Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of the Human Mitochondrial tRNAMet

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012krz-m10_A_C2_G3AAAAA00470.21 AA00
0022krz-m1_A_C2_G3AAAAA00440.17 AA00
0032krz-m2_A_C2_G3AAAAA08780.21 AA08
0042krz-m3_A_C2_G3AAAAA00480.19 AA00
0052krz-m4_A_C2_G3AAAAA00450.24 AA00
0062krz-m5_A_C2_G3AAAAA08130.59 AA08
0072krz-m6_A_C2_G3AAAAA00350.35 AA00
0082krz-m7_A_C2_G3AAAAA00190.38 AA00
0092krz-m8_A_C2_G3AAAAA00250.38 AA00
0102krz-m9_A_C2_G3AAAAA00480.28 AA00
0112krz-m10_A_G3_G4AAAAA00380.29 AA00
0122krz-m1_A_G3_G4AAAAA00690.22 AA00
0132krz-m2_A_G3_G4AAAAA00430.31 AA00
0142krz-m3_A_G3_G4AAAAA08540.23 AA08
0152krz-m4_A_G3_G4AAAAA08460.26 AA08
0162krz-m5_A_G3_G4AAAAA04600.39 AA04
0172krz-m6_A_G3_G4AAAAA08440.41 AA08
0182krz-m7_A_G3_G4AAAAA00330.36 AA00
0192krz-m8_A_G3_G4AAAAA00520.23 AA00
0202krz-m9_A_G3_G4AAAAA04800.26 AA04
0212krz-m10_A_G4_G5AAAAA00780.23 AA00
0222krz-m1_A_G4_G5AAAAA08810.20 AA08
0232krz-m2_A_G4_G5AAAAA04840.21 AA04
0242krz-m3_A_G4_G5AAAAA00490.29 AA00
0252krz-m4_A_G4_G5AAAAA04770.29 AA04
0262krz-m5_A_G4_G5AAAAA08800.23 AA08
0272krz-m6_A_G4_G5AAAAA04850.24 AA04
0282krz-m7_A_G4_G5AAAAA00490.32 AA00
0292krz-m8_A_G4_G5AAAAA00310.29 AA00
0302krz-m9_A_G4_G5AAAAA00490.25 AA00
0312krz-m10_A_G5_C6AAAAA00350.42 AA00
0322krz-m1_A_G5_C6AAAAA00530.38 AA00
0332krz-m2_A_G5_C6AAAAA00110.48 AA00
0342krz-m3_A_G5_C6AAAAA00340.39 AA00
0352krz-m4_A_G5_C6AAAAA0080.44 AA00
0362krz-m5_A_G5_C6AAAAA00550.41 AA00
0372krz-m6_A_G5_C6NANNANT00.59 AA04
0382krz-m7_A_G5_C6AAAAA00360.37 AA00
0392krz-m8_A_G5_C6AAAAA00330.41 AA00
0402krz-m9_A_G5_C6AAAAA00140.46 AA00
0412krz-m10_A_C6_C7AAAAA04140.72 AA04
0422krz-m1_A_C6_C7NANNANT00.79 AA00
0432krz-m2_A_C6_C7NANNANT00.77 AA04
0442krz-m3_A_C6_C7NANNANT00.72 AA08
0452krz-m4_A_C6_C7NANNANT00.68 AA08
0462krz-m5_A_C6_C7NANNANT00.83 AA00
0472krz-m6_A_C6_C7AAAAA08840.32 AA08
0482krz-m7_A_C6_C7NANNANT00.74 AA04
0492krz-m8_A_C6_C7NANNANT00.78 AA00
0502krz-m9_A_C6_C7AAAAA08820.36 AA08
0512krz-m10_A_C7_C8NANNANT00.78 OP04
0522krz-m1_A_C7_C8NANNANT00.83 OP04
0532krz-m2_A_C7_C8NANNANT00.86 OP04
0542krz-m3_A_C7_C8NANNANT00.80 OP04
0552krz-m4_A_C7_C8NANNANT00.86 OP04
0562krz-m5_A_C7_C8NANNANT00.81 OP04
0572krz-m6_A_C7_C8NANNANT00.87 OP04
0582krz-m7_A_C7_C8NANNANT00.82 OP04
0592krz-m8_A_C7_C8NANNANT00.85 OP04
0602krz-m9_A_C7_C8NANNANT00.85 OP04
0612krz-m10_A_C8_A9AAAAA02140.54 AA02
0622krz-m1_A_C8_A9AAAAA02280.49 AA02
0632krz-m2_A_C8_A9AAAAA0090.47 AA00
0642krz-m3_A_C8_A9AAAAA0080.47 AA00
0652krz-m4_A_C8_A9AAAAA02220.52 AA02
0662krz-m5_A_C8_A9AAAAA02200.52 AA02
0672krz-m6_A_C8_A9AAAAA0070.53 AA00
0682krz-m7_A_C8_A9AAAAA02260.52 AA02
0692krz-m8_A_C8_A9AAAAA02240.51 AA02
0702krz-m9_A_C8_A9AAAAA09340.42 AA09
0712krz-m10_A_A9_U10NANNANT01.17 OP09
0722krz-m1_A_A9_U10NANNANT00.91 OP03
0732krz-m2_A_A9_U10NANNANT01.19 OP09
0742krz-m3_A_A9_U10NANNANT00.88 OP03
0752krz-m4_A_A9_U10NANNANT01.13 OP09
0762krz-m5_A_A9_U10NANNANT01.11 OP09
0772krz-m6_A_A9_U10NANNANT01.15 OP09
0782krz-m7_A_A9_U10NANNANT01.20 OP09
0792krz-m8_A_A9_U10NANNANT01.14 OP09
0802krz-m9_A_A9_U10NANNANT01.16 OP09
0812krz-m10_A_U10_A11NANNANT00.67 OP11
0822krz-m1_A_U10_A11OPNOP11110.66 OP11
0832krz-m2_A_U10_A11NANNANT00.66 OP11
0842krz-m3_A_U10_A11NANNANT00.67 OP11
0852krz-m4_A_U10_A11OPNOP11120.60 OP11
0862krz-m5_A_U10_A11OPNOP11160.62 OP11
0872krz-m6_A_U10_A11NANNANT00.65 OP11
0882krz-m7_A_U10_A11OPNOP11110.63 OP11
0892krz-m8_A_U10_A11OPNOP11160.61 OP11
0902krz-m9_A_U10_A11NANNANT00.69 OP11
0912krz-m10_A_A11_C12AAAAA0080.63 AA00
0922krz-m1_A_A11_C12AAAAA0080.66 AA00
0932krz-m2_A_A11_C12NANNANT00.65 AA00
0942krz-m3_A_A11_C12AAAAA00100.59 AA00
0952krz-m4_A_A11_C12AAAAA0080.65 AA00
0962krz-m5_A_A11_C12AAAAA0090.63 AA00
0972krz-m6_A_A11_C12AAAAA04200.69 AA04
0982krz-m7_A_A11_C12AAAAA00130.57 AA00
0992krz-m8_A_A11_C12AAAAA0090.62 AA00
1002krz-m9_A_A11_C12AAAAA0050.66 AA00
1012krz-m10_A_C12_C13AAAAA08530.47 AA08
1022krz-m1_A_C12_C13AAAAA08760.34 AA08
1032krz-m2_A_C12_C13AAAAA00160.45 AA00
1042krz-m3_A_C12_C13AAAAA08270.54 AA08
1052krz-m4_A_C12_C13AAAAA00530.32 AA00
1062krz-m5_A_C12_C13AAAAA00610.30 AA00
1072krz-m6_A_C12_C13AAAAA08670.41 AA08
1082krz-m7_A_C12_C13AAAAA08170.56 AA08
1092krz-m8_A_C12_C13AAAAA00360.39 AA00
1102krz-m9_A_C12_C13AAAAA08130.54 AA08
1112krz-m10_A_C13_C14AAAAA00700.24 AA00
1122krz-m1_A_C13_C14AAAAA08760.25 AA08
1132krz-m2_A_C13_C14AAAAA08800.20 AA08
1142krz-m3_A_C13_C14AAAAA00540.29 AA00
1152krz-m4_A_C13_C14AAAAA08150.39 AA08
1162krz-m5_A_C13_C14AAAAA08430.38 AA08
1172krz-m6_A_C13_C14AAAAA00730.22 AA00
1182krz-m7_A_C13_C14AAAAA08800.26 AA08
1192krz-m8_A_C13_C14AAAAA08680.22 AA08
1202krz-m9_A_C13_C14AAAAA08920.19 AA08
1212krz-m10_A_C14_C15AAAAA08660.32 AA08
1222krz-m1_A_C14_C15AAAAA08850.21 AA08
1232krz-m2_A_C14_C15AAAAA08780.21 AA08
1242krz-m3_A_C14_C15AAAAA08580.37 AA08
1252krz-m4_A_C14_C15AAAAA08890.19 AA08
1262krz-m5_A_C14_C15AAAAA08780.30 AA08
1272krz-m6_A_C14_C15AAAAA08560.38 AA08
1282krz-m7_A_C14_C15AAAAA08600.37 AA08
1292krz-m8_A_C14_C15AAAAA08910.19 AA08
1302krz-m9_A_C14_C15AAAAA08900.20 AA08
1312krz-m10_A_C15_G16AAAAA00710.27 AA00
1322krz-m1_A_C15_G16AAAAA00470.27 AA00
1332krz-m2_A_C15_G16AAAAA08770.21 AA08
1342krz-m3_A_C15_G16AAAAA00730.20 AA00
1352krz-m4_A_C15_G16AAAAA08750.20 AA08
1362krz-m5_A_C15_G16AAAAA08720.20 AA08
1372krz-m6_A_C15_G16AAAAA00740.24 AA00
1382krz-m7_A_C15_G16AAAAA00490.33 AA00
1392krz-m8_A_C15_G16AAAAA00750.30 AA00
1402krz-m9_A_C15_G16AAAAA08310.43 AA08
1412krz-m10_A_G16_A17AAAAA00470.29 AA00
1422krz-m1_A_G16_A17AAAAA00600.33 AA00
1432krz-m2_A_G16_A17AAAAA00650.25 AA00
1442krz-m3_A_G16_A17AAAAA00420.30 AA00
1452krz-m4_A_G16_A17AAAAA00620.25 AA00
1462krz-m5_A_G16_A17AAAAA00130.39 AA00
1472krz-m6_A_G16_A17AAAAA00470.36 AA00
1482krz-m7_A_G16_A17AAAAA00170.36 AA00
1492krz-m8_A_G16_A17AAuAA12740.21 AA12
1502krz-m9_A_G16_A17AAAAA00330.29 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N