DNATCO v4.1: results

The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG

Results of the assignment of 200 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2ky0-m10_A_G1_A2	AAA	AA00	82	0.20	AA00
002	2ky0-m1_A_G1_A2	AAA	AA00	75	0.24	AA00
003	2ky0-m2_A_G1_A2	AAA	AA00	84	0.21	AA00
004	2ky0-m3_A_G1_A2	AAA	AA00	85	0.20	AA00
005	2ky0-m4_A_G1_A2	AAA	AA00	82	0.20	AA00
006	2ky0-m5_A_G1_A2	AAA	AA00	81	0.21	AA00
007	2ky0-m6_A_G1_A2	AAA	AA00	79	0.22	AA00
008	2ky0-m7_A_G1_A2	AAA	AA00	80	0.22	AA00
009	2ky0-m8_A_G1_A2	AAA	AA00	80	0.23	AA00
010	2ky0-m9_A_G1_A2	AAA	AA00	83	0.21	AA00
011	2ky0-m10_A_A2_C3	AAA	AA00	83	0.16	AA00
012	2ky0-m1_A_A2_C3	AAA	AA00	84	0.19	AA00
013	2ky0-m2_A_A2_C3	AAA	AA00	82	0.17	AA00
014	2ky0-m3_A_A2_C3	AAA	AA00	86	0.17	AA00
015	2ky0-m4_A_A2_C3	AAA	AA00	85	0.15	AA00
016	2ky0-m5_A_A2_C3	AAA	AA00	81	0.20	AA00
017	2ky0-m6_A_A2_C3	AAA	AA00	84	0.19	AA00
018	2ky0-m7_A_A2_C3	AAA	AA00	82	0.20	AA00
019	2ky0-m8_A_A2_C3	AAA	AA00	85	0.18	AA00
020	2ky0-m9_A_A2_C3	AAA	AA00	83	0.20	AA00
021	2ky0-m10_A_C3_G4	AAA	AA00	84	0.17	AA00
022	2ky0-m1_A_C3_G4	AAA	AA00	83	0.18	AA00
023	2ky0-m2_A_C3_G4	AAA	AA00	83	0.17	AA00
024	2ky0-m3_A_C3_G4	AAA	AA00	85	0.18	AA00
025	2ky0-m4_A_C3_G4	AAA	AA00	83	0.18	AA00
026	2ky0-m5_A_C3_G4	AAA	AA00	81	0.20	AA00
027	2ky0-m6_A_C3_G4	AAA	AA00	82	0.20	AA00
028	2ky0-m7_A_C3_G4	AAA	AA00	81	0.18	AA00
029	2ky0-m8_A_C3_G4	AAA	AA00	82	0.18	AA00
030	2ky0-m9_A_C3_G4	AAA	AA00	77	0.22	AA00
031	2ky0-m10_A_G4_A5	AAA	AA00	78	0.20	AA00
032	2ky0-m1_A_G4_A5	AAA	AA00	74	0.24	AA00
033	2ky0-m2_A_G4_A5	AAA	AA00	74	0.22	AA00
034	2ky0-m3_A_G4_A5	AAA	AA00	78	0.21	AA00
035	2ky0-m4_A_G4_A5	AAA	AA00	75	0.21	AA00
036	2ky0-m5_A_G4_A5	AAA	AA00	74	0.24	AA00
037	2ky0-m6_A_G4_A5	AAA	AA00	76	0.24	AA00
038	2ky0-m7_A_G4_A5	AAA	AA00	73	0.22	AA00
039	2ky0-m8_A_G4_A5	AAA	AA00	73	0.23	AA00
040	2ky0-m9_A_G4_A5	AAA	AA00	71	0.25	AA00
041	2ky0-m10_A_A5_G6	AAw	AA01	90	0.21	AA01
042	2ky0-m1_A_A5_G6	AAw	AA01	90	0.22	AA01
043	2ky0-m2_A_A5_G6	AAw	AA01	89	0.22	AA01
044	2ky0-m3_A_A5_G6	AAw	AA01	92	0.21	AA01
045	2ky0-m4_A_A5_G6	AAw	AA01	91	0.19	AA01
046	2ky0-m5_A_A5_G6	AAw	AA01	90	0.21	AA01
047	2ky0-m6_A_A5_G6	AAw	AA01	89	0.23	AA01
048	2ky0-m7_A_A5_G6	AAw	AA01	83	0.26	AA01
049	2ky0-m8_A_A5_G6	AAw	AA01	80	0.30	AA01
050	2ky0-m9_A_A5_G6	AAw	AA01	83	0.27	AA01
051	2ky0-m10_A_G6_C7	AAA	AA00	64	0.36	AA00
052	2ky0-m1_A_G6_C7	AAA	AA00	65	0.36	AA00
053	2ky0-m2_A_G6_C7	AAA	AA00	72	0.33	AA00
054	2ky0-m3_A_G6_C7	AAA	AA00	68	0.33	AA00
055	2ky0-m4_A_G6_C7	AAA	AA00	72	0.33	AA00
056	2ky0-m5_A_G6_C7	AAA	AA00	70	0.32	AA00
057	2ky0-m6_A_G6_C7	AAA	AA00	67	0.33	AA00
058	2ky0-m7_A_G6_C7	AAA	AA00	72	0.31	AA00
059	2ky0-m8_A_G6_C7	AAA	AA00	69	0.32	AA00
060	2ky0-m9_A_G6_C7	AAA	AA00	56	0.38	AA00
061	2ky0-m10_A_C7_G8	AAA	AA00	70	0.22	AA00
062	2ky0-m1_A_C7_G8	AAA	AA00	70	0.23	AA00
063	2ky0-m2_A_C7_G8	AAA	AA00	75	0.20	AA00
064	2ky0-m3_A_C7_G8	AAA	AA00	84	0.16	AA00
065	2ky0-m4_A_C7_G8	AAA	AA00	74	0.21	AA00
066	2ky0-m5_A_C7_G8	AAA	AA00	84	0.16	AA00
067	2ky0-m6_A_C7_G8	AAA	AA00	80	0.18	AA00
068	2ky0-m7_A_C7_G8	AAA	AA00	82	0.16	AA00
069	2ky0-m8_A_C7_G8	AAA	AA00	79	0.20	AA00
070	2ky0-m9_A_C7_G8	AAA	AA00	66	0.24	AA00
071	2ky0-m10_A_G8_U9	AAA	AA00	75	0.20	AA00
072	2ky0-m1_A_G8_U9	AAA	AA00	77	0.19	AA00
073	2ky0-m2_A_G8_U9	AAA	AA00	82	0.18	AA00
074	2ky0-m3_A_G8_U9	AAA	AA00	87	0.16	AA00
075	2ky0-m4_A_G8_U9	AAA	AA00	86	0.14	AA00
076	2ky0-m5_A_G8_U9	AAA	AA00	84	0.16	AA00
077	2ky0-m6_A_G8_U9	AAA	AA00	80	0.19	AA00
078	2ky0-m7_A_G8_U9	AAA	AA00	84	0.16	AA00
079	2ky0-m8_A_G8_U9	AAA	AA00	81	0.19	AA00
080	2ky0-m9_A_G8_U9	AAA	AA00	85	0.15	AA00
081	2ky0-m10_A_U9_C10	AAA	AA00	74	0.17	AA00
082	2ky0-m1_A_U9_C10	AAA	AA00	81	0.19	AA00
083	2ky0-m2_A_U9_C10	AAA	AA00	83	0.20	AA00
084	2ky0-m3_A_U9_C10	AAA	AA00	82	0.18	AA00
085	2ky0-m4_A_U9_C10	AAA	AA00	83	0.19	AA00
086	2ky0-m5_A_U9_C10	AAA	AA00	75	0.16	AA00
087	2ky0-m6_A_U9_C10	AAA	AA00	84	0.17	AA00
088	2ky0-m7_A_U9_C10	AAA	AA00	83	0.18	AA00
089	2ky0-m8_A_U9_C10	AAA	AA00	74	0.18	AA00
090	2ky0-m9_A_U9_C10	AAA	AA00	82	0.17	AA00
091	2ky0-m10_A_C10_A11	NAN	NANT	0	1.25	ZZ01
092	2ky0-m1_A_C10_A11	AAA	AA00	84	0.18	AA00
093	2ky0-m2_A_C10_A11	AAA	AA00	74	0.29	AA00
094	2ky0-m3_A_C10_A11	AAA	AA00	78	0.28	AA00
095	2ky0-m4_A_C10_A11	AAA	AA00	86	0.15	AA00
096	2ky0-m5_A_C10_A11	NAN	NANT	0	1.25	ZZ01
097	2ky0-m6_A_C10_A11	AAA	AA00	74	0.28	AA00
098	2ky0-m7_A_C10_A11	AAA	AA00	77	0.25	AA00
099	2ky0-m8_A_C10_A11	NAN	NANT	0	1.22	ZZ01
100	2ky0-m9_A_C10_A11	AAA	AA00	77	0.28	AA00
101	2ky0-m10_B_G12_A13	AAA	AA00	66	0.27	AA00
102	2ky0-m1_B_G12_A13	AAA	AA00	80	0.21	AA00
103	2ky0-m2_B_G12_A13	AAA	AA00	79	0.22	AA00
104	2ky0-m3_B_G12_A13	AAA	AA00	81	0.21	AA00
105	2ky0-m4_B_G12_A13	AAA	AA00	87	0.18	AA00
106	2ky0-m5_B_G12_A13	AAA	AA00	71	0.25	AA00
107	2ky0-m6_B_G12_A13	AAA	AA00	84	0.19	AA00
108	2ky0-m7_B_G12_A13	AAA	AA00	82	0.19	AA00
109	2ky0-m8_B_G12_A13	AAA	AA00	75	0.23	AA00
110	2ky0-m9_B_G12_A13	AAA	AA00	86	0.20	AA00
111	2ky0-m10_B_A13_C14	AAA	AA00	76	0.23	AA00
112	2ky0-m1_B_A13_C14	AAA	AA00	84	0.16	AA00
113	2ky0-m2_B_A13_C14	AAA	AA00	84	0.17	AA00
114	2ky0-m3_B_A13_C14	AAA	AA00	84	0.18	AA00
115	2ky0-m4_B_A13_C14	AAA	AA00	85	0.15	AA00
116	2ky0-m5_B_A13_C14	AAA	AA00	80	0.19	AA00
117	2ky0-m6_B_A13_C14	AAA	AA00	81	0.20	AA00
118	2ky0-m7_B_A13_C14	AAA	AA00	85	0.15	AA00
119	2ky0-m8_B_A13_C14	AAA	AA00	78	0.22	AA00
120	2ky0-m9_B_A13_C14	AAA	AA00	84	0.15	AA00
121	2ky0-m10_B_C14_G15	AAA	AA00	79	0.19	AA00
122	2ky0-m1_B_C14_G15	AAA	AA00	83	0.18	AA00
123	2ky0-m2_B_C14_G15	AAA	AA00	83	0.18	AA00
124	2ky0-m3_B_C14_G15	AAA	AA00	81	0.19	AA00
125	2ky0-m4_B_C14_G15	AAA	AA00	81	0.19	AA00
126	2ky0-m5_B_C14_G15	AAA	AA00	81	0.19	AA00
127	2ky0-m6_B_C14_G15	AAA	AA00	83	0.20	AA00
128	2ky0-m7_B_C14_G15	AAA	AA00	85	0.17	AA00
129	2ky0-m8_B_C14_G15	AAA	AA00	79	0.22	AA00
130	2ky0-m9_B_C14_G15	AAA	AA00	83	0.18	AA00
131	2ky0-m10_B_G15_A16	AAA	AA00	73	0.23	AA00
132	2ky0-m1_B_G15_A16	AAA	AA00	80	0.18	AA00
133	2ky0-m2_B_G15_A16	AAA	AA00	80	0.18	AA00
134	2ky0-m3_B_G15_A16	AAA	AA00	78	0.19	AA00
135	2ky0-m4_B_G15_A16	AAA	AA00	76	0.23	AA00
136	2ky0-m5_B_G15_A16	AAA	AA00	76	0.21	AA00
137	2ky0-m6_B_G15_A16	AAA	AA00	81	0.18	AA00
138	2ky0-m7_B_G15_A16	AAA	AA00	76	0.18	AA00
139	2ky0-m8_B_G15_A16	AAA	AA00	75	0.20	AA00
140	2ky0-m9_B_G15_A16	AAA	AA00	72	0.21	AA00
141	2ky0-m10_B_A16_G17	AAw	AA01	93	0.19	AA01
142	2ky0-m1_B_A16_G17	AAw	AA01	93	0.18	AA01
143	2ky0-m2_B_A16_G17	AAw	AA01	94	0.16	AA01
144	2ky0-m3_B_A16_G17	AAw	AA01	93	0.18	AA01
145	2ky0-m4_B_A16_G17	AAw	AA01	90	0.22	AA01
146	2ky0-m5_B_A16_G17	AAw	AA01	88	0.16	AA01
147	2ky0-m6_B_A16_G17	AAw	AA01	91	0.16	AA01
148	2ky0-m7_B_A16_G17	AAw	AA01	72	0.23	AA01
149	2ky0-m8_B_A16_G17	NAN	NANT	0	0.50	AA10
150	2ky0-m9_B_A16_G17	AAw	AA01	84	0.22	AA01
151	2ky0-m10_B_G17_C18	AAA	AA00	68	0.34	AA00
152	2ky0-m1_B_G17_C18	AAA	AA00	65	0.35	AA00
153	2ky0-m2_B_G17_C18	AAA	AA00	74	0.29	AA00
154	2ky0-m3_B_G17_C18	AAA	AA00	75	0.31	AA00
155	2ky0-m4_B_G17_C18	AAA	AA00	66	0.35	AA00
156	2ky0-m5_B_G17_C18	AAA	AA00	73	0.32	AA00
157	2ky0-m6_B_G17_C18	AAA	AA00	74	0.31	AA00
158	2ky0-m7_B_G17_C18	AAA	AA00	75	0.26	AA00
159	2ky0-m8_B_G17_C18	AAA	AA00	60	0.32	AA00
160	2ky0-m9_B_G17_C18	AAA	AA00	73	0.31	AA00
161	2ky0-m10_B_C18_G19	AAA	AA00	83	0.17	AA00
162	2ky0-m1_B_C18_G19	AAA	AA00	74	0.21	AA00
163	2ky0-m2_B_C18_G19	AAA	AA00	84	0.15	AA00
164	2ky0-m3_B_C18_G19	AAA	AA00	83	0.16	AA00
165	2ky0-m4_B_C18_G19	AAA	AA00	74	0.20	AA00
166	2ky0-m5_B_C18_G19	AAA	AA00	75	0.20	AA00
167	2ky0-m6_B_C18_G19	AAA	AA00	80	0.18	AA00
168	2ky0-m7_B_C18_G19	AAA	AA00	83	0.15	AA00
169	2ky0-m8_B_C18_G19	AAA	AA00	76	0.19	AA00
170	2ky0-m9_B_C18_G19	AAA	AA00	78	0.18	AA00
171	2ky0-m10_B_G19_U20	AAA	AA00	84	0.17	AA00
172	2ky0-m1_B_G19_U20	AAA	AA00	81	0.17	AA00
173	2ky0-m2_B_G19_U20	AAA	AA00	82	0.17	AA00
174	2ky0-m3_B_G19_U20	AAA	AA00	89	0.15	AA00
175	2ky0-m4_B_G19_U20	AAA	AA00	86	0.15	AA00
176	2ky0-m5_B_G19_U20	AAA	AA00	83	0.17	AA00
177	2ky0-m6_B_G19_U20	AAA	AA00	87	0.15	AA00
178	2ky0-m7_B_G19_U20	AAA	AA00	87	0.16	AA00
179	2ky0-m8_B_G19_U20	AAA	AA00	80	0.16	AA00
180	2ky0-m9_B_G19_U20	AAA	AA00	84	0.16	AA00
181	2ky0-m10_B_U20_C21	AAA	AA00	81	0.18	AA00
182	2ky0-m1_B_U20_C21	AAA	AA00	84	0.17	AA00
183	2ky0-m2_B_U20_C21	AAA	AA00	84	0.17	AA00
184	2ky0-m3_B_U20_C21	AAA	AA00	84	0.20	AA00
185	2ky0-m4_B_U20_C21	AAA	AA00	85	0.17	AA00
186	2ky0-m5_B_U20_C21	AAA	AA00	87	0.17	AA00
187	2ky0-m6_B_U20_C21	AAA	AA00	83	0.19	AA00
188	2ky0-m7_B_U20_C21	AAA	AA00	86	0.18	AA00
189	2ky0-m8_B_U20_C21	AAA	AA00	84	0.17	AA00
190	2ky0-m9_B_U20_C21	AAA	AA00	85	0.18	AA00
191	2ky0-m10_B_C21_A22	AAA	AA00	83	0.20	AA00
192	2ky0-m1_B_C21_A22	AAA	AA00	72	0.30	AA00
193	2ky0-m2_B_C21_A22	AAA	AA00	76	0.28	AA00
194	2ky0-m3_B_C21_A22	AAA	AA00	81	0.23	AA00
195	2ky0-m4_B_C21_A22	AAA	AA00	79	0.28	AA00
196	2ky0-m5_B_C21_A22	AAA	AA00	82	0.23	AA00
197	2ky0-m6_B_C21_A22	AAA	AA00	83	0.22	AA00
198	2ky0-m7_B_C21_A22	AAA	AA00	70	0.32	AA00
199	2ky0-m8_B_C21_A22	AAA	AA00	71	0.32	AA00
200	2ky0-m9_B_C21_A22	AAA	AA00	74	0.30	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 200 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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