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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the third qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA

Results of the assignment of 100 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kg1-m10_B_A1_G2NANNANT01.14 BB08
0022kg1-m11_B_A1_G2NANNANT00.98 BB07
0032kg1-m12_B_A1_G2NANNANT01.18 BB08
0042kg1-m13_B_A1_G2NANNANT01.10 BB08
0052kg1-m14_B_A1_G2NANNANT01.22 BB08
0062kg1-m15_B_A1_G2NANNANT01.31 BB20
0072kg1-m16_B_A1_G2NANNANT01.01 BB07
0082kg1-m17_B_A1_G2NANNANT01.22 BB08
0092kg1-m18_B_A1_G2NANNANT00.88 BA16
0102kg1-m19_B_A1_G2NANNANT01.54 BB08
0112kg1-m1_B_A1_G2NANNANT01.27 BB08
0122kg1-m20_B_A1_G2NANNANT00.96 BA16
0132kg1-m2_B_A1_G2NANNANT01.57 BB08
0142kg1-m3_B_A1_G2NANNANT01.74 ZZS2
0152kg1-m4_B_A1_G2NANNANT01.26 BB08
0162kg1-m5_B_A1_G2NANNANT00.85 BB00
0172kg1-m6_B_A1_G2NANNANT01.18 BB08
0182kg1-m7_B_A1_G2NANNANT01.24 BB08
0192kg1-m8_B_A1_G2NANNANT01.05 BB07
0202kg1-m9_B_A1_G2NANNANT01.12 BB08
0212kg1-m10_B_G2_G3NANNANT00.86 BB10
0222kg1-m11_B_G2_G3NANNANT00.91 BB10
0232kg1-m12_B_G2_G3B-ABA17100.55 BA17
0242kg1-m13_B_G2_G3NANNANT00.96 BB10
0252kg1-m14_B_G2_G3NANNANT00.94 BB10
0262kg1-m15_B_G2_G3NANNANT00.61 BA17
0272kg1-m16_B_G2_G3NANNANT00.68 BB07
0282kg1-m17_B_G2_G3NANNANT00.92 BB10
0292kg1-m18_B_G2_G3NANNANT00.98 AB02
0302kg1-m19_B_G2_G3NANNANT01.06 AB02
0312kg1-m1_B_G2_G3NANNANT00.86 BB10
0322kg1-m20_B_G2_G3NANNANT01.17 AB02
0332kg1-m2_B_G2_G3B-ABA17440.42 BA17
0342kg1-m3_B_G2_G3NANNANT00.47 BA17
0352kg1-m4_B_G2_G3NANNANT01.03 BB10
0362kg1-m5_B_G2_G3NANNANT01.05 BB10
0372kg1-m6_B_G2_G3B-ABA17220.50 BA17
0382kg1-m7_B_G2_G3NANNANT00.90 BB10
0392kg1-m8_B_G2_G3NANNANT00.52 BA17
0402kg1-m9_B_G2_G3NANNANT00.84 BB10
0412kg1-m10_B_G3_G4NANNANT01.00 BB20
0422kg1-m11_B_G3_G4NANNANT01.28 BA17
0432kg1-m12_B_G3_G4NANNANT01.07 BB20
0442kg1-m13_B_G3_G4NANNANT01.66 BA17
0452kg1-m14_B_G3_G4NANNANT01.35 BA17
0462kg1-m15_B_G3_G4NANNANT01.11 BB20
0472kg1-m16_B_G3_G4NANNANT01.33 BA17
0482kg1-m17_B_G3_G4NANNANT01.44 BA17
0492kg1-m18_B_G3_G4NANNANT01.59 BA17
0502kg1-m19_B_G3_G4NANNANT01.71 BA17
0512kg1-m1_B_G3_G4NANNANT01.05 BB20
0522kg1-m20_B_G3_G4NANNANT01.71 BA17
0532kg1-m2_B_G3_G4NANNANT01.72 ZZ01
0542kg1-m3_B_G3_G4NANNANT01.09 BB20
0552kg1-m4_B_G3_G4NANNANT01.05 BB20
0562kg1-m5_B_G3_G4NANNANT01.65 OP24
0572kg1-m6_B_G3_G4NANNANT01.08 BB20
0582kg1-m7_B_G3_G4NANNANT01.42 BA17
0592kg1-m8_B_G3_G4NANNANT01.26 BB07
0602kg1-m9_B_G3_G4NANNANT01.43 BA17
0612kg1-m10_B_G4_A5NANNANT01.49 BA09
0622kg1-m11_B_G4_A5NANNANT01.41 AA01
0632kg1-m12_B_G4_A5NANNANT01.30 AA01
0642kg1-m13_B_G4_A5NANNANT01.31 BB1S
0652kg1-m14_B_G4_A5NANNANT01.41 AA01
0662kg1-m15_B_G4_A5NANNANT01.44 BA10
0672kg1-m16_B_G4_A5NANNANT01.44 AA01
0682kg1-m17_B_G4_A5NANNANT01.28 AA01
0692kg1-m18_B_G4_A5NANNANT01.49 BA09
0702kg1-m19_B_G4_A5NANNANT01.11 OP08
0712kg1-m1_B_G4_A5NANNANT01.32 AA01
0722kg1-m20_B_G4_A5NANNANT01.18 OP08
0732kg1-m2_B_G4_A5NANNANT01.28 AA01
0742kg1-m3_B_G4_A5NANNANT01.34 AA01
0752kg1-m4_B_G4_A5NANNANT01.53 BA09
0762kg1-m5_B_G4_A5NANNANT01.40 AA01
0772kg1-m6_B_G4_A5NANNANT01.58 BA09
0782kg1-m7_B_G4_A5NANNANT01.29 AA01
0792kg1-m8_B_G4_A5NANNANT01.41 BA10
0802kg1-m9_B_G4_A5NANNANT01.32 AA01
0812kg1-m10_B_A5_U6NANNANT01.84 AB02
0822kg1-m11_B_A5_U6NANNANT01.92 AB02
0832kg1-m12_B_A5_U6NANNANT01.96 AB02
0842kg1-m13_B_A5_U6NANNANT01.85 AB02
0852kg1-m14_B_A5_U6NANNANT01.94 AB02
0862kg1-m15_B_A5_U6NANNANT01.92 AB02
0872kg1-m16_B_A5_U6NANNANT01.97 AB02
0882kg1-m17_B_A5_U6NANNANT01.92 AB02
0892kg1-m18_B_A5_U6NANNANT01.84 AB02
0902kg1-m19_B_A5_U6NANNANT01.82 AB02
0912kg1-m1_B_A5_U6NANNANT01.91 AB02
0922kg1-m20_B_A5_U6NANNANT01.82 AB02
0932kg1-m2_B_A5_U6NANNANT01.95 AB02
0942kg1-m3_B_A5_U6NANNANT01.91 AB02
0952kg1-m4_B_A5_U6NANNANT01.86 AB02
0962kg1-m5_B_A5_U6NANNANT01.90 AB02
0972kg1-m6_B_A5_U6NANNANT01.86 AB02
0982kg1-m7_B_A5_U6NANNANT01.93 AB02
0992kg1-m8_B_A5_U6NANNANT01.92 AB02
1002kg1-m9_B_A5_U6NANNANT01.93 AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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