Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR structure of human Tra2beta1 RRM in complex with AAGAAC RNA

Results of the assignment of 60 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012kxn-m10_A_A1_A2NANNANT00.66 BB03
022kxn-m11_A_A1_A2NANNANT00.84 BB12
032kxn-m12_A_A1_A2NANNANT00.55 AA01
042kxn-m1_A_A1_A2NANNANT00.83 BB12
052kxn-m2_A_A1_A2NANNANT00.65 BB03
062kxn-m3_A_A1_A2NANNANT00.79 BB12
072kxn-m4_A_A1_A2NANNANT00.56 AA01
082kxn-m5_A_A1_A2NANNANT00.58 AA01
092kxn-m6_A_A1_A2NANNANT00.62 BB03
102kxn-m7_A_A1_A2NANNANT00.64 BB03
112kxn-m8_A_A1_A2NANNANT00.56 AA01
122kxn-m9_A_A1_A2NANNANT00.56 AA01
132kxn-m10_A_A2_G3NANNANT01.55 ZZ01
142kxn-m11_A_A2_G3NANNANT01.84 AB02
152kxn-m12_A_A2_G3NANNANT01.80 AB02
162kxn-m1_A_A2_G3NANNANT02.03 OP22
172kxn-m2_A_A2_G3NANNANT02.20 OP15
182kxn-m3_A_A2_G3NANNANT01.67 ZZ01
192kxn-m4_A_A2_G3NANNANT01.87 AB02
202kxn-m5_A_A2_G3NANNANT01.83 AB02
212kxn-m6_A_A2_G3NANNANT02.06 OP22
222kxn-m7_A_A2_G3NANNANT02.03 OP22
232kxn-m8_A_A2_G3NANNANT01.88 AB02
242kxn-m9_A_A2_G3NANNANT01.80 AB02
252kxn-m10_A_G3_A4NANNANT01.28 ZZ2S
262kxn-m11_A_G3_A4NANNANT00.92 OP22
272kxn-m12_A_G3_A4NANNANT00.94 OP22
282kxn-m1_A_G3_A4NANNANT00.98 OP22
292kxn-m2_A_G3_A4NANNANT01.57 ZZ2S
302kxn-m3_A_G3_A4NANNANT01.48 ZZ2S
312kxn-m4_A_G3_A4NANNANT01.03 OP22
322kxn-m5_A_G3_A4NANNANT01.69 ZZ2S
332kxn-m6_A_G3_A4NANNANT01.05 OP22
342kxn-m7_A_G3_A4NANNANT00.95 OP22
352kxn-m8_A_G3_A4NANNANT01.52 ZZ2S
362kxn-m9_A_G3_A4NANNANT00.95 OP22
372kxn-m10_A_A4_A5NANNANT01.28 BBS1
382kxn-m11_A_A4_A5NANNANT00.83 OP08
392kxn-m12_A_A4_A5NANNANT01.28 OP27
402kxn-m1_A_A4_A5NANNANT00.79 OP08
412kxn-m2_A_A4_A5NANNANT01.07 BB05
422kxn-m3_A_A4_A5NANNANT01.07 BB11
432kxn-m4_A_A4_A5NANNANT01.42 BB02
442kxn-m5_A_A4_A5NANNANT01.46 BB12
452kxn-m6_A_A4_A5NANNANT01.31 BBS1
462kxn-m7_A_A4_A5NANNANT01.39 BBS1
472kxn-m8_A_A4_A5NANNANT01.10 BB05
482kxn-m9_A_A4_A5NANNANT01.39 AA11
492kxn-m10_A_A5_C6NANNANT01.48 BB04
502kxn-m11_A_A5_C6NANNANT01.45 BB16
512kxn-m12_A_A5_C6NANNANT01.48 BB16
522kxn-m1_A_A5_C6NANNANT01.44 BB16
532kxn-m2_A_A5_C6NANNANT01.47 BB16
542kxn-m3_A_A5_C6NANNANT01.47 BB16
552kxn-m4_A_A5_C6NANNANT01.44 BB16
562kxn-m5_A_A5_C6NANNANT01.47 BB16
572kxn-m6_A_A5_C6NANNANT01.53 BB04
582kxn-m7_A_A5_C6NANNANT01.52 BB04
592kxn-m8_A_A5_C6NANNANT01.48 BB16
602kxn-m9_A_A5_C6NANNANT01.45 BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N