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Conformers: ABBIImiBZICOPNSYNN
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NMR solution structure of a 14-mer hairpin RNA with cUUCGg tetraloop

Results of the assignment of 260 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012koc-m10_A_G1_G2AAAAA03490.37 AA03
0022koc-m11_A_G1_G2AAAAA03720.32 AA03
0032koc-m12_A_G1_G2AAAAA03710.34 AA03
0042koc-m13_A_G1_G2AAAAA03890.22 AA03
0052koc-m14_A_G1_G2AAAAA00800.23 AA00
0062koc-m15_A_G1_G2AAAAA03910.19 AA03
0072koc-m16_A_G1_G2AAAAA03810.29 AA03
0082koc-m17_A_G1_G2AAAAA03860.27 AA03
0092koc-m18_A_G1_G2AAAAA03800.27 AA03
0102koc-m19_A_G1_G2AAAAA03820.21 AA03
0112koc-m1_A_G1_G2AAAAA00720.24 AA00
0122koc-m20_A_G1_G2AAAAA03850.27 AA03
0132koc-m2_A_G1_G2AAAAA03670.39 AA03
0142koc-m3_A_G1_G2AAAAA03680.32 AA03
0152koc-m4_A_G1_G2AAAAA03780.31 AA03
0162koc-m5_A_G1_G2AAAAA03800.27 AA03
0172koc-m6_A_G1_G2AAAAA00790.15 AA00
0182koc-m7_A_G1_G2AAAAA03850.27 AA03
0192koc-m8_A_G1_G2AAAAA03840.25 AA03
0202koc-m9_A_G1_G2AAAAA03770.30 AA03
0212koc-m10_A_G2_C3AAAAA00650.21 AA00
0222koc-m11_A_G2_C3AAAAA04820.26 AA04
0232koc-m12_A_G2_C3AAAAA04830.25 AA04
0242koc-m13_A_G2_C3AAAAA04790.29 AA04
0252koc-m14_A_G2_C3AAAAA04520.44 AA04
0262koc-m15_A_G2_C3AAAAA04790.32 AA04
0272koc-m16_A_G2_C3AAAAA04790.30 AA04
0282koc-m17_A_G2_C3AAAAA04830.27 AA04
0292koc-m18_A_G2_C3AAAAA04810.30 AA04
0302koc-m19_A_G2_C3AAAAA04810.30 AA04
0312koc-m1_A_G2_C3AAAAA04770.34 AA04
0322koc-m20_A_G2_C3AAAAA00730.23 AA00
0332koc-m2_A_G2_C3AAAAA04750.34 AA04
0342koc-m3_A_G2_C3AAAAA04800.28 AA04
0352koc-m4_A_G2_C3AAAAA04820.27 AA04
0362koc-m5_A_G2_C3AAAAA04820.28 AA04
0372koc-m6_A_G2_C3AAAAA00690.24 AA00
0382koc-m7_A_G2_C3AAAAA04820.28 AA04
0392koc-m8_A_G2_C3AAAAA04830.26 AA04
0402koc-m9_A_G2_C3AAAAA04770.25 AA04
0412koc-m10_A_C3_A4AAAAA04380.45 AA04
0422koc-m11_A_C3_A4AAAAA04550.41 AA04
0432koc-m12_A_C3_A4AAAAA04320.48 AA04
0442koc-m13_A_C3_A4AAAAA04340.48 AA04
0452koc-m14_A_C3_A4AAAAA04400.48 AA04
0462koc-m15_A_C3_A4AAAAA04480.44 AA04
0472koc-m16_A_C3_A4AAAAA04590.38 AA04
0482koc-m17_A_C3_A4AAAAA04430.46 AA04
0492koc-m18_A_C3_A4AAAAA04440.44 AA04
0502koc-m19_A_C3_A4AAAAA04560.39 AA04
0512koc-m1_A_C3_A4AAAAA04350.48 AA04
0522koc-m20_A_C3_A4AAAAA04740.30 AA04
0532koc-m2_A_C3_A4AAAAA04530.41 AA04
0542koc-m3_A_C3_A4AAAAA04460.46 AA04
0552koc-m4_A_C3_A4AAAAA04670.35 AA04
0562koc-m5_A_C3_A4AAAAA04290.48 AA04
0572koc-m6_A_C3_A4AAAAA04280.46 AA04
0582koc-m7_A_C3_A4AAAAA04280.49 AA04
0592koc-m8_A_C3_A4AAAAA04350.44 AA04
0602koc-m9_A_C3_A4AAAAA04290.44 AA04
0612koc-m10_A_A4_C5AAAAA04780.25 AA04
0622koc-m11_A_A4_C5AAAAA04780.23 AA04
0632koc-m12_A_A4_C5AAAAA04780.23 AA04
0642koc-m13_A_A4_C5AAAAA04800.24 AA04
0652koc-m14_A_A4_C5AAAAA04790.24 AA04
0662koc-m15_A_A4_C5AAAAA04810.22 AA04
0672koc-m16_A_A4_C5AAAAA04760.24 AA04
0682koc-m17_A_A4_C5AAAAA04790.23 AA04
0692koc-m18_A_A4_C5AAAAA04800.23 AA04
0702koc-m19_A_A4_C5AAAAA04750.25 AA04
0712koc-m1_A_A4_C5AAAAA04740.26 AA04
0722koc-m20_A_A4_C5AAAAA04790.23 AA04
0732koc-m2_A_A4_C5AAAAA04790.23 AA04
0742koc-m3_A_A4_C5AAAAA04800.22 AA04
0752koc-m4_A_A4_C5AAAAA04780.24 AA04
0762koc-m5_A_A4_C5AAAAA04770.25 AA04
0772koc-m6_A_A4_C5AAAAA04780.23 AA04
0782koc-m7_A_A4_C5AAAAA04780.22 AA04
0792koc-m8_A_A4_C5AAAAA04770.24 AA04
0802koc-m9_A_A4_C5AAAAA04800.21 AA04
0812koc-m10_A_C5_U6AAAAA08640.23 AA08
0822koc-m11_A_C5_U6AAAAA08820.17 AA08
0832koc-m12_A_C5_U6AAAAA08370.25 AA08
0842koc-m13_A_C5_U6AAAAA00450.37 AA00
0852koc-m14_A_C5_U6AAAAA00680.34 AA00
0862koc-m15_A_C5_U6AAAAA04800.38 AA04
0872koc-m16_A_C5_U6AAAAA00650.28 AA00
0882koc-m17_A_C5_U6AAAAA04720.43 AA04
0892koc-m18_A_C5_U6AAAAA08550.31 AA08
0902koc-m19_A_C5_U6AAAAA00620.32 AA00
0912koc-m1_A_C5_U6AAAAA08830.19 AA08
0922koc-m20_A_C5_U6AAAAA00200.41 AA00
0932koc-m2_A_C5_U6AAAAA04770.39 AA04
0942koc-m3_A_C5_U6AAAAA08430.24 AA08
0952koc-m4_A_C5_U6AAAAA04730.37 AA04
0962koc-m5_A_C5_U6AAAAA08910.19 AA08
0972koc-m6_A_C5_U6AAAAA00730.29 AA00
0982koc-m7_A_C5_U6AAAAA04610.42 AA04
0992koc-m8_A_C5_U6AAAAA00660.32 AA00
1002koc-m9_A_C5_U6AAAAA00250.39 AA00
1012koc-m10_A_U6_U7OPNOP09460.20 OP09
1022koc-m11_A_U6_U7OPNOP09590.19 OP09
1032koc-m12_A_U6_U7OPNOP09340.22 OP09
1042koc-m13_A_U6_U7OPNOP09730.14 OP09
1052koc-m14_A_U6_U7OPNOP09650.13 OP09
1062koc-m15_A_U6_U7OPNOP09400.22 OP09
1072koc-m16_A_U6_U7OPNOP09740.09 OP09
1082koc-m17_A_U6_U7OPNOP09760.15 OP09
1092koc-m18_A_U6_U7OPNOP09800.14 OP09
1102koc-m19_A_U6_U7OPNOP09660.13 OP09
1112koc-m1_A_U6_U7OPNOP09470.17 OP09
1122koc-m20_A_U6_U7OPNOP09780.12 OP09
1132koc-m2_A_U6_U7OPNOP09680.16 OP09
1142koc-m3_A_U6_U7OPNOP09570.12 OP09
1152koc-m4_A_U6_U7OPNOP09640.17 OP09
1162koc-m5_A_U6_U7OPNOP09560.13 OP09
1172koc-m6_A_U6_U7OPNOP09690.16 OP09
1182koc-m7_A_U6_U7OPNOP09630.17 OP09
1192koc-m8_A_U6_U7OPNOP09540.17 OP09
1202koc-m9_A_U6_U7OPNOP09790.13 OP09
1212koc-m10_A_U7_C8OPNOP20540.39 OP20
1222koc-m11_A_U7_C8NANNANT00.42 OP20
1232koc-m12_A_U7_C8NANNANT00.46 OP20
1242koc-m13_A_U7_C8OPNOP20510.40 OP20
1252koc-m14_A_U7_C8OPNOP20490.42 OP20
1262koc-m15_A_U7_C8NANNANT00.46 OP20
1272koc-m16_A_U7_C8OPNOP20650.39 OP20
1282koc-m17_A_U7_C8OPNOP20320.46 OP20
1292koc-m18_A_U7_C8OPNOP20300.41 OP20
1302koc-m19_A_U7_C8NANNANT00.40 OP20
1312koc-m1_A_U7_C8NANNANT00.41 OP20
1322koc-m20_A_U7_C8OPNOP20490.40 OP20
1332koc-m2_A_U7_C8NANNANT00.43 OP20
1342koc-m3_A_U7_C8OPNOP20320.48 OP20
1352koc-m4_A_U7_C8OPNOP20560.40 OP20
1362koc-m5_A_U7_C8NANNANT00.46 OP20
1372koc-m6_A_U7_C8NANNANT00.45 OP20
1382koc-m7_A_U7_C8OPNOP20420.42 OP20
1392koc-m8_A_U7_C8OPNOP20600.36 OP20
1402koc-m9_A_U7_C8OPNOP20360.44 OP20
1412koc-m10_A_C8_G9ZZZZZ1S210.31 ZZ1S
1422koc-m11_A_C8_G9NANNANT00.27 ZZ1S
1432koc-m12_A_C8_G9ZZZZZ1S420.22 ZZ1S
1442koc-m13_A_C8_G9NANNANT00.25 ZZ1S
1452koc-m14_A_C8_G9ZZZZZ1S510.25 ZZ1S
1462koc-m15_A_C8_G9ZZZZZ1S240.27 ZZ1S
1472koc-m16_A_C8_G9NANNANT00.41 ZZ1S
1482koc-m17_A_C8_G9ZZZZZ1S370.34 ZZ1S
1492koc-m18_A_C8_G9NANNANT00.24 ZZ1S
1502koc-m19_A_C8_G9NANNANT00.25 ZZ1S
1512koc-m1_A_C8_G9ZZZZZ1S100.31 ZZ1S
1522koc-m20_A_C8_G9NANNANT00.25 ZZ1S
1532koc-m2_A_C8_G9ZZZZZ1S240.24 ZZ1S
1542koc-m3_A_C8_G9ZZZZZ1S160.27 ZZ1S
1552koc-m4_A_C8_G9ZZZZZ1S200.25 ZZ1S
1562koc-m5_A_C8_G9ZZZZZ1S190.25 ZZ1S
1572koc-m6_A_C8_G9ZZZZZ1S470.29 ZZ1S
1582koc-m7_A_C8_G9ZZZZZ1S320.25 ZZ1S
1592koc-m8_A_C8_G9NANNANT00.44 ZZ1S
1602koc-m9_A_C8_G9ZZZZZ1S360.28 ZZ1S
1612koc-m10_A_G9_G10NANNANT00.70 AAS1
1622koc-m11_A_G9_G10NANNANT00.72 AAS1
1632koc-m12_A_G9_G10NANNANT00.68 AAS1
1642koc-m13_A_G9_G10NANNANT00.77 AAS1
1652koc-m14_A_G9_G10NANNANT00.76 AAS1
1662koc-m15_A_G9_G10NANNANT00.70 AAS1
1672koc-m16_A_G9_G10NANNANT00.78 AAS1
1682koc-m17_A_G9_G10NANNANT00.77 AAS1
1692koc-m18_A_G9_G10NANNANT00.60 AAS1
1702koc-m19_A_G9_G10NANNANT00.77 AAS1
1712koc-m1_A_G9_G10NANNANT00.73 AAS1
1722koc-m20_A_G9_G10NANNANT00.76 AAS1
1732koc-m2_A_G9_G10NANNANT00.72 AAS1
1742koc-m3_A_G9_G10NANNANT00.72 AAS1
1752koc-m4_A_G9_G10NANNANT00.69 AAS1
1762koc-m5_A_G9_G10NANNANT00.70 AAS1
1772koc-m6_A_G9_G10NANNANT00.77 AAS1
1782koc-m7_A_G9_G10NANNANT00.70 AAS1
1792koc-m8_A_G9_G10NANNANT00.78 AAS1
1802koc-m9_A_G9_G10NANNANT00.73 AAS1
1812koc-m10_A_G10_U11AAAAA04790.30 AA04
1822koc-m11_A_G10_U11AAAAA00910.17 AA00
1832koc-m12_A_G10_U11AAAAA00880.20 AA00
1842koc-m13_A_G10_U11AAAAA04820.30 AA04
1852koc-m14_A_G10_U11AAAAA04820.28 AA04
1862koc-m15_A_G10_U11AAAAA04800.26 AA04
1872koc-m16_A_G10_U11AAAAA04780.30 AA04
1882koc-m17_A_G10_U11AAAAA04780.31 AA04
1892koc-m18_A_G10_U11AAAAA04820.29 AA04
1902koc-m19_A_G10_U11AAAAA00850.23 AA00
1912koc-m1_A_G10_U11AAAAA00880.18 AA00
1922koc-m20_A_G10_U11AAAAA04830.29 AA04
1932koc-m2_A_G10_U11AAAAA00860.21 AA00
1942koc-m3_A_G10_U11AAAAA00780.21 AA00
1952koc-m4_A_G10_U11AAAAA04710.36 AA04
1962koc-m5_A_G10_U11AAAAA00870.22 AA00
1972koc-m6_A_G10_U11AAAAA00540.25 AA00
1982koc-m7_A_G10_U11AAAAA00820.20 AA00
1992koc-m8_A_G10_U11AAAAA04680.34 AA04
2002koc-m9_A_G10_U11AAAAA04840.29 AA04
2012koc-m10_A_U11_G12AAAAA04840.20 AA04
2022koc-m11_A_U11_G12AAAAA04790.29 AA04
2032koc-m12_A_U11_G12AAAAA04830.23 AA04
2042koc-m13_A_U11_G12AAAAA04890.23 AA04
2052koc-m14_A_U11_G12AAAAA04900.20 AA04
2062koc-m15_A_U11_G12AAAAA04890.22 AA04
2072koc-m16_A_U11_G12AAAAA04930.16 AA04
2082koc-m17_A_U11_G12AAAAA04810.25 AA04
2092koc-m18_A_U11_G12AAAAA04840.24 AA04
2102koc-m19_A_U11_G12AAAAA04870.22 AA04
2112koc-m1_A_U11_G12AAAAA04860.20 AA04
2122koc-m20_A_U11_G12AAAAA04830.26 AA04
2132koc-m2_A_U11_G12AAAAA04840.24 AA04
2142koc-m3_A_U11_G12AAAAA04870.20 AA04
2152koc-m4_A_U11_G12AAAAA04780.26 AA04
2162koc-m5_A_U11_G12AAAAA04870.22 AA04
2172koc-m6_A_U11_G12AAAAA04870.21 AA04
2182koc-m7_A_U11_G12AAAAA04850.20 AA04
2192koc-m8_A_U11_G12AAAAA04860.20 AA04
2202koc-m9_A_U11_G12AAAAA04860.22 AA04
2212koc-m10_A_G12_C13AAAAA04930.20 AA04
2222koc-m11_A_G12_C13AAAAA04890.23 AA04
2232koc-m12_A_G12_C13AAAAA04890.20 AA04
2242koc-m13_A_G12_C13AAAAA00130.30 AA00
2252koc-m14_A_G12_C13AAAAA04800.32 AA04
2262koc-m15_A_G12_C13AAAAA00340.26 AA00
2272koc-m16_A_G12_C13AAAAA00400.27 AA00
2282koc-m17_A_G12_C13AAAAA04930.23 AA04
2292koc-m18_A_G12_C13AAAAA00350.25 AA00
2302koc-m19_A_G12_C13AAAAA04820.22 AA04
2312koc-m1_A_G12_C13AAAAA04880.19 AA04
2322koc-m20_A_G12_C13AAAAA04710.30 AA04
2332koc-m2_A_G12_C13AAAAA04860.21 AA04
2342koc-m3_A_G12_C13AAAAA04820.26 AA04
2352koc-m4_A_G12_C13AAAAA04880.23 AA04
2362koc-m5_A_G12_C13AAAAA00220.27 AA00
2372koc-m6_A_G12_C13AAAAA00280.25 AA00
2382koc-m7_A_G12_C13AAAAA04830.27 AA04
2392koc-m8_A_G12_C13AAAAA00480.26 AA00
2402koc-m9_A_G12_C13AAAAA04920.19 AA04
2412koc-m10_A_C13_C14AAAAA04810.30 AA04
2422koc-m11_A_C13_C14AAAAA04490.34 AA04
2432koc-m12_A_C13_C14AAAAA04760.30 AA04
2442koc-m13_A_C13_C14AAAAA00160.35 AA00
2452koc-m14_A_C13_C14AAAAA00280.32 AA00
2462koc-m15_A_C13_C14AAAAA00620.27 AA00
2472koc-m16_A_C13_C14AAAAA04830.22 AA04
2482koc-m17_A_C13_C14AAAAA00490.31 AA00
2492koc-m18_A_C13_C14AAAAA08550.32 AA08
2502koc-m19_A_C13_C14AAAAA08440.26 AA08
2512koc-m1_A_C13_C14NANNANT00.51 AA04
2522koc-m20_A_C13_C14AAAAA04710.24 AA04
2532koc-m2_A_C13_C14AAAAA08440.30 AA08
2542koc-m3_A_C13_C14AAAAA04800.35 AA04
2552koc-m4_A_C13_C14NANNANT00.54 AA10
2562koc-m5_A_C13_C14AAAAA00240.39 AA00
2572koc-m6_A_C13_C14AAAAA04810.31 AA04
2582koc-m7_A_C13_C14AAAAA04460.43 AA04
2592koc-m8_A_C13_C14AAAAA00390.32 AA00
2602koc-m9_A_C13_C14AAAAA08580.27 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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