky2-m10_B_C17_A18	AAA	AA00	84	0.20	AA00
152	2ky2-m1_B_C17_A18	AAA	AA00	78	0.25	AA00
153	2ky2-m2_B_C17_A18	AAA	AA00	84	0.21	AA00
154	2ky2-m3_B_C17_A18	AAA	AA00	74	0.30	AA00
155	2ky2-m4_B_C17_A18	AAA	AA00	81	0.24	AA00
156	2ky2-m5_B_C17_A18	AAA	AA00	73	0.30	AA00
157	2ky2-m6_B_C17_A18	AAA	AA00	87	0.21	AA00
158	2ky2-m7_B_C17_A18	AAA	AA00	86	0.14	AA00
159	2ky2-m8_B_C17_A18	AAA	AA00	83	0.22	AA00
160	2ky2-m9_B_C17_A18	AAA	AA00	84	0.15	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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B-A

B

IC

OPN

Z

N

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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