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Conformers: ABBIImiBZICOPNSYNN
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OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ktq_B_DG101_DA102BBBBB00700.29 BB00
022ktq_B_DA102_DC103BBBBB00800.20 BB00
032ktq_B_DC103_DC104BBBBB00740.38 BB00
042ktq_B_DC104_DA105BBBBB00850.30 BB00
052ktq_B_DA105_DC106BBBBB00780.21 BB00
062ktq_B_DC106_DG107BBBBB00810.24 BB00
072ktq_B_DG107_DG108BBBBB00630.27 BB00
082ktq_B_DG108_DC109BBBBB00830.16 BB00
092ktq_B_DC109_DG110B-ABA08840.28 BA08
102ktq_B_DG110_DC111AAAAA00880.15 AA00
112ktq_D_DG204_DG205NANNANT00.87 AA12
122ktq_D_DG205_DG206AAAAA00530.26 AA00
132ktq_D_DG206_DC207AAwAA01800.20 AA01
142ktq_D_DC207_DG208A-BAB05630.26 AB05
152ktq_D_DG208_DC209BBBBB00850.24 BB00
162ktq_D_DC209_DC210BBBBB00730.24 BB00
172ktq_D_DC210_DG211BBwBB11550.25 BB11
182ktq_D_DG211_DT212BBBBB00570.25 BB00
192ktq_D_DT212_DG213BBwBB02850.30 BB02
202ktq_D_DG213_DG214BBBBB00520.32 BB00
212ktq_D_DG214_DT215BBwBB02620.38 BB02
222ktq_D_DT215_DC216BBwBB03860.22 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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