DNATCO v4.1: results

The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA

Results of the assignment of 140 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2kxz-m1_A_G1_A2	AAA	AA00	83	0.21	AA00
002	2kxz-m2_A_G1_A2	AAA	AA00	87	0.18	AA00
003	2kxz-m3_A_G1_A2	AAA	AA00	84	0.17	AA00
004	2kxz-m4_A_G1_A2	AAA	AA00	85	0.18	AA00
005	2kxz-m5_A_G1_A2	AAw	AA01	93	0.18	AA01
006	2kxz-m6_A_G1_A2	AAA	AA00	83	0.20	AA00
007	2kxz-m7_A_G1_A2	AAA	AA00	83	0.19	AA00
008	2kxz-m1_A_A2_C3	AAA	AA00	85	0.16	AA00
009	2kxz-m2_A_A2_C3	AAA	AA00	79	0.24	AA00
010	2kxz-m3_A_A2_C3	AAA	AA00	79	0.24	AA00
011	2kxz-m4_A_A2_C3	AAA	AA00	86	0.18	AA00
012	2kxz-m5_A_A2_C3	AAA	AA00	84	0.24	AA00
013	2kxz-m6_A_A2_C3	AAA	AA00	80	0.21	AA00
014	2kxz-m7_A_A2_C3	AAA	AA00	75	0.26	AA00
015	2kxz-m1_A_C3_A4	AAA	AA00	81	0.15	AA00
016	2kxz-m2_A_C3_A4	AAA	AA00	77	0.18	AA00
017	2kxz-m3_A_C3_A4	AAA	AA00	83	0.17	AA00
018	2kxz-m4_A_C3_A4	AAA	AA00	70	0.21	AA00
019	2kxz-m5_A_C3_A4	AAA	AA00	77	0.19	AA00
020	2kxz-m6_A_C3_A4	AAA	AA00	82	0.16	AA00
021	2kxz-m7_A_C3_A4	AAA	AA00	75	0.20	AA00
022	2kxz-m1_A_A4_A5	AAA	AA00	80	0.15	AA00
023	2kxz-m2_A_A4_A5	AAA	AA00	80	0.18	AA00
024	2kxz-m3_A_A4_A5	AAA	AA00	81	0.17	AA00
025	2kxz-m4_A_A4_A5	AAA	AA00	76	0.18	AA00
026	2kxz-m5_A_A4_A5	AAA	AA00	77	0.19	AA00
027	2kxz-m6_A_A4_A5	AAA	AA00	79	0.17	AA00
028	2kxz-m7_A_A4_A5	AAA	AA00	79	0.16	AA00
029	2kxz-m1_A_A5_G6	AAw	AA01	92	0.20	AA01
030	2kxz-m2_A_A5_G6	AAw	AA01	90	0.24	AA01
031	2kxz-m3_A_A5_G6	AAw	AA01	91	0.24	AA01
032	2kxz-m4_A_A5_G6	AAw	AA01	89	0.23	AA01
033	2kxz-m5_A_A5_G6	AAw	AA01	89	0.24	AA01
034	2kxz-m6_A_A5_G6	AAw	AA01	89	0.21	AA01
035	2kxz-m7_A_A5_G6	AAw	AA01	90	0.22	AA01
036	2kxz-m1_A_G6_U7	AAA	AA00	62	0.33	AA00
037	2kxz-m2_A_G6_U7	AAA	AA00	62	0.32	AA00
038	2kxz-m3_A_G6_U7	AAA	AA00	48	0.38	AA00
039	2kxz-m4_A_G6_U7	AAA	AA00	58	0.33	AA00
040	2kxz-m5_A_G6_U7	AAA	AA00	61	0.35	AA00
041	2kxz-m6_A_G6_U7	AAA	AA00	57	0.36	AA00
042	2kxz-m7_A_G6_U7	AAA	AA00	64	0.32	AA00
043	2kxz-m1_A_U7_G8	AAA	AA00	85	0.15	AA00
044	2kxz-m2_A_U7_G8	AAA	AA00	84	0.16	AA00
045	2kxz-m3_A_U7_G8	AAA	AA00	83	0.18	AA00
046	2kxz-m4_A_U7_G8	AAA	AA00	87	0.14	AA00
047	2kxz-m5_A_U7_G8	AAA	AA00	83	0.17	AA00
048	2kxz-m6_A_U7_G8	AAA	AA00	82	0.18	AA00
049	2kxz-m7_A_U7_G8	AAA	AA00	84	0.16	AA00
050	2kxz-m1_A_G8_U9	AAA	AA00	91	0.15	AA00
051	2kxz-m2_A_G8_U9	AAA	AA00	83	0.21	AA00
052	2kxz-m3_A_G8_U9	AAA	AA00	81	0.20	AA00
053	2kxz-m4_A_G8_U9	AAA	AA00	89	0.15	AA00
054	2kxz-m5_A_G8_U9	AAA	AA00	81	0.19	AA00
055	2kxz-m6_A_G8_U9	AAA	AA00	78	0.22	AA00
056	2kxz-m7_A_G8_U9	AAA	AA00	84	0.20	AA00
057	2kxz-m1_A_U9_C10	AAA	AA00	85	0.19	AA00
058	2kxz-m2_A_U9_C10	AAA	AA00	80	0.21	AA00
059	2kxz-m3_A_U9_C10	AAA	AA00	77	0.23	AA00
060	2kxz-m4_A_U9_C10	AAA	AA00	81	0.20	AA00
061	2kxz-m5_A_U9_C10	AAA	AA00	82	0.20	AA00
062	2kxz-m6_A_U9_C10	AAA	AA00	83	0.17	AA00
063	2kxz-m7_A_U9_C10	AAA	AA00	87	0.17	AA00
064	2kxz-m1_A_C10_A11	AAA	AA00	87	0.16	AA00
065	2kxz-m2_A_C10_A11	AAA	AA00	87	0.14	AA00
066	2kxz-m3_A_C10_A11	AAA	AA00	83	0.15	AA00
067	2kxz-m4_A_C10_A11	AAA	AA00	87	0.15	AA00
068	2kxz-m5_A_C10_A11	AAA	AA00	84	0.16	AA00
069	2kxz-m6_A_C10_A11	AAA	AA00	84	0.19	AA00
070	2kxz-m7_A_C10_A11	AAA	AA00	85	0.18	AA00
071	2kxz-m1_B_G12_A13	AAA	AA00	85	0.18	AA00
072	2kxz-m2_B_G12_A13	AAA	AA00	86	0.17	AA00
073	2kxz-m3_B_G12_A13	AAA	AA00	84	0.20	AA00
074	2kxz-m4_B_G12_A13	AAA	AA00	83	0.21	AA00
075	2kxz-m5_B_G12_A13	AAA	AA00	87	0.17	AA00
076	2kxz-m6_B_G12_A13	AAA	AA00	84	0.19	AA00
077	2kxz-m7_B_G12_A13	AAA	AA00	85	0.17	AA00
078	2kxz-m1_B_A13_C14	AAA	AA00	88	0.17	AA00
079	2kxz-m2_B_A13_C14	AAA	AA00	80	0.21	AA00
080	2kxz-m3_B_A13_C14	AAA	AA00	83	0.20	AA00
081	2kxz-m4_B_A13_C14	AAA	AA00	86	0.16	AA00
082	2kxz-m5_B_A13_C14	AAA	AA00	85	0.19	AA00
083	2kxz-m6_B_A13_C14	AAA	AA00	77	0.22	AA00
084	2kxz-m7_B_A13_C14	AAA	AA00	80	0.23	AA00
085	2kxz-m1_B_C14_A15	AAA	AA00	79	0.17	AA00
086	2kxz-m2_B_C14_A15	AAA	AA00	81	0.16	AA00
087	2kxz-m3_B_C14_A15	AAA	AA00	72	0.20	AA00
088	2kxz-m4_B_C14_A15	AAA	AA00	81	0.15	AA00
089	2kxz-m5_B_C14_A15	AAA	AA00	73	0.20	AA00
090	2kxz-m6_B_C14_A15	AAA	AA00	82	0.18	AA00
091	2kxz-m7_B_C14_A15	AAA	AA00	77	0.19	AA00
092	2kxz-m1_B_A15_A16	AAA	AA00	78	0.19	AA00
093	2kxz-m2_B_A15_A16	AAA	AA00	78	0.16	AA00
094	2kxz-m3_B_A15_A16	AAA	AA00	79	0.16	AA00
095	2kxz-m4_B_A15_A16	AAA	AA00	77	0.16	AA00
096	2kxz-m5_B_A15_A16	AAA	AA00	80	0.16	AA00
097	2kxz-m6_B_A15_A16	AAA	AA00	81	0.15	AA00
098	2kxz-m7_B_A15_A16	AAA	AA00	80	0.18	AA00
099	2kxz-m1_B_A16_G17	AAw	AA01	88	0.25	AA01
100	2kxz-m2_B_A16_G17	AAw	AA01	87	0.28	AA01
101	2kxz-m3_B_A16_G17	AAw	AA01	93	0.21	AA01
102	2kxz-m4_B_A16_G17	AAw	AA01	85	0.23	AA01
103	2kxz-m5_B_A16_G17	AAw	AA01	92	0.21	AA01
104	2kxz-m6_B_A16_G17	AAw	AA01	90	0.25	AA01
105	2kxz-m7_B_A16_G17	AAw	AA01	89	0.26	AA01
106	2kxz-m1_B_G17_U18	AAA	AA00	54	0.37	AA00
107	2kxz-m2_B_G17_U18	AAA	AA00	53	0.35	AA00
108	2kxz-m3_B_G17_U18	AAA	AA00	65	0.34	AA00
109	2kxz-m4_B_G17_U18	AAA	AA00	62	0.34	AA00
110	2kxz-m5_B_G17_U18	AAA	AA00	67	0.32	AA00
111	2kxz-m6_B_G17_U18	AAA	AA00	57	0.34	AA00
112	2kxz-m7_B_G17_U18	AAA	AA00	57	0.35	AA00
113	2kxz-m1_B_U18_G19	AAA	AA00	84	0.18	AA00
114	2kxz-m2_B_U18_G19	AAA	AA00	84	0.15	AA00
115	2kxz-m3_B_U18_G19	AAA	AA00	85	0.15	AA00
116	2kxz-m4_B_U18_G19	AAA	AA00	83	0.17	AA00
117	2kxz-m5_B_U18_G19	AAA	AA00	84	0.14	AA00
118	2kxz-m6_B_U18_G19	AAA	AA00	85	0.15	AA00
119	2kxz-m7_B_U18_G19	AAA	AA00	80	0.17	AA00
120	2kxz-m1_B_G19_U20	AAA	AA00	88	0.16	AA00
121	2kxz-m2_B_G19_U20	AAA	AA00	85	0.19	AA00
122	2kxz-m3_B_G19_U20	AAA	AA00	85	0.19	AA00
123	2kxz-m4_B_G19_U20	AAA	AA00	85	0.17	AA00
124	2kxz-m5_B_G19_U20	AAA	AA00	85	0.21	AA00
125	2kxz-m6_B_G19_U20	AAA	AA00	87	0.17	AA00
126	2kxz-m7_B_G19_U20	AAA	AA00	78	0.24	AA00
127	2kxz-m1_B_U20_C21	AAA	AA00	78	0.19	AA00
128	2kxz-m2_B_U20_C21	AAA	AA00	86	0.19	AA00
129	2kxz-m3_B_U20_C21	AAA	AA00	87	0.18	AA00
130	2kxz-m4_B_U20_C21	AAA	AA00	82	0.21	AA00
131	2kxz-m5_B_U20_C21	AAA	AA00	86	0.18	AA00
132	2kxz-m6_B_U20_C21	AAA	AA00	82	0.20	AA00
133	2kxz-m7_B_U20_C21	AAA	AA00	82	0.21	AA00
134	2kxz-m1_B_C21_A22	AAA	AA00	86	0.15	AA00
135	2kxz-m2_B_C21_A22	AAA	AA00	86	0.19	AA00
136	2kxz-m3_B_C21_A22	AAA	AA00	85	0.18	AA00
137	2kxz-m4_B_C21_A22	AAA	AA00	85	0.16	AA00
138	2kxz-m5_B_C21_A22	AAA	AA00	89	0.15	AA00
139	2kxz-m6_B_C21_A22	AAA	AA00	86	0.18	AA00
140	2kxz-m7_B_C21_A22	AAA	AA00	86	0.16	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 140 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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