DNATCO v4.1: results

Solution structure of the E. coli tRNA-Arg2(acg) anticodon stem and loop

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2krp-m10_A_C1_U2	AAA	AA00	44	0.30	AA00
002	2krp-m1_A_C1_U2	AAA	AA00	66	0.15	AA00
003	2krp-m2_A_C1_U2	AAA	AA00	55	0.28	AA00
004	2krp-m3_A_C1_U2	AAA	AA08	57	0.29	AA08
005	2krp-m4_A_C1_U2	AAA	AA00	37	0.25	AA00
006	2krp-m5_A_C1_U2	AAA	AA00	68	0.20	AA00
007	2krp-m6_A_C1_U2	AAA	AA00	52	0.29	AA00
008	2krp-m7_A_C1_U2	AAA	AA00	27	0.39	AA00
009	2krp-m8_A_C1_U2	AAA	AA00	82	0.15	AA00
010	2krp-m9_A_C1_U2	AAA	AA00	78	0.17	AA00
011	2krp-m10_A_U2_C3	AAA	AA00	49	0.24	AA00
012	2krp-m1_A_U2_C3	AAA	AA00	36	0.23	AA00
013	2krp-m2_A_U2_C3	AAA	AA00	36	0.38	AA00
014	2krp-m3_A_U2_C3	AAA	AA09	89	0.18	AA09
015	2krp-m4_A_U2_C3	AAA	AA09	77	0.28	AA09
016	2krp-m5_A_U2_C3	AAA	AA00	37	0.33	AA00
017	2krp-m6_A_U2_C3	AAA	AA09	59	0.33	AA09
018	2krp-m7_A_U2_C3	AAA	AA00	51	0.21	AA00
019	2krp-m8_A_U2_C3	AAA	AA00	34	0.35	AA00
020	2krp-m9_A_U2_C3	AAA	AA00	34	0.36	AA00
021	2krp-m10_A_C3_G4	AAA	AA00	40	0.30	AA00
022	2krp-m1_A_C3_G4	AAA	AA09	56	0.29	AA09
023	2krp-m2_A_C3_G4	AAA	AA00	41	0.40	AA00
024	2krp-m3_A_C3_G4	AAA	AA00	36	0.32	AA00
025	2krp-m4_A_C3_G4	AAA	AA00	33	0.40	AA00
026	2krp-m5_A_C3_G4	AAA	AA00	36	0.40	AA00
027	2krp-m6_A_C3_G4	AAA	AA00	43	0.25	AA00
028	2krp-m7_A_C3_G4	AAA	AA00	36	0.21	AA00
029	2krp-m8_A_C3_G4	AAA	AA00	34	0.42	AA00
030	2krp-m9_A_C3_G4	AAA	AA00	38	0.30	AA00
031	2krp-m10_A_G4_G5	AAA	AA00	53	0.28	AA00
032	2krp-m1_A_G4_G5	AAA	AA00	38	0.30	AA00
033	2krp-m2_A_G4_G5	AAA	AA00	39	0.34	AA00
034	2krp-m3_A_G4_G5	AAA	AA00	42	0.31	AA00
035	2krp-m4_A_G4_G5	AAA	AA00	42	0.29	AA00
036	2krp-m5_A_G4_G5	AAA	AA00	52	0.28	AA00
037	2krp-m6_A_G4_G5	AAA	AA00	40	0.34	AA00
038	2krp-m7_A_G4_G5	AAA	AA00	42	0.25	AA00
039	2krp-m8_A_G4_G5	AAA	AA00	34	0.34	AA00
040	2krp-m9_A_G4_G5	AAA	AA00	33	0.36	AA00
041	2krp-m10_A_G5_C6	AAA	AA08	53	0.25	AA08
042	2krp-m1_A_G5_C6	AAA	AA08	56	0.23	AA08
043	2krp-m2_A_G5_C6	AAA	AA08	44	0.53	AA08
044	2krp-m3_A_G5_C6	AAA	AA00	23	0.44	AA00
045	2krp-m4_A_G5_C6	AAA	AA08	41	0.48	AA08
046	2krp-m5_A_G5_C6	AAA	AA08	48	0.46	AA08
047	2krp-m6_A_G5_C6	AAA	AA00	16	0.38	AA00
048	2krp-m7_A_G5_C6	AAA	AA00	68	0.16	AA00
049	2krp-m8_A_G5_C6	AAA	AA00	57	0.35	AA00
050	2krp-m9_A_G5_C6	AAA	AA08	27	0.43	AA08
051	2krp-m10_A_C6_U7	AAA	AA00	48	0.31	AA00
052	2krp-m1_A_C6_U7	AAA	AA00	21	0.44	AA00
053	2krp-m2_A_C6_U7	NAN	NANT	0	0.50	AA11
054	2krp-m3_A_C6_U7	NAN	NANT	0	0.46	AA06
055	2krp-m4_A_C6_U7	AAw	AA01	25	0.44	AA01
056	2krp-m5_A_C6_U7	AAw	AA01	40	0.37	AA01
057	2krp-m6_A_C6_U7	AAw	AA01	41	0.29	AA01
058	2krp-m7_A_C6_U7	AAA	AA00	30	0.42	AA00
059	2krp-m8_A_C6_U7	NAN	NANT	0	0.55	AA06
060	2krp-m9_A_C6_U7	NAN	NANT	0	0.56	AA11
061	2krp-m10_A_U7_A8	NAN	NANT	0	0.56	OP09
062	2krp-m1_A_U7_A8	NAN	NANT	0	0.57	OP09
063	2krp-m2_A_U7_A8	NAN	NANT	0	0.62	OP09
064	2krp-m3_A_U7_A8	NAN	NANT	0	1.17	OP04
065	2krp-m4_A_U7_A8	NAN	NANT	0	1.13	OP04
066	2krp-m5_A_U7_A8	NAN	NANT	0	1.61	OP18
067	2krp-m6_A_U7_A8	NAN	NANT	0	0.86	OP09
068	2krp-m7_A_U7_A8	NAN	NANT	0	1.15	OP04
069	2krp-m8_A_U7_A8	NAN	NANT	0	1.16	OP04
070	2krp-m9_A_U7_A8	NAN	NANT	0	1.20	OP04
071	2krp-m10_A_A8_C9	NAN	NANT	0	0.45	OP20
072	2krp-m1_A_A8_C9	NAN	NANT	0	0.47	OP20
073	2krp-m2_A_A8_C9	NAN	NANT	0	0.48	OP20
074	2krp-m3_A_A8_C9	NAN	NANT	0	0.46	OP20
075	2krp-m4_A_A8_C9	NAN	NANT	0	0.56	OP20
076	2krp-m5_A_A8_C9	NAN	NANT	0	0.51	OP20
077	2krp-m6_A_A8_C9	NAN	NANT	0	0.63	OP20
078	2krp-m7_A_A8_C9	NAN	NANT	0	0.50	OP20
079	2krp-m8_A_A8_C9	NAN	NANT	0	0.46	OP20
080	2krp-m9_A_A8_C9	NAN	NANT	0	0.48	OP20
081	2krp-m10_A_C9_G10	NAN	NANT	0	1.10	OP15
082	2krp-m1_A_C9_G10	NAN	NANT	0	1.10	OP15
083	2krp-m2_A_C9_G10	NAN	NANT	0	1.10	OP15
084	2krp-m3_A_C9_G10	NAN	NANT	0	1.29	OP26
085	2krp-m4_A_C9_G10	NAN	NANT	0	1.83	AA03
086	2krp-m5_A_C9_G10	NAN	NANT	0	1.34	OP26
087	2krp-m6_A_C9_G10	NAN	NANT	0	1.82	AA03
088	2krp-m7_A_C9_G10	NAN	NANT	0	1.11	OP15
089	2krp-m8_A_C9_G10	NAN	NANT	0	1.33	OP26
090	2krp-m9_A_C9_G10	NAN	NANT	0	1.13	OP15
091	2krp-m10_A_G10_A11	NAN	NANT	0	1.24	AA11
092	2krp-m1_A_G10_A11	NAN	NANT	0	1.13	AA11
093	2krp-m2_A_G10_A11	NAN	NANT	0	0.82	AA01
094	2krp-m3_A_G10_A11	NAN	NANT	0	0.78	AA10
095	2krp-m4_A_G10_A11	NAN	NANT	0	0.77	AA10
096	2krp-m5_A_G10_A11	NAN	NANT	0	0.97	AA10
097	2krp-m6_A_G10_A11	NAN	NANT	0	0.73	AA01
098	2krp-m7_A_G10_A11	NAN	NANT	0	0.80	AA10
099	2krp-m8_A_G10_A11	NAN	NANT	0	1.05	AA11
100	2krp-m9_A_G10_A11	NAN	NANT	0	0.84	AA01
101	2krp-m10_A_A11_A12	NAN	NANT	0	1.57	OP24
102	2krp-m1_A_A11_A12	NAN	NANT	0	1.26	BA17
103	2krp-m2_A_A11_A12	NAN	NANT	0	1.45	OP24
104	2krp-m3_A_A11_A12	NAN	NANT	0	1.19	BA17
105	2krp-m4_A_A11_A12	NAN	NANT	0	1.32	OP24
106	2krp-m5_A_A11_A12	NAN	NANT	0	0.58	OP15
107	2krp-m6_A_A11_A12	NAN	NANT	0	1.43	OP24
108	2krp-m7_A_A11_A12	NAN	NANT	0	0.97	BA16
109	2krp-m8_A_A11_A12	NAN	NANT	0	1.46	OP24
110	2krp-m9_A_A11_A12	NAN	NANT	0	1.34	OP24
111	2krp-m10_A_A12_C13	AAA	AA03	58	0.32	AA03
112	2krp-m1_A_A12_C13	AAA	AA00	52	0.24	AA00
113	2krp-m2_A_A12_C13	AAA	AA00	58	0.29	AA00
114	2krp-m3_A_A12_C13	AAA	AA08	81	0.30	AA08
115	2krp-m4_A_A12_C13	AAA	AA00	14	0.47	AA00
116	2krp-m5_A_A12_C13	AAA	AA00	21	0.27	AA00
117	2krp-m6_A_A12_C13	AAA	AA00	76	0.25	AA00
118	2krp-m7_A_A12_C13	AAA	AA00	26	0.47	AA00
119	2krp-m8_A_A12_C13	AAA	AA00	52	0.25	AA00
120	2krp-m9_A_A12_C13	AAA	AA00	43	0.28	AA00
121	2krp-m10_A_C13_C14	AAA	AA00	53	0.30	AA00
122	2krp-m1_A_C13_C14	AAA	AA00	67	0.23	AA00
123	2krp-m2_A_C13_C14	AAA	AA00	67	0.26	AA00
124	2krp-m3_A_C13_C14	AAA	AA00	46	0.34	AA00
125	2krp-m4_A_C13_C14	AAA	AA00	69	0.23	AA00
126	2krp-m5_A_C13_C14	AAA	AA08	84	0.20	AA08
127	2krp-m6_A_C13_C14	AAA	AA00	51	0.31	AA00
128	2krp-m7_A_C13_C14	AAA	AA00	75	0.26	AA00
129	2krp-m8_A_C13_C14	AAA	AA00	66	0.33	AA00
130	2krp-m9_A_C13_C14	AAA	AA08	76	0.25	AA08
131	2krp-m10_A_C14_G15	AAA	AA08	88	0.20	AA08
132	2krp-m1_A_C14_G15	AAA	AA00	34	0.36	AA00
133	2krp-m2_A_C14_G15	AAA	AA00	63	0.24	AA00
134	2krp-m3_A_C14_G15	AAA	AA00	9	0.46	AA00
135	2krp-m4_A_C14_G15	AAA	AA08	86	0.19	AA08
136	2krp-m5_A_C14_G15	AAA	AA00	43	0.30	AA00
137	2krp-m6_A_C14_G15	AAA	AA08	79	0.16	AA08
138	2krp-m7_A_C14_G15	AAA	AA00	20	0.36	AA00
139	2krp-m8_A_C14_G15	AAA	AA00	58	0.28	AA00
140	2krp-m9_A_C14_G15	AAA	AA08	74	0.19	AA08
141	2krp-m10_A_G15_A16	AAA	AA08	73	0.28	AA08
142	2krp-m1_A_G15_A16	AAA	AA00	81	0.19	AA00
143	2krp-m2_A_G15_A16	AAu	AA12	45	0.25	AA12
144	2krp-m3_A_G15_A16	AAA	AA00	58	0.20	AA00
145	2krp-m4_A_G15_A16	AAA	AA00	53	0.25	AA00
146	2krp-m5_A_G15_A16	AAA	AA00	70	0.29	AA00
147	2krp-m6_A_G15_A16	AAA	AA00	56	0.32	AA00
148	2krp-m7_A_G15_A16	AAA	AA00	66	0.26	AA00
149	2krp-m8_A_G15_A16	AAA	AA00	57	0.25	AA00
150	2krp-m9_A_G15_A16	AAA	AA00	54	0.28	AA00
151	2krp-m10_A_A16_G17	AAA	AA00	61	0.27	AA00
152	2krp-m1_A_A16_G17	AAA	AA00	69	0.27	AA00
153	2krp-m2_A_A16_G17	AAA	AA00	73	0.25	AA00
154	2krp-m3_A_A16_G17	AAA	AA00	78	0.17	AA00
155	2krp-m4_A_A16_G17	AAA	AA00	61	0.25	AA00
156	2krp-m5_A_A16_G17	AAA	AA00	57	0.24	AA00
157	2krp-m6_A_A16_G17	AAA	AA00	78	0.21	AA00
158	2krp-m7_A_A16_G17	AAA	AA00	83	0.19	AA00
159	2krp-m8_A_A16_G17	AAA	AA00	84	0.17	AA00
160	2krp-m9_A_A16_G17	AAA	AA00	69	0.24	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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