DNATCO v4.1: results

Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV-mutant

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2kpd-m10_A_U1_G2	AAA	AA00	79	0.27	AA00
002	2kpd-m1_A_U1_G2	AAA	AA00	18	0.38	AA00
003	2kpd-m2_A_U1_G2	AAA	AA00	71	0.32	AA00
004	2kpd-m3_A_U1_G2	AAA	AA00	30	0.49	AA00
005	2kpd-m4_A_U1_G2	AAA	AA08	21	0.60	AA08
006	2kpd-m5_A_U1_G2	AAA	AA00	39	0.32	AA00
007	2kpd-m6_A_U1_G2	AAA	AA00	64	0.36	AA00
008	2kpd-m7_A_U1_G2	AAA	AA08	56	0.54	AA08
009	2kpd-m8_A_U1_G2	NAN	NANT	0	0.63	AA00
010	2kpd-m9_A_U1_G2	AAA	AA00	36	0.36	AA00
011	2kpd-m10_A_G2_A3	AAA	AA00	46	0.20	AA00
012	2kpd-m1_A_G2_A3	AAA	AA00	49	0.36	AA00
013	2kpd-m2_A_G2_A3	AAu	AA12	65	0.25	AA12
014	2kpd-m3_A_G2_A3	AAA	AA00	39	0.18	AA00
015	2kpd-m4_A_G2_A3	AAA	AA03	73	0.29	AA03
016	2kpd-m5_A_G2_A3	AAA	AA00	50	0.28	AA00
017	2kpd-m6_A_G2_A3	AAA	AA00	71	0.35	AA00
018	2kpd-m7_A_G2_A3	AAu	AA12	60	0.28	AA12
019	2kpd-m8_A_G2_A3	AAA	AA03	61	0.29	AA03
020	2kpd-m9_A_G2_A3	AAA	AA00	42	0.27	AA00
021	2kpd-m10_A_A3_G4	AAA	AA00	44	0.41	AA00
022	2kpd-m1_A_A3_G4	AAA	AA00	68	0.33	AA00
023	2kpd-m2_A_A3_G4	AAA	AA00	22	0.46	AA00
024	2kpd-m3_A_A3_G4	AAA	AA00	44	0.33	AA00
025	2kpd-m4_A_A3_G4	AAA	AA00	29	0.43	AA00
026	2kpd-m5_A_A3_G4	AAA	AA00	51	0.36	AA00
027	2kpd-m6_A_A3_G4	AAA	AA00	17	0.50	AA00
028	2kpd-m7_A_A3_G4	AAA	AA00	34	0.47	AA00
029	2kpd-m8_A_A3_G4	AAA	AA00	25	0.30	AA00
030	2kpd-m9_A_A3_G4	AAA	AA00	33	0.38	AA00
031	2kpd-m10_A_G4_C5	AAA	AA00	25	0.43	AA00
032	2kpd-m1_A_G4_C5	AAA	AA00	48	0.29	AA00
033	2kpd-m2_A_G4_C5	AAA	AA00	70	0.42	AA00
034	2kpd-m3_A_G4_C5	AAA	AA08	71	0.20	AA08
035	2kpd-m4_A_G4_C5	AAA	AA00	80	0.20	AA00
036	2kpd-m5_A_G4_C5	AAA	AA00	76	0.28	AA00
037	2kpd-m6_A_G4_C5	AAA	AA00	57	0.30	AA00
038	2kpd-m7_A_G4_C5	AAA	AA00	26	0.43	AA00
039	2kpd-m8_A_G4_C5	AAA	AA00	81	0.34	AA00
040	2kpd-m9_A_G4_C5	AAA	AA00	29	0.42	AA00
041	2kpd-m10_A_C5_U6	AAA	AA00	24	0.25	AA00
042	2kpd-m1_A_C5_U6	AAA	AA00	34	0.37	AA00
043	2kpd-m2_A_C5_U6	AAu	AA12	41	0.22	AA12
044	2kpd-m3_A_C5_U6	AAA	AA00	9	0.47	AA00
045	2kpd-m4_A_C5_U6	AAu	AA12	62	0.23	AA12
046	2kpd-m5_A_C5_U6	AAu	AA12	63	0.29	AA12
047	2kpd-m6_A_C5_U6	AAA	AA00	50	0.34	AA00
048	2kpd-m7_A_C5_U6	AAA	AA00	49	0.24	AA00
049	2kpd-m8_A_C5_U6	AAA	AA00	34	0.32	AA00
050	2kpd-m9_A_C5_U6	AAA	AA00	45	0.22	AA00
051	2kpd-m10_A_U6_C7	AAA	AA08	42	0.42	AA08
052	2kpd-m1_A_U6_C7	AAA	AA00	11	0.63	AA00
053	2kpd-m2_A_U6_C7	AAA	AA04	44	0.64	AA04
054	2kpd-m3_A_U6_C7	AAA	AA04	21	0.60	AA04
055	2kpd-m4_A_U6_C7	AAA	AA08	37	0.51	AA08
056	2kpd-m5_A_U6_C7	AAA	AA00	42	0.51	AA00
057	2kpd-m6_A_U6_C7	AAA	AA00	20	0.36	AA00
058	2kpd-m7_A_U6_C7	AAA	AA00	16	0.51	AA00
059	2kpd-m8_A_U6_C7	AAA	AA00	39	0.32	AA00
060	2kpd-m9_A_U6_C7	AAA	AA02	46	0.30	AA02
061	2kpd-m10_A_C7_A8	OPN	OP04	67	0.19	OP04
062	2kpd-m1_A_C7_A8	NAN	NANT	0	0.66	OP03
063	2kpd-m2_A_C7_A8	NAN	NANT	0	0.52	OP04
064	2kpd-m3_A_C7_A8	NAN	NANT	0	0.53	OP04
065	2kpd-m4_A_C7_A8	OPN	OP04	43	0.40	OP04
066	2kpd-m5_A_C7_A8	NAN	NANT	0	0.32	OP04
067	2kpd-m6_A_C7_A8	OPN	OP04	9	0.59	OP04
068	2kpd-m7_A_C7_A8	OPN	OP04	11	0.34	OP04
069	2kpd-m8_A_C7_A8	NAN	NANT	0	0.51	OP04
070	2kpd-m9_A_C7_A8	NAN	NANT	0	0.54	OP04
071	2kpd-m10_A_A8_G9	AAA	AA00	76	0.19	AA00
072	2kpd-m1_A_A8_G9	AAA	AA00	70	0.41	AA00
073	2kpd-m2_A_A8_G9	AAA	AA00	13	0.41	AA00
074	2kpd-m3_A_A8_G9	AAA	AA08	86	0.17	AA08
075	2kpd-m4_A_A8_G9	AAA	AA00	47	0.36	AA00
076	2kpd-m5_A_A8_G9	AAA	AA00	80	0.34	AA00
077	2kpd-m6_A_A8_G9	AAA	AA04	49	0.43	AA04
078	2kpd-m7_A_A8_G9	AAA	AA00	76	0.21	AA00
079	2kpd-m8_A_A8_G9	AAA	AA00	79	0.25	AA00
080	2kpd-m9_A_A8_G9	AAA	AA00	47	0.39	AA00
081	2kpd-m10_A_G9_U10	NAN	NANT	0	1.42	AA13
082	2kpd-m1_A_G9_U10	NAN	NANT	0	0.96	OP04
083	2kpd-m2_A_G9_U10	NAN	NANT	0	0.67	OP03
084	2kpd-m3_A_G9_U10	NAN	NANT	0	0.69	OP29
085	2kpd-m4_A_G9_U10	NAN	NANT	0	1.79	OP17
086	2kpd-m5_A_G9_U10	NAN	NANT	0	0.75	OP03
087	2kpd-m6_A_G9_U10	NAN	NANT	0	1.27	AA13
088	2kpd-m7_A_G9_U10	NAN	NANT	0	0.71	OP03
089	2kpd-m8_A_G9_U10	NAN	NANT	0	2.16	OP17
090	2kpd-m9_A_G9_U10	NAN	NANT	0	1.16	OP03
091	2kpd-m10_A_U10_U11	NAN	NANT	0	1.83	OP16
092	2kpd-m1_A_U10_U11	NAN	NANT	0	0.42	OP20
093	2kpd-m2_A_U10_U11	NAN	NANT	0	1.92	OP16
094	2kpd-m3_A_U10_U11	NAN	NANT	0	1.98	OP10
095	2kpd-m4_A_U10_U11	NAN	NANT	0	1.33	OP01
096	2kpd-m5_A_U10_U11	NAN	NANT	0	1.42	AB04
097	2kpd-m6_A_U10_U11	NAN	NANT	0	1.68	OP01
098	2kpd-m7_A_U10_U11	NAN	NANT	0	1.07	OP01
099	2kpd-m8_A_U10_U11	NAN	NANT	0	1.18	OP31
100	2kpd-m9_A_U10_U11	NAN	NANT	0	1.26	OP01
101	2kpd-m10_A_U11_U12	NAN	NANT	0	0.33	BB03
102	2kpd-m1_A_U11_U12	NAN	NANT	0	0.29	BB03
103	2kpd-m2_A_U11_U12	BBw	BB03	31	0.32	BB03
104	2kpd-m3_A_U11_U12	NAN	NANT	0	0.57	BA10
105	2kpd-m4_A_U11_U12	NAN	NANT	0	0.69	BB13
106	2kpd-m5_A_U11_U12	NAN	NANT	0	0.69	BB03
107	2kpd-m6_A_U11_U12	BBw	BB03	25	0.37	BB03
108	2kpd-m7_A_U11_U12	NAN	NANT	0	0.59	BB03
109	2kpd-m8_A_U11_U12	NAN	NANT	0	0.66	BB03
110	2kpd-m9_A_U11_U12	NAN	NANT	0	0.52	BB03
111	2kpd-m10_A_U12_G13	NAN	NANT	0	0.40	BA08
112	2kpd-m1_A_U12_G13	NAN	NANT	0	0.33	AA09
113	2kpd-m2_A_U12_G13	NAN	NANT	0	0.47	BA08
114	2kpd-m3_A_U12_G13	NAN	NANT	0	0.36	AA09
115	2kpd-m4_A_U12_G13	NAN	NANT	0	0.42	AA08
116	2kpd-m5_A_U12_G13	NAN	NANT	0	0.36	AA09
117	2kpd-m6_A_U12_G13	NAN	NANT	0	0.40	AA09
118	2kpd-m7_A_U12_G13	NAN	NANT	0	0.52	BA08
119	2kpd-m8_A_U12_G13	NAN	NANT	0	0.36	AA08
120	2kpd-m9_A_U12_G13	NAN	NANT	0	0.43	AA09
121	2kpd-m10_A_G13_C14	AAA	AA00	18	0.41	AA00
122	2kpd-m1_A_G13_C14	AAA	AA00	15	0.39	AA00
123	2kpd-m2_A_G13_C14	AAA	AA08	10	0.40	AA08
124	2kpd-m3_A_G13_C14	AAA	AA02	22	0.41	AA02
125	2kpd-m4_A_G13_C14	AAA	AA00	12	0.37	AA00
126	2kpd-m5_A_G13_C14	NAN	NANT	0	0.36	AA00
127	2kpd-m6_A_G13_C14	AAu	AA12	8	0.43	AA12
128	2kpd-m7_A_G13_C14	AAA	AA04	14	0.48	AA04
129	2kpd-m8_A_G13_C14	AAA	AA08	16	0.28	AA08
130	2kpd-m9_A_G13_C14	AAA	AA09	20	0.42	AA09
131	2kpd-m10_A_C14_U15	AAA	AA00	51	0.34	AA00
132	2kpd-m1_A_C14_U15	AAA	AA00	62	0.30	AA00
133	2kpd-m2_A_C14_U15	AAA	AA00	21	0.34	AA00
134	2kpd-m3_A_C14_U15	AAA	AA00	16	0.39	AA00
135	2kpd-m4_A_C14_U15	AAA	AA00	32	0.44	AA00
136	2kpd-m5_A_C14_U15	AAA	AA00	21	0.41	AA00
137	2kpd-m6_A_C14_U15	AAA	AA00	28	0.36	AA00
138	2kpd-m7_A_C14_U15	AAA	AA00	38	0.39	AA00
139	2kpd-m8_A_C14_U15	AAA	AA00	27	0.40	AA00
140	2kpd-m9_A_C14_U15	AAA	AA00	23	0.45	AA00
141	2kpd-m10_A_U15_C16	AAA	AA00	25	0.28	AA00
142	2kpd-m1_A_U15_C16	AAA	AA00	76	0.24	AA00
143	2kpd-m2_A_U15_C16	AAA	AA00	58	0.36	AA00
144	2kpd-m3_A_U15_C16	AAA	AA00	22	0.39	AA00
145	2kpd-m4_A_U15_C16	AAA	AA00	26	0.41	AA00
146	2kpd-m5_A_U15_C16	AAA	AA00	54	0.33	AA00
147	2kpd-m6_A_U15_C16	AAA	AA00	48	0.30	AA00
148	2kpd-m7_A_U15_C16	AAA	AA00	45	0.41	AA00
149	2kpd-m8_A_U15_C16	AAA	AA00	39	0.42	AA00
150	2kpd-m9_A_U15_C16	AAA	AA04	57	0.45	AA04
151	2kpd-m10_A_C16_A17	AAA	AA00	52	0.22	AA00
152	2kpd-m1_A_C16_A17	AAA	AA00	47	0.24	AA00
153	2kpd-m2_A_C16_A17	AAA	AA00	27	0.39	AA00
154	2kpd-m3_A_C16_A17	AAA	AA00	50	0.45	AA00
155	2kpd-m4_A_C16_A17	AAA	AA00	60	0.32	AA00
156	2kpd-m5_A_C16_A17	AAA	AA00	54	0.18	AA00
157	2kpd-m6_A_C16_A17	AAA	AA00	57	0.36	AA00
158	2kpd-m7_A_C16_A17	AAA	AA00	36	0.36	AA00
159	2kpd-m8_A_C16_A17	AAA	AA00	76	0.24	AA00
160	2kpd-m9_A_C16_A17	AAA	AA00	48	0.23	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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IC

OPN

Z

N

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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