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Conformers: ABBIImiBZICOPNSYNN
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Structure of 2'F-ANA/RNA hybrid duplex

Results of the assignment of 180 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kp4-m10_A_GFL1_CFL2B-ABA05350.17 BA05
0022kp4-m1_A_GFL1_CFL2BBBBB01720.23 BB01
0032kp4-m2_A_GFL1_CFL2BBBBB01630.22 BB01
0042kp4-m3_A_GFL1_CFL2BBBBB01740.21 BB01
0052kp4-m4_A_GFL1_CFL2BBBBB01440.19 BB01
0062kp4-m5_A_GFL1_CFL2BBBBB01800.19 BB01
0072kp4-m6_A_GFL1_CFL2BBBBB01530.24 BB01
0082kp4-m7_A_GFL1_CFL2BBBBB01700.23 BB01
0092kp4-m8_A_GFL1_CFL2BBBBB00690.31 BB00
0102kp4-m9_A_GFL1_CFL2BBBBB01820.17 BB01
0112kp4-m10_A_CFL2_TAF3BBBBB01390.25 BB01
0122kp4-m1_A_CFL2_TAF3BBBBB01710.21 BB01
0132kp4-m2_A_CFL2_TAF3BBBBB01190.20 BB01
0142kp4-m3_A_CFL2_TAF3miBBB12140.42 BB12
0152kp4-m4_A_CFL2_TAF3NANNANT00.63 AA02
0162kp4-m5_A_CFL2_TAF3BBBBB01480.29 BB01
0172kp4-m6_A_CFL2_TAF3B-ABA05450.31 BA05
0182kp4-m7_A_CFL2_TAF3BBBBB01250.19 BB01
0192kp4-m8_A_CFL2_TAF3miBBB12180.47 BB12
0202kp4-m9_A_CFL2_TAF3BBBBB01300.17 BB01
0212kp4-m10_A_TAF3_A5L4BBBBB01570.23 BB01
0222kp4-m1_A_TAF3_A5L4BBBBB00290.41 BB00
0232kp4-m2_A_TAF3_A5L4A-BAB01120.44 AB01
0242kp4-m3_A_TAF3_A5L4BBwBB16550.47 BB16
0252kp4-m4_A_TAF3_A5L4BBBBB01500.28 BB01
0262kp4-m5_A_TAF3_A5L4BBBBB00540.39 BB00
0272kp4-m6_A_TAF3_A5L4BBBBB01420.29 BB01
0282kp4-m7_A_TAF3_A5L4BBBBB01390.26 BB01
0292kp4-m8_A_TAF3_A5L4BBwBB16640.41 BB16
0302kp4-m9_A_TAF3_A5L4BBBBB01500.18 BB01
0312kp4-m10_A_A5L4_TAF5B-ABA05870.24 BA05
0322kp4-m1_A_A5L4_TAF5B-ABA05690.34 BA05
0332kp4-m2_A_A5L4_TAF5B-ABA05770.26 BA05
0342kp4-m3_A_A5L4_TAF5B-ABA05630.40 BA05
0352kp4-m4_A_A5L4_TAF5B-ABA05800.22 BA05
0362kp4-m5_A_A5L4_TAF5B-ABA05860.26 BA05
0372kp4-m6_A_A5L4_TAF5B-ABA05800.25 BA05
0382kp4-m7_A_A5L4_TAF5B-ABA05790.27 BA05
0392kp4-m8_A_A5L4_TAF5B-ABA05720.29 BA05
0402kp4-m9_A_A5L4_TAF5B-ABA05820.15 BA05
0412kp4-m10_A_TAF5_A5L6NANNANT00.65 AA02
0422kp4-m1_A_TAF5_A5L6NANNANT00.59 AA02
0432kp4-m2_A_TAF5_A5L6NANNANT00.68 AA02
0442kp4-m3_A_TAF5_A5L6NANNANT00.56 AA00
0452kp4-m4_A_TAF5_A5L6NANNANT00.62 AA02
0462kp4-m5_A_TAF5_A5L6NANNANT00.51 AA00
0472kp4-m6_A_TAF5_A5L6NANNANT00.65 AA02
0482kp4-m7_A_TAF5_A5L6NANNANT00.65 AA02
0492kp4-m8_A_TAF5_A5L6NANNANT00.62 AA02
0502kp4-m9_A_TAF5_A5L6NANNANT00.63 AA02
0512kp4-m10_A_A5L6_A5L7BBBBB01560.23 BB01
0522kp4-m1_A_A5L6_A5L7NANNANT00.55 AA02
0532kp4-m2_A_A5L6_A5L7BBBBB01440.25 BB01
0542kp4-m3_A_A5L6_A5L7NANNANT00.61 AA02
0552kp4-m4_A_A5L6_A5L7BBBBB01450.25 BB01
0562kp4-m5_A_A5L6_A5L7A-BAB01170.38 AB01
0572kp4-m6_A_A5L6_A5L7BBBBB01400.25 BB01
0582kp4-m7_A_A5L6_A5L7NANNANT00.64 AA02
0592kp4-m8_A_A5L6_A5L7BBBBB01470.22 BB01
0602kp4-m9_A_A5L6_A5L7BBBBB01330.25 BB01
0612kp4-m10_A_A5L7_TAF8B-ABA05720.25 BA05
0622kp4-m1_A_A5L7_TAF8B-ABA05830.25 BA05
0632kp4-m2_A_A5L7_TAF8B-ABA05610.23 BA05
0642kp4-m3_A_A5L7_TAF8B-ABA05810.25 BA05
0652kp4-m4_A_A5L7_TAF8B-ABA05670.14 BA05
0662kp4-m5_A_A5L7_TAF8B-ABA05740.11 BA05
0672kp4-m6_A_A5L7_TAF8B-ABA05610.24 BA05
0682kp4-m7_A_A5L7_TAF8B-ABA05690.22 BA05
0692kp4-m8_A_A5L7_TAF8B-ABA05710.26 BA05
0702kp4-m9_A_A5L7_TAF8B-ABA05730.30 BA05
0712kp4-m10_A_TAF8_GFL9NANNANT00.42 BB03
0722kp4-m1_A_TAF8_GFL9A-BAB01390.49 AB01
0732kp4-m2_A_TAF8_GFL9A-BAB01320.47 AB01
0742kp4-m3_A_TAF8_GFL9NANNANT00.37 BB13
0752kp4-m4_A_TAF8_GFL9NANNANT00.43 AA01
0762kp4-m5_A_TAF8_GFL9BBBBB01190.29 BB01
0772kp4-m6_A_TAF8_GFL9A-BAB01540.41 AB01
0782kp4-m7_A_TAF8_GFL9A-BAB01510.46 AB01
0792kp4-m8_A_TAF8_GFL9NANNANT00.37 BB03
0802kp4-m9_A_TAF8_GFL9NANNANT00.52 BB13
0812kp4-m10_A_GFL9_GFL10BBBBB00280.45 BB00
0822kp4-m1_A_GFL9_GFL10BBBBB00650.36 BB00
0832kp4-m2_A_GFL9_GFL10BBBBB00220.52 BB00
0842kp4-m3_A_GFL9_GFL10BBwBB16590.65 BB16
0852kp4-m4_A_GFL9_GFL10BBBBB00440.43 BB00
0862kp4-m5_A_GFL9_GFL10NANNANT00.87 AB02
0872kp4-m6_A_GFL9_GFL10BBBBB00570.39 BB00
0882kp4-m7_A_GFL9_GFL10BBBBB00370.46 BB00
0892kp4-m8_A_GFL9_GFL10BBBBB00500.40 BB00
0902kp4-m9_A_GFL9_GFL10BBBBB00120.52 BB00
0912kp4-m10_B_C11_C12AAAAA00760.26 AA00
0922kp4-m1_B_C11_C12AAAAA00270.31 AA00
0932kp4-m2_B_C11_C12AAAAA00690.26 AA00
0942kp4-m3_B_C11_C12AAAAA00500.28 AA00
0952kp4-m4_B_C11_C12AAAAA04660.39 AA04
0962kp4-m5_B_C11_C12AAAAA04800.37 AA04
0972kp4-m6_B_C11_C12AAAAA00720.22 AA00
0982kp4-m7_B_C11_C12AAAAA00680.23 AA00
0992kp4-m8_B_C11_C12AAAAA00560.24 AA00
1002kp4-m9_B_C11_C12AAAAA00720.28 AA00
1012kp4-m10_B_C12_A13AAAAA00770.28 AA00
1022kp4-m1_B_C12_A13AAAAA00670.29 AA00
1032kp4-m2_B_C12_A13AAAAA00630.32 AA00
1042kp4-m3_B_C12_A13AAAAA00670.29 AA00
1052kp4-m4_B_C12_A13AAAAA00680.33 AA00
1062kp4-m5_B_C12_A13AAAAA00440.30 AA00
1072kp4-m6_B_C12_A13AAAAA00770.31 AA00
1082kp4-m7_B_C12_A13AAAAA00750.37 AA00
1092kp4-m8_B_C12_A13AAAAA00780.33 AA00
1102kp4-m9_B_C12_A13AAAAA00790.41 AA00
1112kp4-m10_B_A13_U14A-BAB05230.40 AB05
1122kp4-m1_B_A13_U14AAAAA00430.27 AA00
1132kp4-m2_B_A13_U14AAAAA00510.27 AA00
1142kp4-m3_B_A13_U14AAAAA00410.29 AA00
1152kp4-m4_B_A13_U14A-BAB01280.37 AB01
1162kp4-m5_B_A13_U14AAAAA04710.29 AA04
1172kp4-m6_B_A13_U14A-BAB01300.37 AB01
1182kp4-m7_B_A13_U14A-BAB05230.46 AB05
1192kp4-m8_B_A13_U14AAAAA00430.30 AA00
1202kp4-m9_B_A13_U14NANNANT00.42 AB04
1212kp4-m10_B_U14_U15NANNANT00.27 BA05
1222kp4-m1_B_U14_U15AAAAA00560.25 AA00
1232kp4-m2_B_U14_U15AAAAA00690.25 AA00
1242kp4-m3_B_U14_U15AAAAA00680.24 AA00
1252kp4-m4_B_U14_U15NANNANT00.31 BA05
1262kp4-m5_B_U14_U15AAAAA00720.22 AA00
1272kp4-m6_B_U14_U15B-ABA0580.28 BA05
1282kp4-m7_B_U14_U15NANNANT00.28 BA05
1292kp4-m8_B_U14_U15AAAAA00630.26 AA00
1302kp4-m9_B_U14_U15B-ABA05130.31 BA05
1312kp4-m10_B_U15_A16AAAAA00500.37 AA00
1322kp4-m1_B_U15_A16AAAAA00720.25 AA00
1332kp4-m2_B_U15_A16AAAAA00650.21 AA00
1342kp4-m3_B_U15_A16AAAAA00680.27 AA00
1352kp4-m4_B_U15_A16AAAAA00600.37 AA00
1362kp4-m5_B_U15_A16AAAAA00640.24 AA00
1372kp4-m6_B_U15_A16AAAAA00520.39 AA00
1382kp4-m7_B_U15_A16AAAAA00580.39 AA00
1392kp4-m8_B_U15_A16AAAAA00620.22 AA00
1402kp4-m9_B_U15_A16AAwAA01820.30 AA01
1412kp4-m10_B_A16_U17AAAAA00490.30 AA00
1422kp4-m1_B_A16_U17AAAAA00620.24 AA00
1432kp4-m2_B_A16_U17AAAAA00500.24 AA00
1442kp4-m3_B_A16_U17AAAAA00610.28 AA00
1452kp4-m4_B_A16_U17AAAAA04790.31 AA04
1462kp4-m5_B_A16_U17AAAAA00500.28 AA00
1472kp4-m6_B_A16_U17AAAAA04690.40 AA04
1482kp4-m7_B_A16_U17AAAAA04730.35 AA04
1492kp4-m8_B_A16_U17AAAAA00400.24 AA00
1502kp4-m9_B_A16_U17AAAAA00560.28 AA00
1512kp4-m10_B_U17_A18AAAAA00600.25 AA00
1522kp4-m1_B_U17_A18AAAAA00570.27 AA00
1532kp4-m2_B_U17_A18AAAAA00640.24 AA00
1542kp4-m3_B_U17_A18AAAAA00680.26 AA00
1552kp4-m4_B_U17_A18AAAAA00700.24 AA00
1562kp4-m5_B_U17_A18AAAAA00660.28 AA00
1572kp4-m6_B_U17_A18AAAAA00450.30 AA00
1582kp4-m7_B_U17_A18AAAAA00640.26 AA00
1592kp4-m8_B_U17_A18AAAAA00640.23 AA00
1602kp4-m9_B_U17_A18AAAAA00580.28 AA00
1612kp4-m10_B_A18_G19AAAAA00660.23 AA00
1622kp4-m1_B_A18_G19AAAAA00510.20 AA00
1632kp4-m2_B_A18_G19AAAAA00700.17 AA00
1642kp4-m3_B_A18_G19AAAAA00610.20 AA00
1652kp4-m4_B_A18_G19AAwAA01910.17 AA01
1662kp4-m5_B_A18_G19AAwAA01860.16 AA01
1672kp4-m6_B_A18_G19AAAAA00650.18 AA00
1682kp4-m7_B_A18_G19AAAAA00580.23 AA00
1692kp4-m8_B_A18_G19AAAAA00630.17 AA00
1702kp4-m9_B_A18_G19AAAAA00420.23 AA00
1712kp4-m10_B_G19_C20AAAAA00750.23 AA00
1722kp4-m1_B_G19_C20AAAAA00700.23 AA00
1732kp4-m2_B_G19_C20AAAAA00770.25 AA00
1742kp4-m3_B_G19_C20AAAAA00700.20 AA00
1752kp4-m4_B_G19_C20AAAAA00740.29 AA00
1762kp4-m5_B_G19_C20AAAAA00820.17 AA00
1772kp4-m6_B_G19_C20AAAAA00700.21 AA00
1782kp4-m7_B_G19_C20AAAAA00560.21 AA00
1792kp4-m8_B_G19_C20AAAAA00760.22 AA00
1802kp4-m9_B_G19_C20AAAAA00610.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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