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Conformers: ABBIImiBZICOPNSYNN
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High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry

Results of the assignment of 270 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kmj-m10_A_G16_G17AAAAA00330.35 AA00
0022kmj-m1_A_G16_G17AAuAA12520.51 AA12
0032kmj-m2_A_G16_G17AAAAA00330.35 AA00
0042kmj-m3_A_G16_G17AAAAA00270.34 AA00
0052kmj-m4_A_G16_G17AAuAA12520.51 AA12
0062kmj-m5_A_G16_G17AAuAA12520.51 AA12
0072kmj-m6_A_G16_G17AAAAA04490.47 AA04
0082kmj-m7_A_G16_G17AAAAA00370.30 AA00
0092kmj-m8_A_G16_G17AAAAA00300.35 AA00
0102kmj-m9_A_G16_G17AAAAA00380.30 AA00
0112kmj-m10_A_G17_C18AAAAA04690.32 AA04
0122kmj-m1_A_G17_C18AAwAA10470.29 AA10
0132kmj-m2_A_G17_C18AAAAA04690.32 AA04
0142kmj-m3_A_G17_C18AAwAA10400.34 AA10
0152kmj-m4_A_G17_C18AAwAA10460.29 AA10
0162kmj-m5_A_G17_C18AAwAA10470.29 AA10
0172kmj-m6_A_G17_C18AAAAA04770.25 AA04
0182kmj-m7_A_G17_C18AAAAA00860.20 AA00
0192kmj-m8_A_G17_C18AAAAA04610.29 AA04
0202kmj-m9_A_G17_C18AAAAA00850.20 AA00
0212kmj-m10_A_C18_C19AAwAA10580.31 AA10
0222kmj-m1_A_C18_C19AAAAA04880.20 AA04
0232kmj-m2_A_C18_C19AAwAA10580.31 AA10
0242kmj-m3_A_C18_C19AAAAA04780.27 AA04
0252kmj-m4_A_C18_C19AAAAA04880.20 AA04
0262kmj-m5_A_C18_C19AAAAA04880.20 AA04
0272kmj-m6_A_C18_C19AAAAA04680.23 AA04
0282kmj-m7_A_C18_C19AAAAA04770.19 AA04
0292kmj-m8_A_C18_C19AAwAA10410.36 AA10
0302kmj-m9_A_C18_C19AAAAA04760.19 AA04
0312kmj-m10_A_C19_A20AAAAA04290.49 AA04
0322kmj-m1_A_C19_A20AAAAA04300.44 AA04
0332kmj-m2_A_C19_A20AAAAA04260.50 AA04
0342kmj-m3_A_C19_A20AAAAA04300.47 AA04
0352kmj-m4_A_C19_A20AAAAA04280.44 AA04
0362kmj-m5_A_C19_A20AAAAA04310.44 AA04
0372kmj-m6_A_C19_A20AAAAA04290.47 AA04
0382kmj-m7_A_C19_A20AAAAA04310.46 AA04
0392kmj-m8_A_C19_A20AAAAA04340.48 AA04
0402kmj-m9_A_C19_A20AAAAA04350.47 AA04
0412kmj-m10_A_A20_G21AAAAA04870.25 AA04
0422kmj-m1_A_A20_G21AAAAA04650.27 AA04
0432kmj-m2_A_A20_G21AAAAA04860.23 AA04
0442kmj-m3_A_A20_G21AAAAA04930.20 AA04
0452kmj-m4_A_A20_G21AAAAA04830.19 AA04
0462kmj-m5_A_A20_G21AAAAA04790.21 AA04
0472kmj-m6_A_A20_G21AAAAA04910.22 AA04
0482kmj-m7_A_A20_G21AAAAA04940.22 AA04
0492kmj-m8_A_A20_G21AAAAA04910.22 AA04
0502kmj-m9_A_A20_G21AAAAA04780.24 AA04
0512kmj-m10_A_G21_A22AAAAA04750.36 AA04
0522kmj-m1_A_G21_A22AAAAA00650.21 AA00
0532kmj-m2_A_G21_A22AAAAA04520.41 AA04
0542kmj-m3_A_G21_A22AAAAA00640.22 AA00
0552kmj-m4_A_G21_A22AAAAA00400.21 AA00
0562kmj-m5_A_G21_A22AAAAA00460.20 AA00
0572kmj-m6_A_G21_A22AAAAA04730.36 AA04
0582kmj-m7_A_G21_A22AAAAA04660.36 AA04
0592kmj-m8_A_G21_A22AAAAA04730.34 AA04
0602kmj-m9_A_G21_A22AAAAA04760.32 AA04
0612kmj-m10_A_A22_U23NANNANT00.50 IC04
0622kmj-m1_A_A22_U23NANNANT00.79 IC04
0632kmj-m2_A_A22_U23NANNANT00.50 IC04
0642kmj-m3_A_A22_U23NANNANT00.49 IC04
0652kmj-m4_A_A22_U23NANNANT00.80 IC04
0662kmj-m5_A_A22_U23NANNANT00.88 IC04
0672kmj-m6_A_A22_U23NANNANT00.64 IC04
0682kmj-m7_A_A22_U23NANNANT00.51 IC04
0692kmj-m8_A_A22_U23NANNANT00.53 IC04
0702kmj-m9_A_A22_U23NANNANT00.52 IC04
0712kmj-m10_A_U23_U25NANNANT00.95 OP21
0722kmj-m1_A_U23_U25NANNANT02.22 OP28
0732kmj-m2_A_U23_U25NANNANT00.89 OP21
0742kmj-m3_A_U23_U25NANNANT01.96 OP06
0752kmj-m4_A_U23_U25NANNANT02.00 OP06
0762kmj-m5_A_U23_U25NANNANT01.87 OP17
0772kmj-m6_A_U23_U25NANNANT01.69 OP13
0782kmj-m7_A_U23_U25NANNANT01.65 OP14
0792kmj-m8_A_U23_U25NANNANT00.89 OP21
0802kmj-m9_A_U23_U25NANNANT00.89 OP21
0812kmj-m10_A_U25_G26NANNANT02.13 OP19
0822kmj-m1_A_U25_G26NANNANT02.19 OP16
0832kmj-m2_A_U25_G26NANNANT01.05 OP21
0842kmj-m3_A_U25_G26NANNANT02.13 IC07
0852kmj-m4_A_U25_G26NANNANT01.92 OP16
0862kmj-m5_A_U25_G26NANNANT02.12 OP16
0872kmj-m6_A_U25_G26NANNANT01.16 OP21
0882kmj-m7_A_U25_G26NANNANT01.59 OP31
0892kmj-m8_A_U25_G26NANNANT02.27 OP27
0902kmj-m9_A_U25_G26NANNANT01.45 OP31
0912kmj-m10_A_G26_A27AAAAA04780.28 AA04
0922kmj-m1_A_G26_A27AAAAA00480.29 AA00
0932kmj-m2_A_G26_A27AAAAA04910.22 AA04
0942kmj-m3_A_G26_A27AAAAA04780.25 AA04
0952kmj-m4_A_G26_A27AAAAA00520.23 AA00
0962kmj-m5_A_G26_A27AAAAA04890.21 AA04
0972kmj-m6_A_G26_A27AAAAA04850.21 AA04
0982kmj-m7_A_G26_A27AAAAA04840.25 AA04
0992kmj-m8_A_G26_A27AAAAA00620.22 AA00
1002kmj-m9_A_G26_A27AAAAA04800.23 AA04
1012kmj-m10_A_A27_G28AAAAA04920.18 AA04
1022kmj-m1_A_A27_G28AAAAA04910.19 AA04
1032kmj-m2_A_A27_G28AAAAA04900.21 AA04
1042kmj-m3_A_A27_G28AAAAA04880.24 AA04
1052kmj-m4_A_A27_G28AAAAA04910.21 AA04
1062kmj-m5_A_A27_G28AAAAA04920.22 AA04
1072kmj-m6_A_A27_G28AAAAA04900.22 AA04
1082kmj-m7_A_A27_G28AAAAA04920.22 AA04
1092kmj-m8_A_A27_G28AAAAA04920.19 AA04
1102kmj-m9_A_A27_G28AAAAA04900.23 AA04
1112kmj-m10_A_G28_C29AAAAA04660.39 AA04
1122kmj-m1_A_G28_C29AAAAA04290.52 AA04
1132kmj-m2_A_G28_C29AAAAA04670.38 AA04
1142kmj-m3_A_G28_C29AAAAA00330.35 AA00
1152kmj-m4_A_G28_C29AAAAA04290.52 AA04
1162kmj-m5_A_G28_C29AAAAA04300.50 AA04
1172kmj-m6_A_G28_C29AAAAA04650.39 AA04
1182kmj-m7_A_G28_C29AAAAA04290.47 AA04
1192kmj-m8_A_G28_C29AAAAA08470.34 AA08
1202kmj-m9_A_G28_C29AAAAA04290.46 AA04
1212kmj-m10_A_C29_U31AAAAA00230.29 AA00
1222kmj-m1_A_C29_U31AAAAA00380.32 AA00
1232kmj-m2_A_C29_U31AAAAA00240.29 AA00
1242kmj-m3_A_C29_U31AAAAA00180.29 AA00
1252kmj-m4_A_C29_U31AAAAA00390.32 AA00
1262kmj-m5_A_C29_U31AAAAA00380.32 AA00
1272kmj-m6_A_C29_U31AAAAA00250.29 AA00
1282kmj-m7_A_C29_U31AAAAA00360.32 AA00
1292kmj-m8_A_C29_U31AAAAA00340.32 AA00
1302kmj-m9_A_C29_U31AAAAA00360.32 AA00
1312kmj-m10_A_U31_U32NANNANT00.72 OP04
1322kmj-m1_A_U31_U32NANNANT00.68 OP04
1332kmj-m2_A_U31_U32NANNANT00.72 OP04
1342kmj-m3_A_U31_U32NANNANT00.71 OP04
1352kmj-m4_A_U31_U32NANNANT00.68 OP04
1362kmj-m5_A_U31_U32NANNANT00.68 OP04
1372kmj-m6_A_U31_U32NANNANT00.71 OP04
1382kmj-m7_A_U31_U32NANNANT00.69 OP04
1392kmj-m8_A_U31_U32NANNANT00.71 OP04
1402kmj-m9_A_U31_U32NANNANT00.69 OP04
1412kmj-m10_A_U32_C33NANNANT00.47 OP20
1422kmj-m1_A_U32_C33NANNANT00.47 OP20
1432kmj-m2_A_U32_C33NANNANT00.47 OP20
1442kmj-m3_A_U32_C33NANNANT00.47 OP20
1452kmj-m4_A_U32_C33NANNANT00.47 OP20
1462kmj-m5_A_U32_C33NANNANT00.47 OP20
1472kmj-m6_A_U32_C33NANNANT00.47 OP20
1482kmj-m7_A_U32_C33NANNANT00.51 OP20
1492kmj-m8_A_U32_C33NANNANT00.48 OP20
1502kmj-m9_A_U32_C33NANNANT00.51 OP20
1512kmj-m10_A_C33_G34NANNANT01.05 ZZ1S
1522kmj-m1_A_C33_G34NANNANT01.04 ZZ1S
1532kmj-m2_A_C33_G34NANNANT01.05 ZZ1S
1542kmj-m3_A_C33_G34NANNANT01.05 ZZ1S
1552kmj-m4_A_C33_G34NANNANT01.04 ZZ1S
1562kmj-m5_A_C33_G34NANNANT01.04 ZZ1S
1572kmj-m6_A_C33_G34NANNANT01.05 ZZ1S
1582kmj-m7_A_C33_G34NANNANT01.05 ZZ1S
1592kmj-m8_A_C33_G34NANNANT01.05 ZZ1S
1602kmj-m9_A_C33_G34NANNANT01.05 ZZ1S
1612kmj-m10_A_G34_G36NANNANT00.88 AAS1
1622kmj-m1_A_G34_G36NANNANT00.88 AAS1
1632kmj-m2_A_G34_G36NANNANT00.88 AAS1
1642kmj-m3_A_G34_G36NANNANT00.87 AAS1
1652kmj-m4_A_G34_G36NANNANT00.88 AAS1
1662kmj-m5_A_G34_G36NANNANT00.88 AAS1
1672kmj-m6_A_G34_G36NANNANT00.88 AAS1
1682kmj-m7_A_G34_G36NANNANT00.87 AAS1
1692kmj-m8_A_G34_G36NANNANT00.86 AAS1
1702kmj-m9_A_G34_G36NANNANT00.87 AAS1
1712kmj-m10_A_G36_C37AAAAA08700.30 AA08
1722kmj-m1_A_G36_C37AAAAA08250.34 AA08
1732kmj-m2_A_G36_C37AAAAA08610.32 AA08
1742kmj-m3_A_G36_C37AAAAA0890.45 AA08
1752kmj-m4_A_G36_C37NANNANT00.46 AA04
1762kmj-m5_A_G36_C37NANNANT00.46 AA04
1772kmj-m6_A_G36_C37AAAAA08300.35 AA08
1782kmj-m7_A_G36_C37NANNANT00.45 AA04
1792kmj-m8_A_G36_C37AAAAA08200.45 AA08
1802kmj-m9_A_G36_C37NANNANT00.44 AA04
1812kmj-m10_A_C37_U38AAAAA04740.25 AA04
1822kmj-m1_A_C37_U38AAAAA04620.31 AA04
1832kmj-m2_A_C37_U38AAwAA10610.25 AA10
1842kmj-m3_A_C37_U38AAAAA04740.31 AA04
1852kmj-m4_A_C37_U38AAAAA04840.27 AA04
1862kmj-m5_A_C37_U38AAAAA04810.29 AA04
1872kmj-m6_A_C37_U38AAAAA04790.28 AA04
1882kmj-m7_A_C37_U38AAAAA04820.25 AA04
1892kmj-m8_A_C37_U38NANNANT00.52 AA10
1902kmj-m9_A_C37_U38AAAAA04700.26 AA04
1912kmj-m10_A_U38_C39AAAAA08440.38 AA08
1922kmj-m1_A_U38_C39AAwAA10510.25 AA10
1932kmj-m2_A_U38_C39AAwAA10430.27 AA10
1942kmj-m3_A_U38_C39AAwAA10620.23 AA10
1952kmj-m4_A_U38_C39AAwAA10580.22 AA10
1962kmj-m5_A_U38_C39AAwAA10520.24 AA10
1972kmj-m6_A_U38_C39AAwAA10480.25 AA10
1982kmj-m7_A_U38_C39AAwAA10510.23 AA10
1992kmj-m8_A_U38_C39AAAAA00190.40 AA00
2002kmj-m9_A_U38_C39AAwAA10580.21 AA10
2012kmj-m10_A_C39_U40AAAAA00370.34 AA00
2022kmj-m1_A_C39_U40AAAAA00400.34 AA00
2032kmj-m2_A_C39_U40AAAAA00440.34 AA00
2042kmj-m3_A_C39_U40AAAAA00370.31 AA00
2052kmj-m4_A_C39_U40AAAAA08560.33 AA08
2062kmj-m5_A_C39_U40AAAAA00420.33 AA00
2072kmj-m6_A_C39_U40AAAAA00320.37 AA00
2082kmj-m7_A_C39_U40AAAAA00410.32 AA00
2092kmj-m8_A_C39_U40AAAAA00490.34 AA00
2102kmj-m9_A_C39_U40AAAAA00420.32 AA00
2112kmj-m10_A_U40_C41NANNANT00.36 AA06
2122kmj-m1_A_U40_C41AAwAA10350.35 AA10
2132kmj-m2_A_U40_C41NANNANT00.44 AA10
2142kmj-m3_A_U40_C41AAwAA10120.43 AA10
2152kmj-m4_A_U40_C41AAwAA10470.33 AA10
2162kmj-m5_A_U40_C41AAwAA10610.34 AA10
2172kmj-m6_A_U40_C41AAwAA11720.34 AA11
2182kmj-m7_A_U40_C41AAwAA01380.27 AA01
2192kmj-m8_A_U40_C41AAwAA01620.23 AA01
2202kmj-m9_A_U40_C41AAwAA01200.33 AA01
2212kmj-m10_A_C41_U42AAAAA08670.23 AA08
2222kmj-m1_A_C41_U42AAAAA08730.22 AA08
2232kmj-m2_A_C41_U42AAAAA08670.20 AA08
2242kmj-m3_A_C41_U42AAAAA08560.21 AA08
2252kmj-m4_A_C41_U42AAAAA08860.16 AA08
2262kmj-m5_A_C41_U42AAAAA08830.18 AA08
2272kmj-m6_A_C41_U42AAAAA08770.16 AA08
2282kmj-m7_A_C41_U42AAAAA08900.18 AA08
2292kmj-m8_A_C41_U42AAAAA08580.23 AA08
2302kmj-m9_A_C41_U42AAAAA08870.19 AA08
2312kmj-m10_A_U42_G43AAAAA00740.23 AA00
2322kmj-m1_A_U42_G43AAAAA04830.24 AA04
2332kmj-m2_A_U42_G43AAAAA00760.19 AA00
2342kmj-m3_A_U42_G43AAAAA00760.20 AA00
2352kmj-m4_A_U42_G43AAAAA04820.23 AA04
2362kmj-m5_A_U42_G43AAAAA04840.23 AA04
2372kmj-m6_A_U42_G43AAAAA04770.24 AA04
2382kmj-m7_A_U42_G43AAAAA00600.18 AA00
2392kmj-m8_A_U42_G43AAAAA00800.19 AA00
2402kmj-m9_A_U42_G43AAAAA00630.19 AA00
2412kmj-m10_A_G43_G44AAwAA10520.29 AA10
2422kmj-m1_A_G43_G44AAAAA04830.24 AA04
2432kmj-m2_A_G43_G44AAwAA10520.29 AA10
2442kmj-m3_A_G43_G44AAwAA10390.29 AA10
2452kmj-m4_A_G43_G44AAAAA04830.24 AA04
2462kmj-m5_A_G43_G44AAAAA04830.24 AA04
2472kmj-m6_A_G43_G44AAAAA04840.22 AA04
2482kmj-m7_A_G43_G44AAAAA04830.22 AA04
2492kmj-m8_A_G43_G44AAwAA10340.30 AA10
2502kmj-m9_A_G43_G44AAAAA04830.22 AA04
2512kmj-m10_A_G44_U45AAAAA08710.30 AA08
2522kmj-m1_A_G44_U45AAAAA08800.30 AA08
2532kmj-m2_A_G44_U45AAAAA08710.30 AA08
2542kmj-m3_A_G44_U45AAAAA08650.30 AA08
2552kmj-m4_A_G44_U45AAAAA08800.30 AA08
2562kmj-m5_A_G44_U45AAAAA08810.30 AA08
2572kmj-m6_A_G44_U45AAAAA08800.27 AA08
2582kmj-m7_A_G44_U45AAAAA08780.31 AA08
2592kmj-m8_A_G44_U45AAAAA08680.31 AA08
2602kmj-m9_A_G44_U45AAAAA08770.31 AA08
2612kmj-m10_A_U45_C46AAAAA00530.27 AA00
2622kmj-m1_A_U45_C46AAAAA00540.23 AA00
2632kmj-m2_A_U45_C46AAAAA00530.27 AA00
2642kmj-m3_A_U45_C46AAAAA00480.29 AA00
2652kmj-m4_A_U45_C46AAAAA00540.23 AA00
2662kmj-m5_A_U45_C46AAAAA00540.23 AA00
2672kmj-m6_A_U45_C46AAAAA00740.20 AA00
2682kmj-m7_A_U45_C46AAAAA00660.21 AA00
2692kmj-m8_A_U45_C46AAAAA00340.33 AA00
2702kmj-m9_A_U45_C46AAAAA00660.21 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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