DNATCO v4.1: results

Structure determination of the top-loop of the conserved 3 terminal secondary structure in the genome of YFV

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2kpc-m10_A_U1_G2	NAN	NANT	0	0.69	AA12
002	2kpc-m1_A_U1_G2	AAA	AA00	61	0.20	AA00
003	2kpc-m2_A_U1_G2	AAu	AA12	62	0.26	AA12
004	2kpc-m3_A_U1_G2	AAA	AA00	16	0.44	AA00
005	2kpc-m4_A_U1_G2	NAN	NANT	0	0.61	AA04
006	2kpc-m5_A_U1_G2	AAA	AA00	12	0.44	AA00
007	2kpc-m6_A_U1_G2	AAA	AA00	45	0.35	AA00
008	2kpc-m7_A_U1_G2	AAA	AA00	62	0.28	AA00
009	2kpc-m8_A_U1_G2	AAA	AA04	18	0.62	AA04
010	2kpc-m9_A_U1_G2	AAA	AA00	47	0.33	AA00
011	2kpc-m10_A_G2_A3	AAA	AA00	76	0.21	AA00
012	2kpc-m1_A_G2_A3	AAA	AA00	69	0.27	AA00
013	2kpc-m2_A_G2_A3	AAA	AA00	42	0.28	AA00
014	2kpc-m3_A_G2_A3	AAA	AA00	55	0.26	AA00
015	2kpc-m4_A_G2_A3	AAA	AA00	37	0.27	AA00
016	2kpc-m5_A_G2_A3	AAA	AA00	66	0.24	AA00
017	2kpc-m6_A_G2_A3	AAA	AA00	74	0.25	AA00
018	2kpc-m7_A_G2_A3	AAA	AA00	52	0.31	AA00
019	2kpc-m8_A_G2_A3	AAA	AA00	71	0.25	AA00
020	2kpc-m9_A_G2_A3	AAA	AA00	16	0.34	AA00
021	2kpc-m10_A_A3_G4	AAA	AA00	49	0.31	AA00
022	2kpc-m1_A_A3_G4	AAA	AA00	77	0.21	AA00
023	2kpc-m2_A_A3_G4	AAA	AA00	65	0.24	AA00
024	2kpc-m3_A_A3_G4	AAA	AA00	63	0.26	AA00
025	2kpc-m4_A_A3_G4	AAA	AA00	68	0.33	AA00
026	2kpc-m5_A_A3_G4	AAA	AA00	63	0.27	AA00
027	2kpc-m6_A_A3_G4	AAA	AA00	84	0.23	AA00
028	2kpc-m7_A_A3_G4	AAA	AA00	47	0.25	AA00
029	2kpc-m8_A_A3_G4	AAA	AA00	73	0.20	AA00
030	2kpc-m9_A_A3_G4	AAA	AA00	60	0.29	AA00
031	2kpc-m10_A_G4_C5	AAA	AA00	61	0.35	AA00
032	2kpc-m1_A_G4_C5	AAA	AA00	54	0.28	AA00
033	2kpc-m2_A_G4_C5	AAA	AA00	38	0.33	AA00
034	2kpc-m3_A_G4_C5	AAA	AA00	21	0.43	AA00
035	2kpc-m4_A_G4_C5	AAA	AA00	27	0.33	AA00
036	2kpc-m5_A_G4_C5	AAA	AA00	13	0.38	AA00
037	2kpc-m6_A_G4_C5	AAA	AA00	55	0.20	AA00
038	2kpc-m7_A_G4_C5	AAA	AA00	62	0.30	AA00
039	2kpc-m8_A_G4_C5	AAA	AA00	23	0.38	AA00
040	2kpc-m9_A_G4_C5	AAA	AA00	23	0.31	AA00
041	2kpc-m10_A_C5_A6	AAA	AA08	77	0.27	AA08
042	2kpc-m1_A_C5_A6	AAA	AA00	63	0.24	AA00
043	2kpc-m2_A_C5_A6	AAA	AA08	69	0.39	AA08
044	2kpc-m3_A_C5_A6	AAA	AA00	54	0.34	AA00
045	2kpc-m4_A_C5_A6	AAA	AA00	72	0.20	AA00
046	2kpc-m5_A_C5_A6	AAA	AA00	74	0.25	AA00
047	2kpc-m6_A_C5_A6	AAA	AA00	54	0.24	AA00
048	2kpc-m7_A_C5_A6	AAA	AA00	88	0.18	AA00
049	2kpc-m8_A_C5_A6	AAA	AA00	60	0.25	AA00
050	2kpc-m9_A_C5_A6	AAA	AA00	52	0.25	AA00
051	2kpc-m10_A_A6_C7	AAA	AA00	44	0.29	AA00
052	2kpc-m1_A_A6_C7	AAA	AA00	38	0.29	AA00
053	2kpc-m2_A_A6_C7	AAA	AA00	37	0.34	AA00
054	2kpc-m3_A_A6_C7	AAA	AA00	29	0.37	AA00
055	2kpc-m4_A_A6_C7	AAA	AA00	24	0.43	AA00
056	2kpc-m5_A_A6_C7	AAA	AA08	58	0.38	AA08
057	2kpc-m6_A_A6_C7	AAA	AA00	64	0.23	AA00
058	2kpc-m7_A_A6_C7	AAA	AA00	85	0.19	AA00
059	2kpc-m8_A_A6_C7	AAA	AA00	82	0.19	AA00
060	2kpc-m9_A_A6_C7	AAA	AA00	80	0.18	AA00
061	2kpc-m10_A_C7_A8	NAN	NANT	0	0.79	AA08
062	2kpc-m1_A_C7_A8	AAA	AA08	19	0.71	AA08
063	2kpc-m2_A_C7_A8	NAN	NANT	0	0.80	AA04
064	2kpc-m3_A_C7_A8	AAA	AA08	31	0.56	AA08
065	2kpc-m4_A_C7_A8	AAA	AA08	33	0.60	AA08
066	2kpc-m5_A_C7_A8	AAA	AA08	15	0.60	AA08
067	2kpc-m6_A_C7_A8	AAA	AA08	10	0.74	AA08
068	2kpc-m7_A_C7_A8	NAN	NANT	0	0.75	AA08
069	2kpc-m8_A_C7_A8	AAA	AA08	23	0.74	AA08
070	2kpc-m9_A_C7_A8	AAA	AA08	50	0.54	AA08
071	2kpc-m10_A_A8_G9	NAN	NANT	0	0.77	AB04
072	2kpc-m1_A_A8_G9	NAN	NANT	0	0.79	AA04
073	2kpc-m2_A_A8_G9	NAN	NANT	0	0.87	AA04
074	2kpc-m3_A_A8_G9	NAN	NANT	0	0.94	AA04
075	2kpc-m4_A_A8_G9	NAN	NANT	0	0.71	AA04
076	2kpc-m5_A_A8_G9	NAN	NANT	0	0.66	AB04
077	2kpc-m6_A_A8_G9	NAN	NANT	0	0.86	AA04
078	2kpc-m7_A_A8_G9	NAN	NANT	0	0.75	AA04
079	2kpc-m8_A_A8_G9	NAN	NANT	0	0.91	AA04
080	2kpc-m9_A_A8_G9	NAN	NANT	0	0.94	AA04
081	2kpc-m10_A_G9_U10	NAN	NANT	0	1.18	BB07
082	2kpc-m1_A_G9_U10	NAN	NANT	0	0.80	OP23
083	2kpc-m2_A_G9_U10	NAN	NANT	0	1.81	ZZ1S
084	2kpc-m3_A_G9_U10	NAN	NANT	0	0.90	OP23
085	2kpc-m4_A_G9_U10	NAN	NANT	0	1.95	ZZ1S
086	2kpc-m5_A_G9_U10	NAN	NANT	0	1.22	BB07
087	2kpc-m6_A_G9_U10	NAN	NANT	0	1.88	ZZ1S
088	2kpc-m7_A_G9_U10	NAN	NANT	0	1.87	ZZ1S
089	2kpc-m8_A_G9_U10	NAN	NANT	0	0.87	OP22
090	2kpc-m9_A_G9_U10	NAN	NANT	0	0.86	OP23
091	2kpc-m10_A_U10_U11	NAN	NANT	0	1.31	OP27
092	2kpc-m1_A_U10_U11	NAN	NANT	0	1.03	OP15
093	2kpc-m2_A_U10_U11	NAN	NANT	0	1.90	BA13
094	2kpc-m3_A_U10_U11	NAN	NANT	0	1.86	BB02
095	2kpc-m4_A_U10_U11	NAN	NANT	0	2.03	BA13
096	2kpc-m5_A_U10_U11	NAN	NANT	0	1.40	OP24
097	2kpc-m6_A_U10_U11	NAN	NANT	0	1.98	OP25
098	2kpc-m7_A_U10_U11	NAN	NANT	0	1.72	OPS1
099	2kpc-m8_A_U10_U11	NAN	NANT	0	1.69	BA16
100	2kpc-m9_A_U10_U11	NAN	NANT	0	0.97	OP15
101	2kpc-m10_A_U11_U12	AAA	AA00	89	0.18	AA00
102	2kpc-m1_A_U11_U12	AAA	AA00	74	0.27	AA00
103	2kpc-m2_A_U11_U12	AAA	AA00	31	0.26	AA00
104	2kpc-m3_A_U11_U12	AAA	AA00	57	0.29	AA00
105	2kpc-m4_A_U11_U12	AAA	AA00	50	0.29	AA00
106	2kpc-m5_A_U11_U12	AAA	AA00	76	0.25	AA00
107	2kpc-m6_A_U11_U12	AAA	AA00	57	0.38	AA00
108	2kpc-m7_A_U11_U12	AAA	AA00	81	0.20	AA00
109	2kpc-m8_A_U11_U12	AAA	AA00	81	0.20	AA00
110	2kpc-m9_A_U11_U12	AAA	AA00	53	0.30	AA00
111	2kpc-m10_A_U12_G13	AAA	AA00	35	0.43	AA00
112	2kpc-m1_A_U12_G13	AAA	AA00	44	0.37	AA00
113	2kpc-m2_A_U12_G13	AAA	AA00	62	0.19	AA00
114	2kpc-m3_A_U12_G13	AAA	AA00	64	0.19	AA00
115	2kpc-m4_A_U12_G13	AAA	AA00	80	0.17	AA00
116	2kpc-m5_A_U12_G13	AAA	AA00	17	0.38	AA00
117	2kpc-m6_A_U12_G13	AAA	AA00	63	0.29	AA00
118	2kpc-m7_A_U12_G13	AAA	AA00	25	0.40	AA00
119	2kpc-m8_A_U12_G13	AAA	AA00	32	0.37	AA00
120	2kpc-m9_A_U12_G13	AAA	AA00	65	0.30	AA00
121	2kpc-m10_A_G13_C14	AAA	AA00	23	0.29	AA00
122	2kpc-m1_A_G13_C14	AAA	AA00	27	0.32	AA00
123	2kpc-m2_A_G13_C14	AAA	AA00	17	0.28	AA00
124	2kpc-m3_A_G13_C14	AAA	AA00	56	0.24	AA00
125	2kpc-m4_A_G13_C14	AAA	AA00	22	0.32	AA00
126	2kpc-m5_A_G13_C14	AAA	AA00	51	0.33	AA00
127	2kpc-m6_A_G13_C14	AAA	AA00	49	0.29	AA00
128	2kpc-m7_A_G13_C14	AAA	AA00	63	0.24	AA00
129	2kpc-m8_A_G13_C14	AAA	AA00	34	0.28	AA00
130	2kpc-m9_A_G13_C14	AAA	AA00	76	0.21	AA00
131	2kpc-m10_A_C14_U15	AAA	AA00	74	0.28	AA00
132	2kpc-m1_A_C14_U15	AAA	AA00	28	0.27	AA00
133	2kpc-m2_A_C14_U15	AAA	AA00	27	0.30	AA00
134	2kpc-m3_A_C14_U15	AAA	AA00	54	0.35	AA00
135	2kpc-m4_A_C14_U15	AAA	AA00	50	0.31	AA00
136	2kpc-m5_A_C14_U15	AAA	AA00	28	0.34	AA00
137	2kpc-m6_A_C14_U15	AAA	AA00	78	0.22	AA00
138	2kpc-m7_A_C14_U15	AAA	AA08	23	0.53	AA08
139	2kpc-m8_A_C14_U15	AAA	AA00	48	0.42	AA00
140	2kpc-m9_A_C14_U15	AAA	AA00	23	0.36	AA00
141	2kpc-m10_A_U15_C16	AAA	AA00	67	0.20	AA00
142	2kpc-m1_A_U15_C16	AAA	AA00	60	0.23	AA00
143	2kpc-m2_A_U15_C16	AAA	AA00	60	0.27	AA00
144	2kpc-m3_A_U15_C16	AAA	AA00	85	0.18	AA00
145	2kpc-m4_A_U15_C16	AAA	AA00	63	0.25	AA00
146	2kpc-m5_A_U15_C16	AAA	AA08	82	0.21	AA08
147	2kpc-m6_A_U15_C16	AAA	AA00	75	0.24	AA00
148	2kpc-m7_A_U15_C16	AAA	AA00	78	0.23	AA00
149	2kpc-m8_A_U15_C16	AAA	AA00	34	0.37	AA00
150	2kpc-m9_A_U15_C16	AAA	AA00	58	0.25	AA00
151	2kpc-m10_A_C16_A17	AAA	AA00	89	0.17	AA00
152	2kpc-m1_A_C16_A17	AAA	AA00	74	0.17	AA00
153	2kpc-m2_A_C16_A17	AAA	AA00	14	0.42	AA00
154	2kpc-m3_A_C16_A17	AAA	AA00	29	0.40	AA00
155	2kpc-m4_A_C16_A17	AAA	AA00	55	0.36	AA00
156	2kpc-m5_A_C16_A17	AAA	AA00	91	0.15	AA00
157	2kpc-m6_A_C16_A17	AAA	AA00	82	0.19	AA00
158	2kpc-m7_A_C16_A17	AAA	AA00	64	0.28	AA00
159	2kpc-m8_A_C16_A17	NAN	NANT	0	1.02	ZZ01
160	2kpc-m9_A_C16_A17	AAA	AA00	66	0.24	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 160 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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