Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by Novantrone (Mitoxantrone)

Results of the assignment of 240 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kgp-m10_A_G1_G2NANNANT00.80 AA12
0022kgp-m1_A_G1_G2NANNANT00.65 AB04
0032kgp-m2_A_G1_G2NANNANT00.72 AA04
0042kgp-m3_A_G1_G2NANNANT00.78 AA12
0052kgp-m4_A_G1_G2NANNANT00.69 AA12
0062kgp-m5_A_G1_G2NANNANT00.63 AA12
0072kgp-m6_A_G1_G2NANNANT00.58 AA12
0082kgp-m7_A_G1_G2NANNANT00.70 AA04
0092kgp-m8_A_G1_G2NANNANT00.71 AA07
0102kgp-m9_A_G1_G2NANNANT00.87 AA04
0112kgp-m10_A_G2_C3NANNANT00.50 AA08
0122kgp-m1_A_G2_C3NANNANT00.52 AA08
0132kgp-m2_A_G2_C3AAAAA08120.58 AA08
0142kgp-m3_A_G2_C3NANNANT00.56 AA08
0152kgp-m4_A_G2_C3NANNANT00.54 AA08
0162kgp-m5_A_G2_C3AAAAA00110.51 AA00
0172kgp-m6_A_G2_C3AAAAA0870.50 AA08
0182kgp-m7_A_G2_C3NANNANT00.47 AB04
0192kgp-m8_A_G2_C3AAAAA0050.62 AA00
0202kgp-m9_A_G2_C3NANNANT00.62 AA04
0212kgp-m10_A_C3_A4NANNANT02.08 OP18
0222kgp-m1_A_C3_A4NANNANT02.02 OP18
0232kgp-m2_A_C3_A4NANNANT02.08 OP18
0242kgp-m3_A_C3_A4NANNANT02.02 OP18
0252kgp-m4_A_C3_A4NANNANT01.99 OP18
0262kgp-m5_A_C3_A4NANNANT01.52 AA07
0272kgp-m6_A_C3_A4NANNANT02.08 OP18
0282kgp-m7_A_C3_A4NANNANT01.20 AA01
0292kgp-m8_A_C3_A4NANNANT01.44 AB02
0302kgp-m9_A_C3_A4NANNANT00.94 BB20
0312kgp-m10_A_A4_G5NANNANT01.76 ZZ02
0322kgp-m1_A_A4_G5NANNANT01.69 ZZ02
0332kgp-m2_A_A4_G5NANNANT01.77 ZZ02
0342kgp-m3_A_A4_G5NANNANT01.41 OP26
0352kgp-m4_A_A4_G5NANNANT00.97 BB07
0362kgp-m5_A_A4_G5NANNANT01.01 AB02
0372kgp-m6_A_A4_G5NANNANT00.97 OP22
0382kgp-m7_A_A4_G5NANNANT01.18 AA04
0392kgp-m8_A_A4_G5NANNANT00.91 BB07
0402kgp-m9_A_A4_G5NANNANT01.28 OP26
0412kgp-m10_A_G5_U6AAAAA04170.31 AA04
0422kgp-m1_A_G5_U6AAAAA04190.35 AA04
0432kgp-m2_A_G5_U6AAAAA02180.41 AA02
0442kgp-m3_A_G5_U6AAAAA04270.42 AA04
0452kgp-m4_A_G5_U6AAAAA04250.46 AA04
0462kgp-m5_A_G5_U6AAAAA04170.31 AA04
0472kgp-m6_A_G5_U6NANNANT00.47 AA04
0482kgp-m7_A_G5_U6AAAAA02290.41 AA02
0492kgp-m8_A_G5_U6AAAAA04280.45 AA04
0502kgp-m9_A_G5_U6AAAAA04270.45 AA04
0512kgp-m10_A_U6_G7AAAAA02100.36 AA02
0522kgp-m1_A_U6_G7AAAAA0290.38 AA02
0532kgp-m2_A_U6_G7AAAAA0280.37 AA02
0542kgp-m3_A_U6_G7NANNANT00.37 AA04
0552kgp-m4_A_U6_G7AAAAA04210.38 AA04
0562kgp-m5_A_U6_G7AAAAA02100.36 AA02
0572kgp-m6_A_U6_G7NANNANT00.34 AA04
0582kgp-m7_A_U6_G7NANNANT00.58 BB01
0592kgp-m8_A_U6_G7AAAAA04230.37 AA04
0602kgp-m9_A_U6_G7NANNANT00.37 AA04
0612kgp-m10_A_G7_U8AAAAA04300.30 AA04
0622kgp-m1_A_G7_U8AAAAA04260.33 AA04
0632kgp-m2_A_G7_U8AAAAA04310.29 AA04
0642kgp-m3_A_G7_U8AAAAA04250.32 AA04
0652kgp-m4_A_G7_U8AAAAA04240.36 AA04
0662kgp-m5_A_G7_U8AAAAA00100.33 AA00
0672kgp-m6_A_G7_U8AAAAA04300.40 AA04
0682kgp-m7_A_G7_U8AAAAA04190.31 AA04
0692kgp-m8_A_G7_U8AAAAA04260.33 AA04
0702kgp-m9_A_G7_U8AAAAA04250.33 AA04
0712kgp-m10_A_U8_G9NANNANT00.49 AB04
0722kgp-m1_A_U8_G9AAAAA0290.45 AA02
0732kgp-m2_A_U8_G9NANNANT00.50 AB04
0742kgp-m3_A_U8_G9NANNANT00.50 AB04
0752kgp-m4_A_U8_G9AAAAA0270.44 AA02
0762kgp-m5_A_U8_G9NANNANT00.49 AB04
0772kgp-m6_A_U8_G9NANNANT00.60 AB04
0782kgp-m7_A_U8_G9AAAAA02150.40 AA02
0792kgp-m8_A_U8_G9AAAAA0250.45 AA02
0802kgp-m9_A_U8_G9AAAAA0260.44 AA02
0812kgp-m10_A_G9_A10AAAAA0070.35 AA00
0822kgp-m1_A_G9_A10AAAAA0060.40 AA00
0832kgp-m2_A_G9_A10AAAAA02290.34 AA02
0842kgp-m3_A_G9_A10AAAAA02300.35 AA02
0852kgp-m4_A_G9_A10AAAAA02250.37 AA02
0862kgp-m5_A_G9_A10AAAAA0290.30 AA02
0872kgp-m6_A_G9_A10NANNANT00.52 AA04
0882kgp-m7_A_G9_A10AAAAA02320.33 AA02
0892kgp-m8_A_G9_A10AAAAA02280.35 AA02
0902kgp-m9_A_G9_A10AAAAA02240.36 AA02
0912kgp-m10_A_A10_G11NANNANT01.05 ZZ01
0922kgp-m1_A_A10_G11NANNANT00.45 AB04
0932kgp-m2_A_A10_G11AAAAA04160.70 AA04
0942kgp-m3_A_A10_G11NANNANT00.66 AA04
0952kgp-m4_A_A10_G11NANNANT00.64 AB04
0962kgp-m5_A_A10_G11NANNANT00.36 AA04
0972kgp-m6_A_A10_G11AAAAA02130.27 AA02
0982kgp-m7_A_A10_G11AAAAA02270.30 AA02
0992kgp-m8_A_A10_G11NANNANT00.64 AB04
1002kgp-m9_A_A10_G11NANNANT00.98 AA04
1012kgp-m10_A_G11_U12NANNANT01.28 OP18
1022kgp-m1_A_G11_U12NANNANT01.01 OP04
1032kgp-m2_A_G11_U12NANNANT01.64 BB2S
1042kgp-m3_A_G11_U12NANNANT01.02 OP09
1052kgp-m4_A_G11_U12NANNANT01.08 OP09
1062kgp-m5_A_G11_U12NANNANT01.08 AA12
1072kgp-m6_A_G11_U12NANNANT01.62 BB2S
1082kgp-m7_A_G11_U12NANNANT01.23 AA12
1092kgp-m8_A_G11_U12NANNANT01.07 OP09
1102kgp-m9_A_G11_U12NANNANT00.95 OP04
1112kgp-m10_A_U12_A13NANNANT00.99 BB12
1122kgp-m1_A_U12_A13NANNANT01.50 AA08
1132kgp-m2_A_U12_A13NANNANT01.80 OP23
1142kgp-m3_A_U12_A13NANNANT01.99 OP24
1152kgp-m4_A_U12_A13NANNANT01.94 OP24
1162kgp-m5_A_U12_A13NANNANT01.17 AA05
1172kgp-m6_A_U12_A13NANNANT01.04 OPS1
1182kgp-m7_A_U12_A13NANNANT01.82 OP24
1192kgp-m8_A_U12_A13NANNANT01.93 OP24
1202kgp-m9_A_U12_A13NANNANT01.23 AB02
1212kgp-m10_A_A13_C14NANNANT01.11 AA03
1222kgp-m1_A_A13_C14NANNANT02.40 OP27
1232kgp-m2_A_A13_C14NANNANT01.66 OP24
1242kgp-m3_A_A13_C14NANNANT01.67 OP24
1252kgp-m4_A_A13_C14NANNANT00.61 AB04
1262kgp-m5_A_A13_C14NANNANT01.67 OP24
1272kgp-m6_A_A13_C14NANNANT01.05 AA03
1282kgp-m7_A_A13_C14NANNANT00.58 IC04
1292kgp-m8_A_A13_C14NANNANT00.61 AB04
1302kgp-m9_A_A13_C14NANNANT00.67 IC04
1312kgp-m10_A_C14_C15NANNANT02.13 AA11
1322kgp-m1_A_C14_C15NANNANT02.00 OP22
1332kgp-m2_A_C14_C15NANNANT01.20 ZZ01
1342kgp-m3_A_C14_C15NANNANT01.45 ZZ01
1352kgp-m4_A_C14_C15NANNANT02.07 OP23
1362kgp-m5_A_C14_C15NANNANT01.16 ZZ01
1372kgp-m6_A_C14_C15NANNANT01.05 ZZ01
1382kgp-m7_A_C14_C15NANNANT01.12 ZZ01
1392kgp-m8_A_C14_C15NANNANT02.06 OP23
1402kgp-m9_A_C14_C15NANNANT01.93 OP23
1412kgp-m10_A_C15_U16NANNANT00.44 AB03
1422kgp-m1_A_C15_U16NANNANT01.25 AB02
1432kgp-m2_A_C15_U16NANNANT01.14 AB02
1442kgp-m3_A_C15_U16NANNANT00.55 AA12
1452kgp-m4_A_C15_U16NANNANT01.58 OP18
1462kgp-m5_A_C15_U16NANNANT01.40 OP26
1472kgp-m6_A_C15_U16NANNANT01.52 OP26
1482kgp-m7_A_C15_U16NANNANT00.87 OP20
1492kgp-m8_A_C15_U16NANNANT01.55 OP18
1502kgp-m9_A_C15_U16NANNANT01.67 OP18
1512kgp-m10_A_U16_U17NANNANT00.92 OP12
1522kgp-m1_A_U16_U17NANNANT01.14 AA07
1532kgp-m2_A_U16_U17NANNANT01.09 AA07
1542kgp-m3_A_U16_U17NANNANT00.80 AA12
1552kgp-m4_A_U16_U17NANNANT00.73 AB04
1562kgp-m5_A_U16_U17NANNANT00.94 AA12
1572kgp-m6_A_U16_U17NANNANT00.46 AA04
1582kgp-m7_A_U16_U17AAAAA0070.42 AA00
1592kgp-m8_A_U16_U17NANNANT01.01 AA13
1602kgp-m9_A_U16_U17NANNANT01.15 AA13
1612kgp-m10_A_U17_C18NANNANT00.58 AA04
1622kgp-m1_A_U17_C18AAAAA0060.47 AA00
1632kgp-m2_A_U17_C18NANNANT00.48 AB04
1642kgp-m3_A_U17_C18AAAAA0050.51 AA00
1652kgp-m4_A_U17_C18NANNANT00.46 AB04
1662kgp-m5_A_U17_C18AAAAA0060.46 AA00
1672kgp-m6_A_U17_C18NANNANT00.60 AA04
1682kgp-m7_A_U17_C18AAAAA0070.38 AA00
1692kgp-m8_A_U17_C18NANNANT00.60 AA04
1702kgp-m9_A_U17_C18NANNANT00.60 AA08
1712kgp-m10_A_C18_A19AAAAA0870.46 AA08
1722kgp-m1_A_C18_A19AAAAA0880.45 AA08
1732kgp-m2_A_C18_A19NANNANT00.45 AA08
1742kgp-m3_A_C18_A19AAAAA0870.46 AA08
1752kgp-m4_A_C18_A19NANNANT00.45 AA08
1762kgp-m5_A_C18_A19AAAAA0880.46 AA08
1772kgp-m6_A_C18_A19AAAAA04290.50 AA04
1782kgp-m7_A_C18_A19AAAAA0880.46 AA08
1792kgp-m8_A_C18_A19NANNANT00.45 AA08
1802kgp-m9_A_C18_A19NANNANT00.45 AA08
1812kgp-m10_A_A19_C20AAAAA00200.30 AA00
1822kgp-m1_A_A19_C20AAAAA00210.32 AA00
1832kgp-m2_A_A19_C20AAAAA00200.32 AA00
1842kgp-m3_A_A19_C20AAAAA0090.30 AA00
1852kgp-m4_A_A19_C20AAAAA04470.27 AA04
1862kgp-m5_A_A19_C20AAAAA00200.34 AA00
1872kgp-m6_A_A19_C20AAAAA04440.25 AA04
1882kgp-m7_A_A19_C20AAAAA09100.37 AA09
1892kgp-m8_A_A19_C20AAAAA00100.31 AA00
1902kgp-m9_A_A19_C20AAAAA04470.26 AA04
1912kgp-m10_A_C20_A21NANNANT00.43 AA04
1922kgp-m1_A_C20_A21NANNANT00.44 AA04
1932kgp-m2_A_C20_A21NANNANT00.44 AA04
1942kgp-m3_A_C20_A21NANNANT00.46 AA04
1952kgp-m4_A_C20_A21NANNANT00.47 AA04
1962kgp-m5_A_C20_A21NANNANT00.44 AA04
1972kgp-m6_A_C20_A21NANNANT00.30 AB04
1982kgp-m7_A_C20_A21AAAAA0080.38 AA00
1992kgp-m8_A_C20_A21NANNANT00.46 AA04
2002kgp-m9_A_C20_A21NANNANT00.47 AA04
2012kgp-m10_A_A21_C22AAAAA02580.33 AA02
2022kgp-m1_A_A21_C22AAAAA02580.34 AA02
2032kgp-m2_A_A21_C22AAAAA02580.33 AA02
2042kgp-m3_A_A21_C22AAAAA02600.35 AA02
2052kgp-m4_A_A21_C22AAAAA02570.36 AA02
2062kgp-m5_A_A21_C22AAAAA02590.33 AA02
2072kgp-m6_A_A21_C22AAAAA02310.44 AA02
2082kgp-m7_A_A21_C22AAAAA02510.34 AA02
2092kgp-m8_A_A21_C22AAAAA02540.38 AA02
2102kgp-m9_A_A21_C22AAAAA02550.38 AA02
2112kgp-m10_A_C22_G23NANNANT00.54 AA04
2122kgp-m1_A_C22_G23NANNANT00.55 AA04
2132kgp-m2_A_C22_G23NANNANT00.71 BA08
2142kgp-m3_A_C22_G23NANNANT00.58 AA08
2152kgp-m4_A_C22_G23NANNANT00.70 BA08
2162kgp-m5_A_C22_G23NANNANT00.67 BA08
2172kgp-m6_A_C22_G23AAAAA04290.55 AA04
2182kgp-m7_A_C22_G23AAAAA04120.54 AA04
2192kgp-m8_A_C22_G23AAAAA0030.54 AA00
2202kgp-m9_A_C22_G23NANNANT00.62 AA08
2212kgp-m10_A_G23_U24AAAAA04310.77 AA04
2222kgp-m1_A_G23_U24AAAAA04330.76 AA04
2232kgp-m2_A_G23_U24AAAAA04320.77 AA04
2242kgp-m3_A_G23_U24AAAAA04350.77 AA04
2252kgp-m4_A_G23_U24AAAAA04340.78 AA04
2262kgp-m5_A_G23_U24AAAAA04320.77 AA04
2272kgp-m6_A_G23_U24AAAAA04410.60 AA04
2282kgp-m7_A_G23_U24NANNANT00.72 AA04
2292kgp-m8_A_G23_U24AAAAA04370.77 AA04
2302kgp-m9_A_G23_U24AAAAA04330.78 AA04
2312kgp-m10_A_U24_C25NANNANT00.47 AB04
2322kgp-m1_A_U24_C25NANNANT00.82 AA06
2332kgp-m2_A_U24_C25AAAAA03270.29 AA03
2342kgp-m3_A_U24_C25NANNANT00.52 AB04
2352kgp-m4_A_U24_C25NANNANT00.72 AA03
2362kgp-m5_A_U24_C25NANNANT00.43 AB04
2372kgp-m6_A_U24_C25NANNANT00.84 AA07
2382kgp-m7_A_U24_C25AAAAA03290.28 AA03
2392kgp-m8_A_U24_C25NANNANT00.48 AB04
2402kgp-m9_A_U24_C25NANNANT00.45 AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N