DNATCO v4.1: results

Solution structure of the E. coli tRNA-Arg1 (ICG) ASL containing the 2-thiocytidine modification

Results of the assignment of 120 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2krv-m10_A_C1_U2	AAA	AA00	30	0.35	AA00
002	2krv-m1_A_C1_U2	AAA	AA00	72	0.13	AA00
003	2krv-m2_A_C1_U2	AAA	AA00	48	0.39	AA00
004	2krv-m3_A_C1_U2	AAA	AA00	51	0.30	AA00
005	2krv-m4_A_C1_U2	AAA	AA00	57	0.18	AA00
006	2krv-m5_A_C1_U2	AAA	AA00	32	0.45	AA00
007	2krv-m6_A_C1_U2	AAA	AA00	60	0.29	AA00
008	2krv-m7_A_C1_U2	AAA	AA00	61	0.24	AA00
009	2krv-m8_A_C1_U2	AAA	AA00	70	0.20	AA00
010	2krv-m9_A_C1_U2	AAA	AA00	64	0.15	AA00
011	2krv-m10_A_U2_C3	AAA	AA00	53	0.32	AA00
012	2krv-m1_A_U2_C3	AAA	AA00	56	0.27	AA00
013	2krv-m2_A_U2_C3	AAA	AA00	51	0.23	AA00
014	2krv-m3_A_U2_C3	AAA	AA00	56	0.30	AA00
015	2krv-m4_A_U2_C3	AAA	AA00	54	0.21	AA00
016	2krv-m5_A_U2_C3	AAA	AA00	60	0.28	AA00
017	2krv-m6_A_U2_C3	AAA	AA00	58	0.26	AA00
018	2krv-m7_A_U2_C3	AAA	AA00	46	0.32	AA00
019	2krv-m8_A_U2_C3	AAA	AA00	56	0.29	AA00
020	2krv-m9_A_U2_C3	AAA	AA00	51	0.24	AA00
021	2krv-m10_A_C3_G4	AAA	AA00	51	0.31	AA00
022	2krv-m1_A_C3_G4	AAA	AA00	70	0.18	AA00
023	2krv-m2_A_C3_G4	AAA	AA00	21	0.41	AA00
024	2krv-m3_A_C3_G4	AAA	AA00	65	0.24	AA00
025	2krv-m4_A_C3_G4	AAA	AA00	62	0.17	AA00
026	2krv-m5_A_C3_G4	AAA	AA00	38	0.38	AA00
027	2krv-m6_A_C3_G4	AAA	AA00	40	0.38	AA00
028	2krv-m7_A_C3_G4	AAA	AA00	57	0.32	AA00
029	2krv-m8_A_C3_G4	AAA	AA00	73	0.24	AA00
030	2krv-m9_A_C3_G4	AAA	AA00	62	0.17	AA00
031	2krv-m10_A_G4_G5	AAA	AA00	88	0.14	AA00
032	2krv-m1_A_G4_G5	AAA	AA00	33	0.36	AA00
033	2krv-m2_A_G4_G5	AAA	AA00	73	0.22	AA00
034	2krv-m3_A_G4_G5	AAA	AA00	75	0.22	AA00
035	2krv-m4_A_G4_G5	AAA	AA00	66	0.23	AA00
036	2krv-m5_A_G4_G5	AAA	AA00	78	0.26	AA00
037	2krv-m6_A_G4_G5	AAA	AA00	68	0.18	AA00
038	2krv-m7_A_G4_G5	AAA	AA00	71	0.26	AA00
039	2krv-m8_A_G4_G5	AAA	AA00	73	0.21	AA00
040	2krv-m9_A_G4_G5	AAA	AA00	67	0.20	AA00
041	2krv-m10_A_C9_G10	NAN	NANT	0	0.76	ZZ1S
042	2krv-m1_A_C9_G10	NAN	NANT	0	1.26	OP26
043	2krv-m2_A_C9_G10	NAN	NANT	0	1.28	OP26
044	2krv-m3_A_C9_G10	NAN	NANT	0	2.11	OP12
045	2krv-m4_A_C9_G10	NAN	NANT	0	0.58	ZZ1S
046	2krv-m5_A_C9_G10	NAN	NANT	0	1.23	OP26
047	2krv-m6_A_C9_G10	NAN	NANT	0	1.27	OP26
048	2krv-m7_A_C9_G10	NAN	NANT	0	2.15	OP12
049	2krv-m8_A_C9_G10	NAN	NANT	0	0.61	ZZ1S
050	2krv-m9_A_C9_G10	NAN	NANT	0	2.15	OP12
051	2krv-m10_A_G10_A11	NAN	NANT	0	0.98	AA06
052	2krv-m1_A_G10_A11	NAN	NANT	0	0.96	AA11
053	2krv-m2_A_G10_A11	NAN	NANT	0	1.02	AA11
054	2krv-m3_A_G10_A11	NAN	NANT	0	0.76	AA10
055	2krv-m4_A_G10_A11	NAN	NANT	0	0.81	AA01
056	2krv-m5_A_G10_A11	NAN	NANT	0	0.67	AA10
057	2krv-m6_A_G10_A11	NAN	NANT	0	0.76	AA10
058	2krv-m7_A_G10_A11	NAN	NANT	0	0.80	AA10
059	2krv-m8_A_G10_A11	NAN	NANT	0	0.94	AA06
060	2krv-m9_A_G10_A11	NAN	NANT	0	0.78	AA01
061	2krv-m10_A_A11_A12	NAN	NANT	0	1.46	OP24
062	2krv-m1_A_A11_A12	NAN	NANT	0	1.29	OP24
063	2krv-m2_A_A11_A12	NAN	NANT	0	1.39	OP24
064	2krv-m3_A_A11_A12	NAN	NANT	0	1.24	OP24
065	2krv-m4_A_A11_A12	NAN	NANT	0	1.28	OP24
066	2krv-m5_A_A11_A12	NAN	NANT	0	1.29	OP24
067	2krv-m6_A_A11_A12	NAN	NANT	0	1.40	OP24
068	2krv-m7_A_A11_A12	NAN	NANT	0	1.22	OP24
069	2krv-m8_A_A11_A12	NAN	NANT	0	1.44	OP24
070	2krv-m9_A_A11_A12	NAN	NANT	0	1.22	OP24
071	2krv-m10_A_A12_C13	AAA	AA00	67	0.24	AA00
072	2krv-m1_A_A12_C13	AAA	AA00	66	0.27	AA00
073	2krv-m2_A_A12_C13	AAA	AA00	71	0.29	AA00
074	2krv-m3_A_A12_C13	AAA	AA00	57	0.21	AA00
075	2krv-m4_A_A12_C13	AAA	AA00	64	0.27	AA00
076	2krv-m5_A_A12_C13	AAA	AA00	72	0.23	AA00
077	2krv-m6_A_A12_C13	AAA	AA00	54	0.24	AA00
078	2krv-m7_A_A12_C13	AAA	AA00	39	0.36	AA00
079	2krv-m8_A_A12_C13	AAA	AA00	65	0.29	AA00
080	2krv-m9_A_A12_C13	AAA	AA00	50	0.29	AA00
081	2krv-m10_A_C13_C14	AAA	AA00	67	0.17	AA00
082	2krv-m1_A_C13_C14	AAA	AA00	62	0.28	AA00
083	2krv-m2_A_C13_C14	AAA	AA00	68	0.18	AA00
084	2krv-m3_A_C13_C14	AAA	AA00	70	0.23	AA00
085	2krv-m4_A_C13_C14	AAA	AA00	72	0.16	AA00
086	2krv-m5_A_C13_C14	AAA	AA00	71	0.17	AA00
087	2krv-m6_A_C13_C14	AAA	AA00	61	0.26	AA00
088	2krv-m7_A_C13_C14	AAA	AA00	68	0.24	AA00
089	2krv-m8_A_C13_C14	AAA	AA00	69	0.22	AA00
090	2krv-m9_A_C13_C14	AAA	AA00	71	0.21	AA00
091	2krv-m10_A_C14_G15	AAA	AA00	66	0.21	AA00
092	2krv-m1_A_C14_G15	AAA	AA00	54	0.27	AA00
093	2krv-m2_A_C14_G15	AAA	AA00	54	0.30	AA00
094	2krv-m3_A_C14_G15	AAA	AA00	72	0.23	AA00
095	2krv-m4_A_C14_G15	AAA	AA00	65	0.20	AA00
096	2krv-m5_A_C14_G15	AAA	AA00	42	0.35	AA00
097	2krv-m6_A_C14_G15	AAA	AA00	60	0.33	AA00
098	2krv-m7_A_C14_G15	AAA	AA00	50	0.31	AA00
099	2krv-m8_A_C14_G15	AAA	AA00	77	0.25	AA00
100	2krv-m9_A_C14_G15	AAA	AA00	62	0.29	AA00
101	2krv-m10_A_G15_A16	AAA	AA00	48	0.35	AA00
102	2krv-m1_A_G15_A16	AAA	AA00	66	0.19	AA00
103	2krv-m2_A_G15_A16	AAA	AA00	70	0.17	AA00
104	2krv-m3_A_G15_A16	AAA	AA08	77	0.20	AA08
105	2krv-m4_A_G15_A16	AAA	AA00	73	0.23	AA00
106	2krv-m5_A_G15_A16	AAA	AA00	31	0.34	AA00
107	2krv-m6_A_G15_A16	AAA	AA00	69	0.21	AA00
108	2krv-m7_A_G15_A16	AAA	AA00	73	0.22	AA00
109	2krv-m8_A_G15_A16	AAA	AA00	35	0.30	AA00
110	2krv-m9_A_G15_A16	AAA	AA00	58	0.19	AA00
111	2krv-m10_A_A16_G17	AAA	AA00	49	0.29	AA00
112	2krv-m1_A_A16_G17	AAA	AA00	58	0.26	AA00
113	2krv-m2_A_A16_G17	A-B	AB05	47	0.34	AB05
114	2krv-m3_A_A16_G17	AAA	AA00	56	0.27	AA00
115	2krv-m4_A_A16_G17	A-B	AB05	50	0.37	AB05
116	2krv-m5_A_A16_G17	AAA	AA00	78	0.28	AA00
117	2krv-m6_A_A16_G17	AAA	AA00	88	0.20	AA00
118	2krv-m7_A_A16_G17	A-B	AB05	48	0.32	AB05
119	2krv-m8_A_A16_G17	AAA	AA00	55	0.28	AA00
120	2krv-m9_A_A16_G17	AAA	AA00	43	0.31	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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IC

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Z

N

Results of the assignment of 120 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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