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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR structure of U6 ISL at pH 7.0

Results of the assignment of 230 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kf0-m10_A_G1_G2NANNANT00.49 AA00
0022kf0-m1_A_G1_G2NANNANT00.53 AA04
0032kf0-m2_A_G1_G2NANNANT00.56 AA08
0042kf0-m3_A_G1_G2NANNANT00.55 AA04
0052kf0-m4_A_G1_G2NANNANT00.55 AA04
0062kf0-m5_A_G1_G2NANNANT00.45 AA08
0072kf0-m6_A_G1_G2NANNANT00.54 AA04
0082kf0-m7_A_G1_G2NANNANT00.54 AA04
0092kf0-m8_A_G1_G2NANNANT00.53 AA04
0102kf0-m9_A_G1_G2NANNANT00.54 AA08
0112kf0-m10_A_G2_U3AAAAA00840.22 AA00
0122kf0-m1_A_G2_U3AAAAA00840.22 AA00
0132kf0-m2_A_G2_U3AAAAA00780.25 AA00
0142kf0-m3_A_G2_U3AAAAA00810.23 AA00
0152kf0-m4_A_G2_U3AAAAA00820.22 AA00
0162kf0-m5_A_G2_U3AAAAA00840.22 AA00
0172kf0-m6_A_G2_U3AAAAA00800.23 AA00
0182kf0-m7_A_G2_U3AAAAA00820.22 AA00
0192kf0-m8_A_G2_U3AAAAA00830.22 AA00
0202kf0-m9_A_G2_U3AAAAA00720.27 AA00
0212kf0-m10_A_U3_U4AAAAA00660.21 AA00
0222kf0-m1_A_U3_U4AAAAA00650.22 AA00
0232kf0-m2_A_U3_U4AAAAA00640.27 AA00
0242kf0-m3_A_U3_U4AAAAA00630.23 AA00
0252kf0-m4_A_U3_U4AAAAA00680.20 AA00
0262kf0-m5_A_U3_U4AAAAA00650.22 AA00
0272kf0-m6_A_U3_U4AAAAA00630.22 AA00
0282kf0-m7_A_U3_U4AAAAA00650.22 AA00
0292kf0-m8_A_U3_U4AAAAA00660.22 AA00
0302kf0-m9_A_U3_U4AAAAA00620.28 AA00
0312kf0-m10_A_U4_C5AAAAA00590.18 AA00
0322kf0-m1_A_U4_C5AAAAA00600.20 AA00
0332kf0-m2_A_U4_C5AAAAA00580.20 AA00
0342kf0-m3_A_U4_C5AAAAA00550.19 AA00
0352kf0-m4_A_U4_C5AAAAA00590.18 AA00
0362kf0-m5_A_U4_C5AAAAA00570.19 AA00
0372kf0-m6_A_U4_C5AAAAA00540.19 AA00
0382kf0-m7_A_U4_C5AAAAA00570.19 AA00
0392kf0-m8_A_U4_C5AAAAA00580.19 AA00
0402kf0-m9_A_U4_C5AAAAA00550.21 AA00
0412kf0-m10_A_C5_C6AAAAA00640.37 AA00
0422kf0-m1_A_C5_C6AAAAA00670.31 AA00
0432kf0-m2_A_C5_C6AAAAA00570.36 AA00
0442kf0-m3_A_C5_C6AAAAA00550.37 AA00
0452kf0-m4_A_C5_C6AAAAA00600.39 AA00
0462kf0-m5_A_C5_C6AAAAA00550.40 AA00
0472kf0-m6_A_C5_C6AAAAA00580.37 AA00
0482kf0-m7_A_C5_C6AAAAA00550.40 AA00
0492kf0-m8_A_C5_C6AAAAA00590.34 AA00
0502kf0-m9_A_C5_C6AAAAA00560.32 AA00
0512kf0-m10_A_C6_C7AAAAA00570.26 AA00
0522kf0-m1_A_C6_C7AAAAA00580.27 AA00
0532kf0-m2_A_C6_C7AAAAA00570.26 AA00
0542kf0-m3_A_C6_C7AAAAA00600.25 AA00
0552kf0-m4_A_C6_C7AAAAA00580.26 AA00
0562kf0-m5_A_C6_C7AAAAA00590.24 AA00
0572kf0-m6_A_C6_C7AAAAA00590.25 AA00
0582kf0-m7_A_C6_C7AAAAA00580.25 AA00
0592kf0-m8_A_C6_C7AAAAA00590.26 AA00
0602kf0-m9_A_C6_C7AAAAA00580.26 AA00
0612kf0-m10_A_C7_C8AAAAA00490.29 AA00
0622kf0-m1_A_C7_C8AAAAA00500.29 AA00
0632kf0-m2_A_C7_C8AAAAA00590.23 AA00
0642kf0-m3_A_C7_C8AAAAA00570.25 AA00
0652kf0-m4_A_C7_C8AAAAA00570.24 AA00
0662kf0-m5_A_C7_C8AAAAA00570.25 AA00
0672kf0-m6_A_C7_C8AAAAA00570.24 AA00
0682kf0-m7_A_C7_C8AAAAA00570.24 AA00
0692kf0-m8_A_C7_C8AAAAA00590.23 AA00
0702kf0-m9_A_C7_C8AAAAA00510.28 AA00
0712kf0-m10_A_C8_U9AAAAA00700.20 AA00
0722kf0-m1_A_C8_U9AAAAA00740.21 AA00
0732kf0-m2_A_C8_U9AAAAA00850.20 AA00
0742kf0-m3_A_C8_U9AAAAA00840.20 AA00
0752kf0-m4_A_C8_U9AAAAA00840.19 AA00
0762kf0-m5_A_C8_U9AAAAA00860.20 AA00
0772kf0-m6_A_C8_U9AAAAA00840.20 AA00
0782kf0-m7_A_C8_U9AAAAA00830.19 AA00
0792kf0-m8_A_C8_U9AAAAA00850.21 AA00
0802kf0-m9_A_C8_U9AAAAA00770.19 AA00
0812kf0-m10_A_U9_G10AAAAA09220.40 AA09
0822kf0-m1_A_U9_G10AAAAA09210.40 AA09
0832kf0-m2_A_U9_G10AAAAA04350.44 AA04
0842kf0-m3_A_U9_G10AAAAA04330.44 AA04
0852kf0-m4_A_U9_G10AAAAA04330.45 AA04
0862kf0-m5_A_U9_G10AAAAA04330.45 AA04
0872kf0-m6_A_U9_G10AAAAA04320.44 AA04
0882kf0-m7_A_U9_G10AAAAA04320.44 AA04
0892kf0-m8_A_U9_G10AAAAA09200.45 AA09
0902kf0-m9_A_U9_G10AAAAA04350.44 AA04
0912kf0-m10_A_G10_C11NANNANT00.77 OP03
0922kf0-m1_A_G10_C11NANNANT00.77 OP03
0932kf0-m2_A_G10_C11NANNANT00.67 OP03
0942kf0-m3_A_G10_C11NANNANT00.67 OP03
0952kf0-m4_A_G10_C11NANNANT00.67 OP03
0962kf0-m5_A_G10_C11NANNANT00.66 OP03
0972kf0-m6_A_G10_C11NANNANT00.67 OP03
0982kf0-m7_A_G10_C11NANNANT00.67 OP03
0992kf0-m8_A_G10_C11NANNANT00.68 OP03
1002kf0-m9_A_G10_C11NANNANT00.81 OP03
1012kf0-m10_A_C11_A12NANNANT00.61 AB04
1022kf0-m1_A_C11_A12NANNANT00.64 AB04
1032kf0-m2_A_C11_A12NANNANT00.66 AB04
1042kf0-m3_A_C11_A12NANNANT00.66 AB04
1052kf0-m4_A_C11_A12NANNANT00.67 AB04
1062kf0-m5_A_C11_A12NANNANT00.66 AB04
1072kf0-m6_A_C11_A12NANNANT00.66 AB04
1082kf0-m7_A_C11_A12NANNANT00.67 AB04
1092kf0-m8_A_C11_A12NANNANT00.60 AB04
1102kf0-m9_A_C11_A12NANNANT00.57 AB04
1112kf0-m10_A_A12_U13NANNANT01.23 BB15
1122kf0-m1_A_A12_U13NANNANT01.25 BB15
1132kf0-m2_A_A12_U13NANNANT01.42 BB00
1142kf0-m3_A_A12_U13NANNANT01.42 BB00
1152kf0-m4_A_A12_U13NANNANT01.41 BB00
1162kf0-m5_A_A12_U13NANNANT01.42 BB00
1172kf0-m6_A_A12_U13NANNANT01.39 AA12
1182kf0-m7_A_A12_U13NANNANT01.42 BB00
1192kf0-m8_A_A12_U13NANNANT02.35 IC04
1202kf0-m9_A_A12_U13NANNANT01.33 BB00
1212kf0-m10_A_U13_A14NANNANT01.71 OP23
1222kf0-m1_A_U13_A14NANNANT01.73 OP23
1232kf0-m2_A_U13_A14NANNANT00.63 OP12
1242kf0-m3_A_U13_A14NANNANT00.63 OP12
1252kf0-m4_A_U13_A14NANNANT00.63 OP12
1262kf0-m5_A_U13_A14NANNANT00.62 OP12
1272kf0-m6_A_U13_A14NANNANT00.64 OP12
1282kf0-m7_A_U13_A14NANNANT00.63 OP12
1292kf0-m8_A_U13_A14OPNOP11160.74 OP11
1302kf0-m9_A_U13_A14NANNANT01.40 BB12
1312kf0-m10_A_A14_A15NANNANT00.61 AA09
1322kf0-m1_A_A14_A15NANNANT00.62 AA09
1332kf0-m2_A_A14_A15AAAAA04140.50 AA04
1342kf0-m3_A_A14_A15AAAAA04140.50 AA04
1352kf0-m4_A_A14_A15AAAAA04130.50 AA04
1362kf0-m5_A_A14_A15AAAAA04140.50 AA04
1372kf0-m6_A_A14_A15AAAAA04140.50 AA04
1382kf0-m7_A_A14_A15AAAAA04140.51 AA04
1392kf0-m8_A_A14_A15AAAAA04140.52 AA04
1402kf0-m9_A_A14_A15NANNANT00.64 AA00
1412kf0-m10_A_A15_G16AAAAA00400.23 AA00
1422kf0-m1_A_A15_G16AAAAA00410.23 AA00
1432kf0-m2_A_A15_G16AAAAA00470.24 AA00
1442kf0-m3_A_A15_G16AAAAA00440.24 AA00
1452kf0-m4_A_A15_G16AAAAA00440.23 AA00
1462kf0-m5_A_A15_G16AAAAA00450.23 AA00
1472kf0-m6_A_A15_G16AAAAA00450.24 AA00
1482kf0-m7_A_A15_G16AAAAA00450.23 AA00
1492kf0-m8_A_A15_G16AAAAA00450.24 AA00
1502kf0-m9_A_A15_G16AAAAA00400.23 AA00
1512kf0-m10_A_G16_G17AAAAA00490.28 AA00
1522kf0-m1_A_G16_G17AAAAA00520.29 AA00
1532kf0-m2_A_G16_G17AAAAA00570.29 AA00
1542kf0-m3_A_G16_G17AAAAA00550.29 AA00
1552kf0-m4_A_G16_G17AAAAA00540.29 AA00
1562kf0-m5_A_G16_G17AAAAA00560.29 AA00
1572kf0-m6_A_G16_G17AAAAA00570.30 AA00
1582kf0-m7_A_G16_G17AAAAA00560.29 AA00
1592kf0-m8_A_G16_G17AAAAA00580.30 AA00
1602kf0-m9_A_G16_G17AAAAA00480.28 AA00
1612kf0-m10_A_G17_A18AAAAA00730.22 AA00
1622kf0-m1_A_G17_A18AAAAA00730.20 AA00
1632kf0-m2_A_G17_A18AAAAA00760.20 AA00
1642kf0-m3_A_G17_A18AAAAA00760.21 AA00
1652kf0-m4_A_G17_A18AAAAA00720.23 AA00
1662kf0-m5_A_G17_A18AAAAA00750.21 AA00
1672kf0-m6_A_G17_A18AAAAA00760.19 AA00
1682kf0-m7_A_G17_A18AAAAA00720.22 AA00
1692kf0-m8_A_G17_A18AAAAA00730.20 AA00
1702kf0-m9_A_G17_A18AAAAA00740.19 AA00
1712kf0-m10_A_A18_U19AAAAA00190.48 AA00
1722kf0-m1_A_A18_U19AAAAA00180.46 AA00
1732kf0-m2_A_A18_U19AAAAA00210.45 AA00
1742kf0-m3_A_A18_U19AAAAA00160.47 AA00
1752kf0-m4_A_A18_U19AAAAA00180.49 AA00
1762kf0-m5_A_A18_U19AAAAA00160.49 AA00
1772kf0-m6_A_A18_U19AAAAA00180.47 AA00
1782kf0-m7_A_A18_U19AAAAA00180.49 AA00
1792kf0-m8_A_A18_U19AAAAA00230.43 AA00
1802kf0-m9_A_A18_U19AAAAA00250.41 AA00
1812kf0-m10_A_U19_G20AAAAA00470.17 AA00
1822kf0-m1_A_U19_G20AAAAA00490.16 AA00
1832kf0-m2_A_U19_G20AAAAA00470.19 AA00
1842kf0-m3_A_U19_G20AAAAA00380.18 AA00
1852kf0-m4_A_U19_G20AAAAA00510.17 AA00
1862kf0-m5_A_U19_G20AAAAA00500.15 AA00
1872kf0-m6_A_U19_G20AAAAA00540.15 AA00
1882kf0-m7_A_U19_G20AAAAA00500.18 AA00
1892kf0-m8_A_U19_G20AAAAA00440.17 AA00
1902kf0-m9_A_U19_G20AAAAA00460.20 AA00
1912kf0-m10_A_G20_A21AAAAA00880.11 AA00
1922kf0-m1_A_G20_A21AAAAA00870.12 AA00
1932kf0-m2_A_G20_A21AAAAA00920.09 AA00
1942kf0-m3_A_G20_A21AAAAA00870.11 AA00
1952kf0-m4_A_G20_A21AAAAA00880.11 AA00
1962kf0-m5_A_G20_A21AAAAA00880.11 AA00
1972kf0-m6_A_G20_A21AAAAA00910.10 AA00
1982kf0-m7_A_G20_A21AAAAA00890.11 AA00
1992kf0-m8_A_G20_A21AAAAA00870.12 AA00
2002kf0-m9_A_G20_A21AAAAA00890.11 AA00
2012kf0-m10_A_A21_A22AAAAA00960.09 AA00
2022kf0-m1_A_A21_A22AAAAA00950.10 AA00
2032kf0-m2_A_A21_A22AAAAA00940.12 AA00
2042kf0-m3_A_A21_A22AAAAA00950.10 AA00
2052kf0-m4_A_A21_A22AAAAA00960.10 AA00
2062kf0-m5_A_A21_A22AAAAA00960.10 AA00
2072kf0-m6_A_A21_A22AAAAA00960.10 AA00
2082kf0-m7_A_A21_A22AAAAA00960.10 AA00
2092kf0-m8_A_A21_A22AAAAA00960.10 AA00
2102kf0-m9_A_A21_A22AAAAA00930.13 AA00
2112kf0-m10_A_A22_C23AAAAA00950.12 AA00
2122kf0-m1_A_A22_C23AAAAA00950.13 AA00
2132kf0-m2_A_A22_C23AAAAA00960.14 AA00
2142kf0-m3_A_A22_C23AAAAA00960.13 AA00
2152kf0-m4_A_A22_C23AAAAA00960.13 AA00
2162kf0-m5_A_A22_C23AAAAA00950.13 AA00
2172kf0-m6_A_A22_C23AAAAA00950.13 AA00
2182kf0-m7_A_A22_C23AAAAA00960.12 AA00
2192kf0-m8_A_A22_C23AAAAA00960.12 AA00
2202kf0-m9_A_A22_C23AAAAA00950.14 AA00
2212kf0-m10_A_C23_C24AAAAA00890.18 AA00
2222kf0-m1_A_C23_C24AAAAA00880.18 AA00
2232kf0-m2_A_C23_C24AAAAA00760.24 AA00
2242kf0-m3_A_C23_C24AAAAA00870.20 AA00
2252kf0-m4_A_C23_C24AAAAA00890.18 AA00
2262kf0-m5_A_C23_C24AAAAA00880.19 AA00
2272kf0-m6_A_C23_C24AAAAA00860.19 AA00
2282kf0-m7_A_C23_C24AAAAA00870.19 AA00
2292kf0-m8_A_C23_C24AAAAA00850.20 AA00
2302kf0-m9_A_C23_C24AAAAA00770.23 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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