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Conformers: ABBIImiBZICOPNSYNN
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Recognition of HIV TAR RNA by peptide mimetic of Tat protein

Results of the assignment of 280 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kx5-m10_A_G17_G18AAAAA00970.20 AA00
0022kx5-m1_A_G17_G18AAAAA00970.20 AA00
0032kx5-m2_A_G17_G18AAAAA00980.20 AA00
0042kx5-m3_A_G17_G18AAAAA00970.19 AA00
0052kx5-m4_A_G17_G18AAAAA00960.20 AA00
0062kx5-m5_A_G17_G18AAAAA00970.21 AA00
0072kx5-m6_A_G17_G18AAAAA00970.20 AA00
0082kx5-m7_A_G17_G18AAAAA00970.20 AA00
0092kx5-m8_A_G17_G18AAAAA00970.20 AA00
0102kx5-m9_A_G17_G18AAAAA00970.20 AA00
0112kx5-m10_A_G18_C19AAAAA00980.24 AA00
0122kx5-m1_A_G18_C19AAAAA00980.25 AA00
0132kx5-m2_A_G18_C19AAAAA00980.26 AA00
0142kx5-m3_A_G18_C19AAAAA00970.24 AA00
0152kx5-m4_A_G18_C19AAAAA00980.25 AA00
0162kx5-m5_A_G18_C19AAAAA00980.27 AA00
0172kx5-m6_A_G18_C19AAAAA00980.24 AA00
0182kx5-m7_A_G18_C19AAAAA00980.25 AA00
0192kx5-m8_A_G18_C19AAAAA00970.26 AA00
0202kx5-m9_A_G18_C19AAAAA00970.25 AA00
0212kx5-m10_A_C19_A20AAAAA00980.23 AA00
0222kx5-m1_A_C19_A20AAAAA00980.24 AA00
0232kx5-m2_A_C19_A20AAAAA00980.24 AA00
0242kx5-m3_A_C19_A20AAAAA00980.24 AA00
0252kx5-m4_A_C19_A20AAAAA00980.25 AA00
0262kx5-m5_A_C19_A20AAAAA00980.25 AA00
0272kx5-m6_A_C19_A20AAAAA00980.24 AA00
0282kx5-m7_A_C19_A20AAAAA00980.25 AA00
0292kx5-m8_A_C19_A20AAAAA00980.25 AA00
0302kx5-m9_A_C19_A20AAAAA00980.25 AA00
0312kx5-m10_A_A20_G21AAAAA00960.23 AA00
0322kx5-m1_A_A20_G21AAAAA00970.22 AA00
0332kx5-m2_A_A20_G21AAAAA00940.24 AA00
0342kx5-m3_A_A20_G21AAAAA00960.24 AA00
0352kx5-m4_A_A20_G21AAAAA00960.24 AA00
0362kx5-m5_A_A20_G21AAAAA00940.25 AA00
0372kx5-m6_A_A20_G21AAAAA00970.22 AA00
0382kx5-m7_A_A20_G21AAAAA00970.23 AA00
0392kx5-m8_A_A20_G21AAAAA00960.23 AA00
0402kx5-m9_A_A20_G21AAAAA00970.23 AA00
0412kx5-m10_A_G21_A22AAAAA00970.27 AA00
0422kx5-m1_A_G21_A22AAAAA00970.27 AA00
0432kx5-m2_A_G21_A22AAAAA00960.28 AA00
0442kx5-m3_A_G21_A22AAAAA00970.27 AA00
0452kx5-m4_A_G21_A22AAAAA00960.28 AA00
0462kx5-m5_A_G21_A22AAAAA00970.28 AA00
0472kx5-m6_A_G21_A22AAAAA00970.27 AA00
0482kx5-m7_A_G21_A22AAAAA00970.27 AA00
0492kx5-m8_A_G21_A22AAAAA00960.28 AA00
0502kx5-m9_A_G21_A22AAAAA00970.26 AA00
0512kx5-m10_A_A22_U23A-BAB04770.34 AB04
0522kx5-m1_A_A22_U23A-BAB05550.36 AB05
0532kx5-m2_A_A22_U23A-BAB05430.41 AB05
0542kx5-m3_A_A22_U23A-BAB04800.26 AB04
0552kx5-m4_A_A22_U23A-BAB05480.42 AB05
0562kx5-m5_A_A22_U23A-BAB05480.39 AB05
0572kx5-m6_A_A22_U23A-BAB05390.41 AB05
0582kx5-m7_A_A22_U23A-BAB05530.35 AB05
0592kx5-m8_A_A22_U23A-BAB05380.43 AB05
0602kx5-m9_A_A22_U23A-BAB04800.28 AB04
0612kx5-m10_A_U23_C24NANNANT01.36 OP11
0622kx5-m1_A_U23_C24NANNANT01.56 OP12
0632kx5-m2_A_U23_C24NANNANT01.49 OP12
0642kx5-m3_A_U23_C24NANNANT01.40 OP11
0652kx5-m4_A_U23_C24NANNANT01.51 OP12
0662kx5-m5_A_U23_C24NANNANT01.55 OP12
0672kx5-m6_A_U23_C24NANNANT01.52 OP12
0682kx5-m7_A_U23_C24NANNANT01.58 OP12
0692kx5-m8_A_U23_C24NANNANT01.49 OP12
0702kx5-m9_A_U23_C24NANNANT01.46 OP11
0712kx5-m10_A_C24_U25NANNANT01.51 IC02
0722kx5-m1_A_C24_U25NANNANT01.51 OP05
0732kx5-m2_A_C24_U25NANNANT01.45 OP05
0742kx5-m3_A_C24_U25NANNANT01.14 ZZ01
0752kx5-m4_A_C24_U25NANNANT01.48 OP05
0762kx5-m5_A_C24_U25NANNANT01.03 ZZ01
0772kx5-m6_A_C24_U25NANNANT01.37 OP19
0782kx5-m7_A_C24_U25NANNANT01.56 OP05
0792kx5-m8_A_C24_U25NANNANT01.48 OP05
0802kx5-m9_A_C24_U25NANNANT01.17 ZZ01
0812kx5-m10_A_U25_G26NANNANT01.41 OP05
0822kx5-m1_A_U25_G26NANNANT01.16 OP05
0832kx5-m2_A_U25_G26NANNANT01.20 OP05
0842kx5-m3_A_U25_G26NANNANT01.30 OP05
0852kx5-m4_A_U25_G26NANNANT01.20 OP05
0862kx5-m5_A_U25_G26NANNANT00.90 OP05
0872kx5-m6_A_U25_G26NANNANT01.32 OP05
0882kx5-m7_A_U25_G26NANNANT01.14 OP05
0892kx5-m8_A_U25_G26NANNANT01.23 OP05
0902kx5-m9_A_U25_G26NANNANT01.23 OP05
0912kx5-m10_A_G26_A27AAAAA00840.35 AA00
0922kx5-m1_A_G26_A27AAAAA00800.35 AA00
0932kx5-m2_A_G26_A27AAAAA00780.35 AA00
0942kx5-m3_A_G26_A27AAAAA00850.34 AA00
0952kx5-m4_A_G26_A27AAAAA00840.34 AA00
0962kx5-m5_A_G26_A27AAAAA00900.35 AA00
0972kx5-m6_A_G26_A27AAAAA00850.33 AA00
0982kx5-m7_A_G26_A27AAAAA00840.34 AA00
0992kx5-m8_A_G26_A27AAAAA00850.34 AA00
1002kx5-m9_A_G26_A27AAAAA00820.34 AA00
1012kx5-m10_A_A27_G28AAAAA00930.34 AA00
1022kx5-m1_A_A27_G28AAAAA00900.35 AA00
1032kx5-m2_A_A27_G28AAAAA00910.35 AA00
1042kx5-m3_A_A27_G28AAAAA00940.33 AA00
1052kx5-m4_A_A27_G28AAAAA00940.33 AA00
1062kx5-m5_A_A27_G28AAAAA00940.33 AA00
1072kx5-m6_A_A27_G28AAAAA00920.33 AA00
1082kx5-m7_A_A27_G28AAAAA00960.33 AA00
1092kx5-m8_A_A27_G28AAAAA00940.34 AA00
1102kx5-m9_A_A27_G28AAAAA00930.34 AA00
1112kx5-m10_A_G28_C29AAAAA00960.32 AA00
1122kx5-m1_A_G28_C29AAAAA00960.30 AA00
1132kx5-m2_A_G28_C29AAAAA00950.34 AA00
1142kx5-m3_A_G28_C29AAAAA00960.32 AA00
1152kx5-m4_A_G28_C29AAAAA00950.32 AA00
1162kx5-m5_A_G28_C29AAAAA00940.33 AA00
1172kx5-m6_A_G28_C29AAAAA00970.30 AA00
1182kx5-m7_A_G28_C29AAAAA00950.33 AA00
1192kx5-m8_A_G28_C29AAAAA00970.31 AA00
1202kx5-m9_A_G28_C29AAAAA00960.32 AA00
1212kx5-m10_A_C29_C30AAAAA00920.30 AA00
1222kx5-m1_A_C29_C30AAAAA00910.30 AA00
1232kx5-m2_A_C29_C30AAAAA00930.31 AA00
1242kx5-m3_A_C29_C30AAAAA00920.31 AA00
1252kx5-m4_A_C29_C30AAAAA00950.30 AA00
1262kx5-m5_A_C29_C30AAAAA00960.31 AA00
1272kx5-m6_A_C29_C30AAAAA00930.29 AA00
1282kx5-m7_A_C29_C30AAAAA00930.31 AA00
1292kx5-m8_A_C29_C30AAAAA00900.31 AA00
1302kx5-m9_A_C29_C30AAAAA00930.31 AA00
1312kx5-m10_A_C30_U31AAAAA00920.33 AA00
1322kx5-m1_A_C30_U31AAAAA00970.33 AA00
1332kx5-m2_A_C30_U31AAAAA00950.33 AA00
1342kx5-m3_A_C30_U31AAAAA00970.33 AA00
1352kx5-m4_A_C30_U31AAAAA00950.33 AA00
1362kx5-m5_A_C30_U31AAAAA00950.33 AA00
1372kx5-m6_A_C30_U31AAAAA00960.32 AA00
1382kx5-m7_A_C30_U31AAAAA00940.33 AA00
1392kx5-m8_A_C30_U31AAAAA00960.33 AA00
1402kx5-m9_A_C30_U31AAAAA00960.33 AA00
1412kx5-m10_A_U31_G32A-BAB05590.47 AB05
1422kx5-m1_A_U31_G32A-BAB05530.51 AB05
1432kx5-m2_A_U31_G32A-BAB05600.47 AB05
1442kx5-m3_A_U31_G32A-BAB05580.48 AB05
1452kx5-m4_A_U31_G32A-BAB05540.50 AB05
1462kx5-m5_A_U31_G32A-BAB05550.52 AB05
1472kx5-m6_A_U31_G32A-BAB05530.50 AB05
1482kx5-m7_A_U31_G32A-BAB05600.47 AB05
1492kx5-m8_A_U31_G32A-BAB05590.48 AB05
1502kx5-m9_A_U31_G32A-BAB05570.48 AB05
1512kx5-m10_A_G32_G33NANNANT01.70 OP17
1522kx5-m1_A_G32_G33NANNANT01.75 OP17
1532kx5-m2_A_G32_G33NANNANT01.77 OP17
1542kx5-m3_A_G32_G33NANNANT01.74 OP17
1552kx5-m4_A_G32_G33NANNANT01.74 OP17
1562kx5-m5_A_G32_G33NANNANT01.72 OP17
1572kx5-m6_A_G32_G33NANNANT01.70 OP17
1582kx5-m7_A_G32_G33NANNANT01.71 OP17
1592kx5-m8_A_G32_G33NANNANT01.70 OP17
1602kx5-m9_A_G32_G33NANNANT01.74 OP17
1612kx5-m10_A_G33_G34A-BAB04360.69 AB04
1622kx5-m1_A_G33_G34NANNANT00.55 AB04
1632kx5-m2_A_G33_G34A-BAB04490.60 AB04
1642kx5-m3_A_G33_G34A-BAB04400.67 AB04
1652kx5-m4_A_G33_G34NANNANT00.58 AB04
1662kx5-m5_A_G33_G34NANNANT00.65 IC06
1672kx5-m6_A_G33_G34NANNANT00.58 AB04
1682kx5-m7_A_G33_G34ICLIC02200.57 IC02
1692kx5-m8_A_G33_G34A-BAB04340.70 AB04
1702kx5-m9_A_G33_G34ICLIC02230.54 IC02
1712kx5-m10_A_G34_A35BBwBB16670.49 BB16
1722kx5-m1_A_G34_A35NANNANT00.55 BB16
1732kx5-m2_A_G34_A35BBwBB16400.54 BB16
1742kx5-m3_A_G34_A35BBwBB16610.51 BB16
1752kx5-m4_A_G34_A35NANNANT00.57 BB16
1762kx5-m5_A_G34_A35BBwBB16630.49 BB16
1772kx5-m6_A_G34_A35BBwBB16560.50 BB16
1782kx5-m7_A_G34_A35BBwBB16610.52 BB16
1792kx5-m8_A_G34_A35BBwBB16770.45 BB16
1802kx5-m9_A_G34_A35BBwBB16310.60 BB16
1812kx5-m10_A_A35_G36OPNOP12740.38 OP12
1822kx5-m1_A_A35_G36OPNOP12710.40 OP12
1832kx5-m2_A_A35_G36OPNOP12730.39 OP12
1842kx5-m3_A_A35_G36OPNOP12710.40 OP12
1852kx5-m4_A_A35_G36NANNANT00.46 OP12
1862kx5-m5_A_A35_G36OPNOP12580.41 OP12
1872kx5-m6_A_A35_G36OPNOP12680.39 OP12
1882kx5-m7_A_A35_G36OPNOP12720.43 OP12
1892kx5-m8_A_A35_G36OPNOP12720.40 OP12
1902kx5-m9_A_A35_G36OPNOP12730.39 OP12
1912kx5-m10_A_G36_C37AAAAA00980.18 AA00
1922kx5-m1_A_G36_C37AAAAA00980.17 AA00
1932kx5-m2_A_G36_C37AAAAA00950.19 AA00
1942kx5-m3_A_G36_C37AAAAA00970.19 AA00
1952kx5-m4_A_G36_C37AAAAA00960.16 AA00
1962kx5-m5_A_G36_C37AAAAA00950.17 AA00
1972kx5-m6_A_G36_C37AAAAA00980.17 AA00
1982kx5-m7_A_G36_C37AAAAA00960.16 AA00
1992kx5-m8_A_G36_C37AAAAA00990.17 AA00
2002kx5-m9_A_G36_C37AAAAA00960.20 AA00
2012kx5-m10_A_C37_U38AAAAA00940.23 AA00
2022kx5-m1_A_C37_U38AAAAA00950.21 AA00
2032kx5-m2_A_C37_U38AAAAA00930.23 AA00
2042kx5-m3_A_C37_U38AAAAA00940.21 AA00
2052kx5-m4_A_C37_U38AAAAA00940.22 AA00
2062kx5-m5_A_C37_U38AAAAA00950.22 AA00
2072kx5-m6_A_C37_U38AAAAA00940.22 AA00
2082kx5-m7_A_C37_U38AAAAA00950.20 AA00
2092kx5-m8_A_C37_U38AAAAA00940.21 AA00
2102kx5-m9_A_C37_U38AAAAA00930.23 AA00
2112kx5-m10_A_U38_C39AAAAA00710.35 AA00
2122kx5-m1_A_U38_C39AAAAA00720.33 AA00
2132kx5-m2_A_U38_C39AAAAA00730.33 AA00
2142kx5-m3_A_U38_C39AAAAA00720.31 AA00
2152kx5-m4_A_U38_C39AAAAA00700.35 AA00
2162kx5-m5_A_U38_C39AAAAA00770.30 AA00
2172kx5-m6_A_U38_C39AAAAA00710.34 AA00
2182kx5-m7_A_U38_C39AAAAA00720.32 AA00
2192kx5-m8_A_U38_C39AAAAA00710.34 AA00
2202kx5-m9_A_U38_C39AAAAA00690.33 AA00
2212kx5-m10_A_C39_U40AAAAA00720.32 AA00
2222kx5-m1_A_C39_U40AAAAA00890.28 AA00
2232kx5-m2_A_C39_U40AAAAA00860.29 AA00
2242kx5-m3_A_C39_U40AAAAA00870.28 AA00
2252kx5-m4_A_C39_U40AAAAA00850.30 AA00
2262kx5-m5_A_C39_U40AAAAA00900.28 AA00
2272kx5-m6_A_C39_U40AAAAA00870.28 AA00
2282kx5-m7_A_C39_U40AAAAA00900.27 AA00
2292kx5-m8_A_C39_U40AAAAA00870.28 AA00
2302kx5-m9_A_C39_U40AAAAA00850.29 AA00
2312kx5-m10_A_U40_C41AAAAA00970.16 AA00
2322kx5-m1_A_U40_C41AAAAA00970.17 AA00
2332kx5-m2_A_U40_C41AAAAA00960.17 AA00
2342kx5-m3_A_U40_C41AAAAA00950.18 AA00
2352kx5-m4_A_U40_C41AAAAA00970.17 AA00
2362kx5-m5_A_U40_C41AAAAA00960.19 AA00
2372kx5-m6_A_U40_C41AAAAA00970.17 AA00
2382kx5-m7_A_U40_C41AAAAA00960.18 AA00
2392kx5-m8_A_U40_C41AAAAA00960.17 AA00
2402kx5-m9_A_U40_C41AAAAA00950.18 AA00
2412kx5-m10_A_C41_U42AAAAA00960.20 AA00
2422kx5-m1_A_C41_U42AAAAA00960.21 AA00
2432kx5-m2_A_C41_U42AAAAA00950.19 AA00
2442kx5-m3_A_C41_U42AAAAA00950.20 AA00
2452kx5-m4_A_C41_U42AAAAA00960.21 AA00
2462kx5-m5_A_C41_U42AAAAA00950.23 AA00
2472kx5-m6_A_C41_U42AAAAA00960.21 AA00
2482kx5-m7_A_C41_U42AAAAA00950.21 AA00
2492kx5-m8_A_C41_U42AAAAA00950.22 AA00
2502kx5-m9_A_C41_U42AAAAA00950.22 AA00
2512kx5-m10_A_U42_G43AAAAA00960.23 AA00
2522kx5-m1_A_U42_G43AAAAA00980.21 AA00
2532kx5-m2_A_U42_G43AAAAA00850.29 AA00
2542kx5-m3_A_U42_G43AAAAA00980.19 AA00
2552kx5-m4_A_U42_G43AAAAA00980.21 AA00
2562kx5-m5_A_U42_G43AAAAA00920.28 AA00
2572kx5-m6_A_U42_G43AAAAA00980.21 AA00
2582kx5-m7_A_U42_G43AAAAA00980.22 AA00
2592kx5-m8_A_U42_G43AAAAA00970.23 AA00
2602kx5-m9_A_U42_G43AAAAA00980.20 AA00
2612kx5-m10_A_G43_C44AAAAA00980.26 AA00
2622kx5-m1_A_G43_C44AAAAA00960.24 AA00
2632kx5-m2_A_G43_C44AAAAA00960.28 AA00
2642kx5-m3_A_G43_C44AAAAA00950.23 AA00
2652kx5-m4_A_G43_C44AAAAA00970.24 AA00
2662kx5-m5_A_G43_C44AAAAA00980.29 AA00
2672kx5-m6_A_G43_C44AAAAA00960.23 AA00
2682kx5-m7_A_G43_C44AAAAA00970.25 AA00
2692kx5-m8_A_G43_C44AAAAA00960.25 AA00
2702kx5-m9_A_G43_C44AAAAA00960.24 AA00
2712kx5-m10_A_C44_C45AAAAA00930.30 AA00
2722kx5-m1_A_C44_C45AAAAA00920.30 AA00
2732kx5-m2_A_C44_C45AAAAA00910.30 AA00
2742kx5-m3_A_C44_C45AAAAA00940.29 AA00
2752kx5-m4_A_C44_C45AAAAA00920.30 AA00
2762kx5-m5_A_C44_C45AAAAA00920.30 AA00
2772kx5-m6_A_C44_C45AAAAA00930.29 AA00
2782kx5-m7_A_C44_C45AAAAA00930.30 AA00
2792kx5-m8_A_C44_C45AAAAA00920.30 AA00
2802kx5-m9_A_C44_C45AAAAA00910.31 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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