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Conformers: ABBIImiBZICOPNSYNN
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NMR structure of U6 ISL at pH 8.0

Results of the assignment of 230 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012kez-m10_A_G1_G2NANNANT00.54 AA04
0022kez-m1_A_G1_G2NANNANT00.54 AA04
0032kez-m2_A_G1_G2NANNANT00.55 AA08
0042kez-m3_A_G1_G2NANNANT00.55 AA08
0052kez-m4_A_G1_G2NANNANT00.55 AA08
0062kez-m5_A_G1_G2NANNANT00.56 AA04
0072kez-m6_A_G1_G2NANNANT00.54 AA04
0082kez-m7_A_G1_G2NANNANT00.56 AA04
0092kez-m8_A_G1_G2NANNANT00.56 AA08
0102kez-m9_A_G1_G2NANNANT00.57 AA04
0112kez-m10_A_G2_U3AAAAA00860.20 AA00
0122kez-m1_A_G2_U3AAAAA00860.21 AA00
0132kez-m2_A_G2_U3AAAAA00830.23 AA00
0142kez-m3_A_G2_U3AAAAA00750.25 AA00
0152kez-m4_A_G2_U3AAAAA00820.22 AA00
0162kez-m5_A_G2_U3AAAAA00870.20 AA00
0172kez-m6_A_G2_U3AAAAA00820.23 AA00
0182kez-m7_A_G2_U3AAAAA00850.21 AA00
0192kez-m8_A_G2_U3AAAAA00820.23 AA00
0202kez-m9_A_G2_U3AAAAA00820.22 AA00
0212kez-m10_A_U3_U4AAAAA00550.23 AA00
0222kez-m1_A_U3_U4AAAAA00530.24 AA00
0232kez-m2_A_U3_U4AAAAA00650.22 AA00
0242kez-m3_A_U3_U4AAAAA00580.23 AA00
0252kez-m4_A_U3_U4AAAAA00640.22 AA00
0262kez-m5_A_U3_U4AAAAA00660.21 AA00
0272kez-m6_A_U3_U4AAAAA00560.24 AA00
0282kez-m7_A_U3_U4AAAAA00620.23 AA00
0292kez-m8_A_U3_U4AAAAA00570.24 AA00
0302kez-m9_A_U3_U4AAAAA00540.23 AA00
0312kez-m10_A_U4_C5AAAAA00490.20 AA00
0322kez-m1_A_U4_C5AAAAA00460.20 AA00
0332kez-m2_A_U4_C5AAAAA00600.19 AA00
0342kez-m3_A_U4_C5AAAAA00510.19 AA00
0352kez-m4_A_U4_C5AAAAA00570.19 AA00
0362kez-m5_A_U4_C5AAAAA00580.18 AA00
0372kez-m6_A_U4_C5AAAAA00520.19 AA00
0382kez-m7_A_U4_C5AAAAA00570.19 AA00
0392kez-m8_A_U4_C5AAAAA00510.20 AA00
0402kez-m9_A_U4_C5AAAAA00480.20 AA00
0412kez-m10_A_C5_C6AAAAA00530.29 AA00
0422kez-m1_A_C5_C6AAAAA00480.29 AA00
0432kez-m2_A_C5_C6AAAAA00640.26 AA00
0442kez-m3_A_C5_C6AAAAA00540.25 AA00
0452kez-m4_A_C5_C6AAAAA00620.24 AA00
0462kez-m5_A_C5_C6AAAAA00640.22 AA00
0472kez-m6_A_C5_C6AAAAA00530.27 AA00
0482kez-m7_A_C5_C6AAAAA00620.26 AA00
0492kez-m8_A_C5_C6AAAAA00520.29 AA00
0502kez-m9_A_C5_C6AAAAA00530.27 AA00
0512kez-m10_A_C6_C7AAAAA00150.46 AA00
0522kez-m1_A_C6_C7AAAAA00200.45 AA00
0532kez-m2_A_C6_C7AAAAA00330.42 AA00
0542kez-m3_A_C6_C7AAAAA00220.46 AA00
0552kez-m4_A_C6_C7AAAAA00270.45 AA00
0562kez-m5_A_C6_C7AAAAA00290.46 AA00
0572kez-m6_A_C6_C7AAAAA00200.47 AA00
0582kez-m7_A_C6_C7AAAAA00260.45 AA00
0592kez-m8_A_C6_C7AAAAA00230.43 AA00
0602kez-m9_A_C6_C7AAAAA00190.46 AA00
0612kez-m10_A_C7_C8AAAAA00630.26 AA00
0622kez-m1_A_C7_C8AAAAA00640.24 AA00
0632kez-m2_A_C7_C8AAAAA00670.26 AA00
0642kez-m3_A_C7_C8AAAAA00720.22 AA00
0652kez-m4_A_C7_C8AAAAA00700.24 AA00
0662kez-m5_A_C7_C8AAAAA00730.23 AA00
0672kez-m6_A_C7_C8AAAAA00710.23 AA00
0682kez-m7_A_C7_C8AAAAA00680.24 AA00
0692kez-m8_A_C7_C8AAAAA00660.25 AA00
0702kez-m9_A_C7_C8AAAAA00590.27 AA00
0712kez-m10_A_C8_U9AAAAA00820.19 AA00
0722kez-m1_A_C8_U9AAAAA00860.22 AA00
0732kez-m2_A_C8_U9AAAAA00850.21 AA00
0742kez-m3_A_C8_U9AAAAA00840.22 AA00
0752kez-m4_A_C8_U9AAAAA00880.20 AA00
0762kez-m5_A_C8_U9AAAAA00850.19 AA00
0772kez-m6_A_C8_U9AAAAA00840.22 AA00
0782kez-m7_A_C8_U9AAAAA00870.21 AA00
0792kez-m8_A_C8_U9AAAAA00860.22 AA00
0802kez-m9_A_C8_U9AAAAA00810.18 AA00
0812kez-m10_A_U9_G10AAAAA00190.39 AA00
0822kez-m1_A_U9_G10AAAAA00200.39 AA00
0832kez-m2_A_U9_G10AAAAA00260.36 AA00
0842kez-m3_A_U9_G10AAAAA04270.48 AA04
0852kez-m4_A_U9_G10AAAAA00250.40 AA00
0862kez-m5_A_U9_G10AAAAA00220.40 AA00
0872kez-m6_A_U9_G10AAAAA09230.38 AA09
0882kez-m7_A_U9_G10AAAAA00240.40 AA00
0892kez-m8_A_U9_G10AAAAA00200.42 AA00
0902kez-m9_A_U9_G10AAAAA00370.41 AA00
0912kez-m10_A_G10_C11NANNANT00.65 OP03
0922kez-m1_A_G10_C11NANNANT00.65 OP03
0932kez-m2_A_G10_C11NANNANT00.58 OP03
0942kez-m3_A_G10_C11NANNANT02.64 IC04
0952kez-m4_A_G10_C11NANNANT00.95 OP03
0962kez-m5_A_G10_C11NANNANT00.96 OP03
0972kez-m6_A_G10_C11NANNANT00.64 OP03
0982kez-m7_A_G10_C11NANNANT00.94 OP03
0992kez-m8_A_G10_C11NANNANT00.84 OP03
1002kez-m9_A_G10_C11NANNANT00.62 OP09
1012kez-m10_A_C11_A12NANNANT00.52 AB04
1022kez-m1_A_C11_A12A-BAB04380.45 AB04
1032kez-m2_A_C11_A12A-BAB04350.53 AB04
1042kez-m3_A_C11_A12NANNANT01.14 OP20
1052kez-m4_A_C11_A12A-BAB04560.49 AB04
1062kez-m5_A_C11_A12A-BAB04550.49 AB04
1072kez-m6_A_C11_A12NANNANT00.64 AB04
1082kez-m7_A_C11_A12A-BAB04490.51 AB04
1092kez-m8_A_C11_A12NANNANT00.51 AA00
1102kez-m9_A_C11_A12NANNANT01.01 IC01
1112kez-m10_A_A12_U13NANNANT01.62 AA12
1122kez-m1_A_A12_U13NANNANT01.76 BB02
1132kez-m2_A_A12_U13NANNANT01.06 OP09
1142kez-m3_A_A12_U13NANNANT01.41 BB00
1152kez-m4_A_A12_U13NANNANT01.33 BB00
1162kez-m5_A_A12_U13NANNANT01.35 BB00
1172kez-m6_A_A12_U13NANNANT01.40 BB00
1182kez-m7_A_A12_U13NANNANT01.34 BB00
1192kez-m8_A_A12_U13NANNANT01.13 AA12
1202kez-m9_A_A12_U13NANNANT01.52 BB00
1212kez-m10_A_U13_A14NANNANT00.62 IC06
1222kez-m1_A_U13_A14NANNANT00.61 OP12
1232kez-m2_A_U13_A14NANNANT00.94 OP20
1242kez-m3_A_U13_A14NANNANT01.58 OP23
1252kez-m4_A_U13_A14NANNANT01.36 BB12
1262kez-m5_A_U13_A14NANNANT01.67 OP23
1272kez-m6_A_U13_A14NANNANT00.89 OP12
1282kez-m7_A_U13_A14NANNANT01.38 BB12
1292kez-m8_A_U13_A14NANNANT01.67 OP23
1302kez-m9_A_U13_A14NANNANT01.55 OP23
1312kez-m10_A_A14_A15NANNANT00.78 AA00
1322kez-m1_A_A14_A15NANNANT00.51 AA00
1332kez-m2_A_A14_A15AAAAA04230.41 AA04
1342kez-m3_A_A14_A15NANNANT00.53 AA00
1352kez-m4_A_A14_A15NANNANT00.53 AA00
1362kez-m5_A_A14_A15NANNANT00.51 AA00
1372kez-m6_A_A14_A15NANNANT00.59 AA00
1382kez-m7_A_A14_A15NANNANT00.48 AA08
1392kez-m8_A_A14_A15NANNANT00.85 BA01
1402kez-m9_A_A14_A15NANNANT00.80 BA01
1412kez-m10_A_A15_G16AAAAA00310.23 AA00
1422kez-m1_A_A15_G16AAAAA00370.26 AA00
1432kez-m2_A_A15_G16AAAAA00480.25 AA00
1442kez-m3_A_A15_G16AAAAA00400.26 AA00
1452kez-m4_A_A15_G16AAAAA00430.25 AA00
1462kez-m5_A_A15_G16AAAAA00440.24 AA00
1472kez-m6_A_A15_G16AAAAA00370.26 AA00
1482kez-m7_A_A15_G16AAAAA00420.26 AA00
1492kez-m8_A_A15_G16AAAAA00320.25 AA00
1502kez-m9_A_A15_G16AAAAA00210.26 AA00
1512kez-m10_A_G16_G17AAAAA00520.28 AA00
1522kez-m1_A_G16_G17AAAAA00550.28 AA00
1532kez-m2_A_G16_G17AAAAA00590.28 AA00
1542kez-m3_A_G16_G17AAAAA00570.28 AA00
1552kez-m4_A_G16_G17AAAAA00560.28 AA00
1562kez-m5_A_G16_G17AAAAA00560.27 AA00
1572kez-m6_A_G16_G17AAAAA00540.28 AA00
1582kez-m7_A_G16_G17AAAAA00550.28 AA00
1592kez-m8_A_G16_G17AAAAA00560.28 AA00
1602kez-m9_A_G16_G17AAAAA00460.28 AA00
1612kez-m10_A_G17_A18AAAAA00830.15 AA00
1622kez-m1_A_G17_A18AAAAA00820.15 AA00
1632kez-m2_A_G17_A18AAAAA00800.16 AA00
1642kez-m3_A_G17_A18AAAAA00780.15 AA00
1652kez-m4_A_G17_A18AAAAA00800.16 AA00
1662kez-m5_A_G17_A18AAAAA00780.18 AA00
1672kez-m6_A_G17_A18AAAAA00790.19 AA00
1682kez-m7_A_G17_A18AAAAA00790.16 AA00
1692kez-m8_A_G17_A18AAAAA00830.16 AA00
1702kez-m9_A_G17_A18AAAAA00810.17 AA00
1712kez-m10_A_A18_U19AAAAA00220.33 AA00
1722kez-m1_A_A18_U19AAAAA00190.36 AA00
1732kez-m2_A_A18_U19AAAAA00190.40 AA00
1742kez-m3_A_A18_U19AAAAA00170.38 AA00
1752kez-m4_A_A18_U19AAAAA00180.39 AA00
1762kez-m5_A_A18_U19AAAAA00480.28 AA00
1772kez-m6_A_A18_U19AAAAA00380.27 AA00
1782kez-m7_A_A18_U19AAAAA00180.40 AA00
1792kez-m8_A_A18_U19AAAAA00180.35 AA00
1802kez-m9_A_A18_U19AAAAA00150.42 AA00
1812kez-m10_A_U19_G20AAAAA00250.28 AA00
1822kez-m1_A_U19_G20AAAAA00230.26 AA00
1832kez-m2_A_U19_G20AAAAA00340.23 AA00
1842kez-m3_A_U19_G20AAAAA00280.24 AA00
1852kez-m4_A_U19_G20AAAAA00330.22 AA00
1862kez-m5_A_U19_G20AAAAA00540.16 AA00
1872kez-m6_A_U19_G20AAAAA00360.23 AA00
1882kez-m7_A_U19_G20AAAAA00360.22 AA00
1892kez-m8_A_U19_G20AAAAA00230.28 AA00
1902kez-m9_A_U19_G20AAAAA00280.21 AA00
1912kez-m10_A_G20_A21AAAAA00630.15 AA00
1922kez-m1_A_G20_A21AAAAA00640.15 AA00
1932kez-m2_A_G20_A21AAAAA00730.14 AA00
1942kez-m3_A_G20_A21AAAAA00620.15 AA00
1952kez-m4_A_G20_A21AAAAA00710.14 AA00
1962kez-m5_A_G20_A21AAAAA00830.11 AA00
1972kez-m6_A_G20_A21AAAAA00680.14 AA00
1982kez-m7_A_G20_A21AAAAA00760.12 AA00
1992kez-m8_A_G20_A21AAAAA00660.15 AA00
2002kez-m9_A_G20_A21AAAAA00660.15 AA00
2012kez-m10_A_A21_A22AAAAA00880.10 AA00
2022kez-m1_A_A21_A22AAAAA00880.10 AA00
2032kez-m2_A_A21_A22AAAAA00930.09 AA00
2042kez-m3_A_A21_A22AAAAA00860.10 AA00
2052kez-m4_A_A21_A22AAAAA00920.09 AA00
2062kez-m5_A_A21_A22AAAAA00950.08 AA00
2072kez-m6_A_A21_A22AAAAA00900.09 AA00
2082kez-m7_A_A21_A22AAAAA00940.08 AA00
2092kez-m8_A_A21_A22AAAAA00900.09 AA00
2102kez-m9_A_A21_A22AAAAA00860.10 AA00
2112kez-m10_A_A22_C23AAAAA00920.12 AA00
2122kez-m1_A_A22_C23AAAAA00920.12 AA00
2132kez-m2_A_A22_C23AAAAA00940.12 AA00
2142kez-m3_A_A22_C23AAAAA00930.13 AA00
2152kez-m4_A_A22_C23AAAAA00940.12 AA00
2162kez-m5_A_A22_C23AAAAA00940.12 AA00
2172kez-m6_A_A22_C23AAAAA00930.12 AA00
2182kez-m7_A_A22_C23AAAAA00940.12 AA00
2192kez-m8_A_A22_C23AAAAA00930.12 AA00
2202kez-m9_A_A22_C23AAAAA00910.13 AA00
2212kez-m10_A_C23_C24AAAAA00480.32 AA00
2222kez-m1_A_C23_C24AAAAA00410.34 AA00
2232kez-m2_A_C23_C24AAAAA00470.32 AA00
2242kez-m3_A_C23_C24AAAAA00360.35 AA00
2252kez-m4_A_C23_C24AAAAA00430.33 AA00
2262kez-m5_A_C23_C24AAAAA00480.32 AA00
2272kez-m6_A_C23_C24AAAAA00440.33 AA00
2282kez-m7_A_C23_C24AAAAA00440.33 AA00
2292kez-m8_A_C23_C24AAAAA00400.34 AA00
2302kez-m9_A_C23_C24AAAAA00380.34 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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