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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of the tRNA-Arg2 (ICG) ASL.

Results of the assignment of 140 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012krq-m10_A_C1_U2AAAAA00440.34 AA00
0022krq-m1_A_C1_U2AAAAA00260.45 AA00
0032krq-m2_A_C1_U2AAAAA00590.14 AA00
0042krq-m3_A_C1_U2AAAAA09750.24 AA09
0052krq-m4_A_C1_U2AAAAA00460.18 AA00
0062krq-m5_A_C1_U2AAAAA00660.19 AA00
0072krq-m6_A_C1_U2AAAAA00400.29 AA00
0082krq-m7_A_C1_U2AAAAA00730.25 AA00
0092krq-m8_A_C1_U2AAAAA00900.16 AA00
0102krq-m9_A_C1_U2AAAAA00470.17 AA00
0112krq-m10_A_U2_C3AAAAA09540.33 AA09
0122krq-m1_A_U2_C3AAAAA00410.22 AA00
0132krq-m2_A_U2_C3AAAAA09610.32 AA09
0142krq-m3_A_U2_C3AAAAA09720.27 AA09
0152krq-m4_A_U2_C3AAAAA00370.30 AA00
0162krq-m5_A_U2_C3AAAAA09510.32 AA09
0172krq-m6_A_U2_C3AAAAA00460.30 AA00
0182krq-m7_A_U2_C3AAAAA00410.34 AA00
0192krq-m8_A_U2_C3AAAAA00450.31 AA00
0202krq-m9_A_U2_C3AAAAA09730.26 AA09
0212krq-m10_A_C3_G4AAAAA00490.19 AA00
0222krq-m1_A_C3_G4AAAAA08460.25 AA08
0232krq-m2_A_C3_G4AAAAA00340.25 AA00
0242krq-m3_A_C3_G4AAAAA00340.21 AA00
0252krq-m4_A_C3_G4AAAAA03430.29 AA03
0262krq-m5_A_C3_G4AAAAA00180.37 AA00
0272krq-m6_A_C3_G4AAAAA00180.39 AA00
0282krq-m7_A_C3_G4AAAAA00190.36 AA00
0292krq-m8_A_C3_G4AAAAA00190.36 AA00
0302krq-m9_A_C3_G4AAAAA00370.20 AA00
0312krq-m10_A_G4_G5AAAAA00460.32 AA00
0322krq-m1_A_G4_G5AAAAA00390.33 AA00
0332krq-m2_A_G4_G5AAAAA00540.27 AA00
0342krq-m3_A_G4_G5AAAAA08610.23 AA08
0352krq-m4_A_G4_G5AAAAA00630.27 AA00
0362krq-m5_A_G4_G5AAAAA00370.28 AA00
0372krq-m6_A_G4_G5AAAAA00510.30 AA00
0382krq-m7_A_G4_G5AAAAA00470.27 AA00
0392krq-m8_A_G4_G5AAAAA00490.30 AA00
0402krq-m9_A_G4_G5AAAAA00510.25 AA00
0412krq-m10_A_G5_C6AAAAA00310.39 AA00
0422krq-m1_A_G5_C6AAAAA00430.26 AA00
0432krq-m2_A_G5_C6AAAAA00570.36 AA00
0442krq-m3_A_G5_C6AAAAA00730.18 AA00
0452krq-m4_A_G5_C6AAAAA00550.33 AA00
0462krq-m5_A_G5_C6NANNANT00.48 AA04
0472krq-m6_A_G5_C6AAAAA08690.22 AA08
0482krq-m7_A_G5_C6AAAAA00650.21 AA00
0492krq-m8_A_G5_C6AAAAA00560.26 AA00
0502krq-m9_A_G5_C6AAAAA00610.24 AA00
0512krq-m10_A_C6_U7AAwAA01260.18 AA01
0522krq-m1_A_C6_U7AAAAA00570.35 AA00
0532krq-m2_A_C6_U7NANNANT00.59 AA11
0542krq-m3_A_C6_U7AAAAA00470.37 AA00
0552krq-m4_A_C6_U7AAAAA00440.41 AA00
0562krq-m5_A_C6_U7AAAAA04750.34 AA04
0572krq-m6_A_C6_U7AAAAA00640.32 AA00
0582krq-m7_A_C6_U7AAAAA00620.29 AA00
0592krq-m8_A_C6_U7NANNANT00.51 AA06
0602krq-m9_A_C6_U7AAAAA00620.29 AA00
0612krq-m10_A_C9_G10NANNANT01.30 OP26
0622krq-m1_A_C9_G10NANNANT01.20 OP26
0632krq-m2_A_C9_G10NANNANT01.31 OP26
0642krq-m3_A_C9_G10NANNANT01.24 OP26
0652krq-m4_A_C9_G10NANNANT01.76 AA03
0662krq-m5_A_C9_G10NANNANT01.28 OP26
0672krq-m6_A_C9_G10NANNANT01.27 OP26
0682krq-m7_A_C9_G10NANNANT01.25 OP26
0692krq-m8_A_C9_G10NANNANT01.68 AA03
0702krq-m9_A_C9_G10NANNANT01.24 OP26
0712krq-m10_A_G10_A11NANNANT01.03 AA06
0722krq-m1_A_G10_A11NANNANT01.18 AA11
0732krq-m2_A_G10_A11NANNANT00.73 AA10
0742krq-m3_A_G10_A11NANNANT00.80 AA10
0752krq-m4_A_G10_A11NANNANT00.84 AA01
0762krq-m5_A_G10_A11NANNANT01.11 AA11
0772krq-m6_A_G10_A11NANNANT01.19 AA11
0782krq-m7_A_G10_A11NANNANT01.03 AA11
0792krq-m8_A_G10_A11NANNANT00.82 AA06
0802krq-m9_A_G10_A11NANNANT01.11 AA11
0812krq-m10_A_A11_A12NANNANT00.69 OP26
0822krq-m1_A_A11_A12NANNANT01.52 OP24
0832krq-m2_A_A11_A12NANNANT01.30 OP24
0842krq-m3_A_A11_A12NANNANT01.52 OP24
0852krq-m4_A_A11_A12NANNANT01.43 OP24
0862krq-m5_A_A11_A12NANNANT01.34 OP24
0872krq-m6_A_A11_A12NANNANT01.44 OP24
0882krq-m7_A_A11_A12NANNANT01.38 OP24
0892krq-m8_A_A11_A12NANNANT01.34 OP24
0902krq-m9_A_A11_A12NANNANT01.54 OP24
0912krq-m10_A_A12_C13AAAAA00500.18 AA00
0922krq-m1_A_A12_C13AAAAA00660.31 AA00
0932krq-m2_A_A12_C13AAAAA08420.34 AA08
0942krq-m3_A_A12_C13AAAAA00620.33 AA00
0952krq-m4_A_A12_C13AAAAA00540.35 AA00
0962krq-m5_A_A12_C13AAAAA00520.32 AA00
0972krq-m6_A_A12_C13AAAAA00540.29 AA00
0982krq-m7_A_A12_C13AAAAA08360.34 AA08
0992krq-m8_A_A12_C13AAAAA08530.30 AA08
1002krq-m9_A_A12_C13AAAAA00690.29 AA00
1012krq-m10_A_C13_C14AAAAA00540.16 AA00
1022krq-m1_A_C13_C14AAAAA00540.26 AA00
1032krq-m2_A_C13_C14AAAAA08880.21 AA08
1042krq-m3_A_C13_C14AAAAA08790.23 AA08
1052krq-m4_A_C13_C14AAAAA00620.18 AA00
1062krq-m5_A_C13_C14AAAAA08820.23 AA08
1072krq-m6_A_C13_C14AAAAA08840.18 AA08
1082krq-m7_A_C13_C14AAAAA00640.14 AA00
1092krq-m8_A_C13_C14AAAAA00550.18 AA00
1102krq-m9_A_C13_C14AAAAA00560.12 AA00
1112krq-m10_A_C14_G15AAAAA08800.21 AA08
1122krq-m1_A_C14_G15AAAAA08900.16 AA08
1132krq-m2_A_C14_G15AAAAA08770.25 AA08
1142krq-m3_A_C14_G15AAAAA08890.16 AA08
1152krq-m4_A_C14_G15AAAAA08860.18 AA08
1162krq-m5_A_C14_G15AAAAA08780.22 AA08
1172krq-m6_A_C14_G15AAAAA00850.23 AA00
1182krq-m7_A_C14_G15AAAAA00560.22 AA00
1192krq-m8_A_C14_G15AAAAA00650.29 AA00
1202krq-m9_A_C14_G15AAAAA08830.20 AA08
1212krq-m10_A_G15_A16AAAAA00560.32 AA00
1222krq-m1_A_G15_A16AAAAA08810.27 AA08
1232krq-m2_A_G15_A16AAAAA08830.21 AA08
1242krq-m3_A_G15_A16AAAAA08820.24 AA08
1252krq-m4_A_G15_A16AAAAA00370.22 AA00
1262krq-m5_A_G15_A16AAAAA08860.20 AA08
1272krq-m6_A_G15_A16AAAAA08860.20 AA08
1282krq-m7_A_G15_A16AAAAA08810.22 AA08
1292krq-m8_A_G15_A16AAAAA00530.23 AA00
1302krq-m9_A_G15_A16AAAAA08640.28 AA08
1312krq-m10_A_A16_G17AAAAA00350.36 AA00
1322krq-m1_A_A16_G17A-BAB05440.40 AB05
1332krq-m2_A_A16_G17AAAAA00780.20 AA00
1342krq-m3_A_A16_G17A-BAB05360.37 AB05
1352krq-m4_A_A16_G17AAAAA00680.21 AA00
1362krq-m5_A_A16_G17AAAAA00820.19 AA00
1372krq-m6_A_A16_G17AAAAA00750.22 AA00
1382krq-m7_A_A16_G17AAAAA00640.24 AA00
1392krq-m8_A_A16_G17AAAAA00740.20 AA00
1402krq-m9_A_A16_G17AAAAA00380.31 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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