DNATCO v4.1: results

Solution structure of the stem-loop IIId of GBV-B IRES

Results of the assignment of 252 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2kd8-m10_A_G1_G2	AAA	AA00	79	0.25	AA00
002	2kd8-m11_A_G1_G2	AAA	AA00	74	0.19	AA00
003	2kd8-m12_A_G1_G2	AAA	AA00	75	0.20	AA00
004	2kd8-m1_A_G1_G2	AAA	AA00	89	0.19	AA00
005	2kd8-m2_A_G1_G2	AAA	AA00	68	0.23	AA00
006	2kd8-m3_A_G1_G2	AAA	AA00	81	0.22	AA00
007	2kd8-m4_A_G1_G2	AAA	AA00	45	0.36	AA00
008	2kd8-m5_A_G1_G2	AAA	AA00	86	0.14	AA00
009	2kd8-m6_A_G1_G2	AAA	AA00	76	0.23	AA00
010	2kd8-m7_A_G1_G2	AAA	AA00	70	0.32	AA00
011	2kd8-m8_A_G1_G2	AAA	AA00	81	0.18	AA00
012	2kd8-m9_A_G1_G2	AAA	AA00	84	0.17	AA00
013	2kd8-m10_A_G2_A3	AAA	AA00	81	0.16	AA00
014	2kd8-m11_A_G2_A3	AAA	AA00	82	0.20	AA00
015	2kd8-m12_A_G2_A3	AAA	AA00	67	0.24	AA00
016	2kd8-m1_A_G2_A3	AAA	AA00	87	0.16	AA00
017	2kd8-m2_A_G2_A3	AAA	AA00	69	0.23	AA00
018	2kd8-m3_A_G2_A3	AAA	AA00	75	0.20	AA00
019	2kd8-m4_A_G2_A3	AAA	AA00	83	0.17	AA00
020	2kd8-m5_A_G2_A3	AAA	AA00	87	0.16	AA00
021	2kd8-m6_A_G2_A3	AAA	AA00	78	0.18	AA00
022	2kd8-m7_A_G2_A3	AAA	AA00	85	0.17	AA00
023	2kd8-m8_A_G2_A3	AAA	AA00	90	0.11	AA00
024	2kd8-m9_A_G2_A3	AAA	AA00	85	0.14	AA00
025	2kd8-m10_A_A3_U4	AAA	AA00	87	0.20	AA00
026	2kd8-m11_A_A3_U4	AAA	AA00	78	0.19	AA00
027	2kd8-m12_A_A3_U4	AAA	AA00	45	0.33	AA00
028	2kd8-m1_A_A3_U4	AAA	AA00	87	0.20	AA00
029	2kd8-m2_A_A3_U4	AAA	AA00	91	0.17	AA00
030	2kd8-m3_A_A3_U4	AAA	AA00	63	0.24	AA00
031	2kd8-m4_A_A3_U4	AAA	AA00	75	0.26	AA00
032	2kd8-m5_A_A3_U4	AAA	AA00	91	0.18	AA00
033	2kd8-m6_A_A3_U4	AAA	AA00	79	0.22	AA00
034	2kd8-m7_A_A3_U4	AAA	AA00	82	0.20	AA00
035	2kd8-m8_A_A3_U4	AAA	AA00	73	0.22	AA00
036	2kd8-m9_A_A3_U4	AAA	AA00	81	0.24	AA00
037	2kd8-m10_A_U4_G5	AAA	AA00	95	0.18	AA00
038	2kd8-m11_A_U4_G5	AAA	AA00	81	0.16	AA00
039	2kd8-m12_A_U4_G5	AAA	AA00	88	0.16	AA00
040	2kd8-m1_A_U4_G5	AAA	AA00	92	0.16	AA00
041	2kd8-m2_A_U4_G5	AAA	AA00	84	0.21	AA00
042	2kd8-m3_A_U4_G5	AAA	AA00	72	0.13	AA00
043	2kd8-m4_A_U4_G5	AAA	AA00	89	0.15	AA00
044	2kd8-m5_A_U4_G5	AAA	AA00	95	0.17	AA00
045	2kd8-m6_A_U4_G5	AAA	AA00	84	0.17	AA00
046	2kd8-m7_A_U4_G5	AAA	AA00	85	0.22	AA00
047	2kd8-m8_A_U4_G5	AAA	AA00	89	0.12	AA00
048	2kd8-m9_A_U4_G5	AAA	AA00	90	0.18	AA00
049	2kd8-m10_A_G5_G6	AAA	AA00	85	0.18	AA00
050	2kd8-m11_A_G5_G6	AAA	AA00	80	0.26	AA00
051	2kd8-m12_A_G5_G6	AAA	AA00	80	0.25	AA00
052	2kd8-m1_A_G5_G6	AAA	AA00	92	0.15	AA00
053	2kd8-m2_A_G5_G6	AAA	AA00	84	0.20	AA00
054	2kd8-m3_A_G5_G6	AAA	AA00	85	0.23	AA00
055	2kd8-m4_A_G5_G6	AAA	AA00	84	0.22	AA00
056	2kd8-m5_A_G5_G6	AAA	AA00	79	0.26	AA00
057	2kd8-m6_A_G5_G6	AAA	AA00	83	0.27	AA00
058	2kd8-m7_A_G5_G6	AAA	AA00	90	0.15	AA00
059	2kd8-m8_A_G5_G6	AAA	AA00	83	0.25	AA00
060	2kd8-m9_A_G5_G6	AAA	AA00	84	0.20	AA00
061	2kd8-m10_A_G6_U7	AAw	AA01	82	0.23	AA01
062	2kd8-m11_A_G6_U7	AAw	AA01	80	0.27	AA01
063	2kd8-m12_A_G6_U7	AAw	AA01	78	0.26	AA01
064	2kd8-m1_A_G6_U7	AAw	AA01	84	0.24	AA01
065	2kd8-m2_A_G6_U7	AAw	AA01	91	0.15	AA01
066	2kd8-m3_A_G6_U7	NAN	NANT	0	0.64	AA05
067	2kd8-m4_A_G6_U7	AAw	AA01	17	0.33	AA01
068	2kd8-m5_A_G6_U7	AAw	AA01	75	0.23	AA01
069	2kd8-m6_A_G6_U7	AAw	AA01	66	0.31	AA01
070	2kd8-m7_A_G6_U7	AAw	AA01	69	0.22	AA01
071	2kd8-m8_A_G6_U7	NAN	NANT	0	0.68	AA05
072	2kd8-m9_A_G6_U7	AAw	AA01	40	0.42	AA01
073	2kd8-m10_A_U7_U8	AAA	AA00	74	0.22	AA00
074	2kd8-m11_A_U7_U8	AAA	AA00	65	0.25	AA00
075	2kd8-m12_A_U7_U8	AAA	AA00	62	0.27	AA00
076	2kd8-m1_A_U7_U8	AAA	AA00	81	0.20	AA00
077	2kd8-m2_A_U7_U8	AAA	AA00	86	0.17	AA00
078	2kd8-m3_A_U7_U8	AAA	AA00	82	0.21	AA00
079	2kd8-m4_A_U7_U8	AAA	AA00	80	0.21	AA00
080	2kd8-m5_A_U7_U8	AAA	AA00	77	0.22	AA00
081	2kd8-m6_A_U7_U8	AAA	AA00	87	0.19	AA00
082	2kd8-m7_A_U7_U8	AAA	AA00	63	0.29	AA00
083	2kd8-m8_A_U7_U8	AAA	AA00	79	0.20	AA00
084	2kd8-m9_A_U7_U8	AAA	AA00	84	0.16	AA00
085	2kd8-m10_A_U8_G9	AAA	AA00	87	0.18	AA00
086	2kd8-m11_A_U8_G9	AAA	AA00	56	0.27	AA00
087	2kd8-m12_A_U8_G9	AAA	AA00	44	0.26	AA00
088	2kd8-m1_A_U8_G9	AAA	AA00	48	0.26	AA00
089	2kd8-m2_A_U8_G9	AAA	AA00	54	0.26	AA00
090	2kd8-m3_A_U8_G9	AAA	AA00	24	0.29	AA00
091	2kd8-m4_A_U8_G9	AAA	AA00	63	0.24	AA00
092	2kd8-m5_A_U8_G9	AAA	AA00	74	0.22	AA00
093	2kd8-m6_A_U8_G9	AAA	AA00	75	0.23	AA00
094	2kd8-m7_A_U8_G9	AAA	AA00	32	0.34	AA00
095	2kd8-m8_A_U8_G9	AAA	AA00	57	0.25	AA00
096	2kd8-m9_A_U8_G9	AAA	AA00	43	0.31	AA00
097	2kd8-m10_A_G9_G10	NAN	NANT	0	0.54	AA05
098	2kd8-m11_A_G9_G10	NAN	NANT	0	0.59	AA05
099	2kd8-m12_A_G9_G10	NAN	NANT	0	0.54	AA05
100	2kd8-m1_A_G9_G10	NAN	NANT	0	0.57	AA05
101	2kd8-m2_A_G9_G10	NAN	NANT	0	0.48	AA05
102	2kd8-m3_A_G9_G10	NAN	NANT	0	0.53	AA05
103	2kd8-m4_A_G9_G10	NAN	NANT	0	0.58	AA05
104	2kd8-m5_A_G9_G10	NAN	NANT	0	0.48	AA05
105	2kd8-m6_A_G9_G10	NAN	NANT	0	0.57	AA05
106	2kd8-m7_A_G9_G10	NAN	NANT	0	0.56	AA05
107	2kd8-m8_A_G9_G10	NAN	NANT	0	0.55	AA05
108	2kd8-m9_A_G9_G10	NAN	NANT	0	0.67	AA05
109	2kd8-m10_A_G10_G11	NAN	NANT	0	0.84	OP03
110	2kd8-m11_A_G10_G11	NAN	NANT	0	0.85	OP03
111	2kd8-m12_A_G10_G11	NAN	NANT	0	0.74	OP09
112	2kd8-m1_A_G10_G11	NAN	NANT	0	0.75	OP09
113	2kd8-m2_A_G10_G11	NAN	NANT	0	0.81	OP03
114	2kd8-m3_A_G10_G11	NAN	NANT	0	0.85	OP03
115	2kd8-m4_A_G10_G11	NAN	NANT	0	0.79	OP03
116	2kd8-m5_A_G10_G11	NAN	NANT	0	0.76	OP09
117	2kd8-m6_A_G10_G11	NAN	NANT	0	0.80	OP03
118	2kd8-m7_A_G10_G11	NAN	NANT	0	0.70	OP09
119	2kd8-m8_A_G10_G11	NAN	NANT	0	0.81	OP03
120	2kd8-m9_A_G10_G11	NAN	NANT	0	0.82	OP03
121	2kd8-m10_A_G11_G12	NAN	NANT	0	0.82	IC07
122	2kd8-m11_A_G11_G12	NAN	NANT	0	1.53	AA11
123	2kd8-m12_A_G11_G12	NAN	NANT	0	1.58	AA11
124	2kd8-m1_A_G11_G12	NAN	NANT	0	1.52	AA11
125	2kd8-m2_A_G11_G12	NAN	NANT	0	0.74	IC07
126	2kd8-m3_A_G11_G12	NAN	NANT	0	1.05	IC07
127	2kd8-m4_A_G11_G12	NAN	NANT	0	1.63	AA01
128	2kd8-m5_A_G11_G12	NAN	NANT	0	1.24	IC07
129	2kd8-m6_A_G11_G12	NAN	NANT	0	1.38	AA01
130	2kd8-m7_A_G11_G12	NAN	NANT	0	1.56	AA11
131	2kd8-m8_A_G11_G12	NAN	NANT	0	1.51	AA11
132	2kd8-m9_A_G11_G12	NAN	NANT	0	0.88	IC07
133	2kd8-m10_A_G12_U13	NAN	NANT	0	1.20	AA04
134	2kd8-m11_A_G12_U13	NAN	NANT	0	1.83	OP01
135	2kd8-m12_A_G12_U13	NAN	NANT	0	2.01	OP01
136	2kd8-m1_A_G12_U13	NAN	NANT	0	0.89	AA08
137	2kd8-m2_A_G12_U13	NAN	NANT	0	1.47	AA04
138	2kd8-m3_A_G12_U13	NAN	NANT	0	1.23	AA04
139	2kd8-m4_A_G12_U13	NAN	NANT	0	2.13	ZZ02
140	2kd8-m5_A_G12_U13	NAN	NANT	0	1.33	AA04
141	2kd8-m6_A_G12_U13	NAN	NANT	0	1.10	AA04
142	2kd8-m7_A_G12_U13	NAN	NANT	0	1.21	AA04
143	2kd8-m8_A_G12_U13	NAN	NANT	0	1.84	OP01
144	2kd8-m9_A_G12_U13	NAN	NANT	0	1.47	AA04
145	2kd8-m10_A_U13_U14	NAN	NANT	0	0.91	AA08
146	2kd8-m11_A_U13_U14	AAA	AA00	37	0.36	AA00
147	2kd8-m12_A_U13_U14	AAA	AA00	14	0.44	AA00
148	2kd8-m1_A_U13_U14	NAN	NANT	0	0.92	AA00
149	2kd8-m2_A_U13_U14	AAA	AA08	24	0.51	AA08
150	2kd8-m3_A_U13_U14	NAN	NANT	0	0.79	AA00
151	2kd8-m4_A_U13_U14	AAA	AA09	30	0.49	AA09
152	2kd8-m5_A_U13_U14	NAN	NANT	0	0.85	AA00
153	2kd8-m6_A_U13_U14	NAN	NANT	0	0.96	AA00
154	2kd8-m7_A_U13_U14	NAN	NANT	0	0.77	AA00
155	2kd8-m8_A_U13_U14	AAA	AA09	15	0.53	AA09
156	2kd8-m9_A_U13_U14	AAA	AA08	12	0.52	AA08
157	2kd8-m10_A_U14_A15	AAA	AA00	78	0.17	AA00
158	2kd8-m11_A_U14_A15	AAA	AA00	47	0.29	AA00
159	2kd8-m12_A_U14_A15	AAA	AA00	62	0.26	AA00
160	2kd8-m1_A_U14_A15	AAA	AA00	67	0.20	AA00
161	2kd8-m2_A_U14_A15	AAA	AA00	70	0.22	AA00
162	2kd8-m3_A_U14_A15	AAA	AA00	67	0.21	AA00
163	2kd8-m4_A_U14_A15	AAA	AA00	65	0.27	AA00
164	2kd8-m5_A_U14_A15	AAA	AA00	49	0.30	AA00
165	2kd8-m6_A_U14_A15	AAA	AA00	73	0.20	AA00
166	2kd8-m7_A_U14_A15	AAA	AA00	64	0.29	AA00
167	2kd8-m8_A_U14_A15	AAA	AA00	63	0.28	AA00
168	2kd8-m9_A_U14_A15	AAA	AA00	69	0.21	AA00
169	2kd8-m10_A_A15_G16	AAA	AA00	79	0.17	AA00
170	2kd8-m11_A_A15_G16	AAA	AA00	76	0.20	AA00
171	2kd8-m12_A_A15_G16	AAA	AA00	77	0.24	AA00
172	2kd8-m1_A_A15_G16	AAA	AA00	74	0.23	AA00
173	2kd8-m2_A_A15_G16	AAA	AA00	71	0.28	AA00
174	2kd8-m3_A_A15_G16	AAA	AA00	73	0.30	AA00
175	2kd8-m4_A_A15_G16	AAA	AA00	68	0.29	AA00
176	2kd8-m5_A_A15_G16	AAA	AA00	64	0.26	AA00
177	2kd8-m6_A_A15_G16	AAA	AA00	83	0.21	AA00
178	2kd8-m7_A_A15_G16	AAA	AA00	72	0.26	AA00
179	2kd8-m8_A_A15_G16	AAA	AA00	77	0.24	AA00
180	2kd8-m9_A_A15_G16	AAA	AA00	68	0.21	AA00
181	2kd8-m10_A_G16_C17	AAA	AA00	74	0.28	AA00
182	2kd8-m11_A_G16_C17	AAA	AA00	73	0.29	AA00
183	2kd8-m12_A_G16_C17	AAA	AA00	86	0.24	AA00
184	2kd8-m1_A_G16_C17	AAA	AA00	87	0.20	AA00
185	2kd8-m2_A_G16_C17	AAA	AA00	85	0.25	AA00
186	2kd8-m3_A_G16_C17	AAA	AA00	88	0.23	AA00
187	2kd8-m4_A_G16_C17	AAA	AA00	68	0.28	AA00
188	2kd8-m5_A_G16_C17	AAA	AA00	79	0.27	AA00
189	2kd8-m6_A_G16_C17	AAA	AA00	87	0.22	AA00
190	2kd8-m7_A_G16_C17	AAA	AA00	78	0.26	AA00
191	2kd8-m8_A_G16_C17	AAA	AA00	83	0.27	AA00
192	2kd8-m9_A_G16_C17	AAA	AA00	81	0.21	AA00
193	2kd8-m10_A_C17_C18	AAA	AA00	83	0.28	AA00
194	2kd8-m11_A_C17_C18	AAA	AA00	66	0.28	AA00
195	2kd8-m12_A_C17_C18	AAA	AA00	62	0.30	AA00
196	2kd8-m1_A_C17_C18	AAA	AA00	93	0.16	AA00
197	2kd8-m2_A_C17_C18	AAA	AA00	75	0.24	AA00
198	2kd8-m3_A_C17_C18	AAA	AA00	85	0.21	AA00
199	2kd8-m4_A_C17_C18	AAA	AA00	84	0.22	AA00
200	2kd8-m5_A_C17_C18	AAA	AA00	83	0.20	AA00
201	2kd8-m6_A_C17_C18	AAA	AA00	64	0.30	AA00
202	2kd8-m7_A_C17_C18	AAA	AA00	79	0.25	AA00
203	2kd8-m8_A_C17_C18	AAA	AA00	61	0.32	AA00
204	2kd8-m9_A_C17_C18	AAA	AA00	86	0.23	AA00
205	2kd8-m10_A_C18_A19	AAA	AA00	77	0.23	AA00
206	2kd8-m11_A_C18_A19	AAA	AA00	83	0.20	AA00
207	2kd8-m12_A_C18_A19	AAA	AA00	73	0.19	AA00
208	2kd8-m1_A_C18_A19	AAA	AA00	94	0.12	AA00
209	2kd8-m2_A_C18_A19	AAA	AA00	82	0.18	AA00
210	2kd8-m3_A_C18_A19	AAA	AA00	83	0.17	AA00
211	2kd8-m4_A_C18_A19	AAA	AA00	83	0.17	AA00
212	2kd8-m5_A_C18_A19	AAA	AA00	82	0.19	AA00
213	2kd8-m6_A_C18_A19	AAA	AA00	77	0.21	AA00
214	2kd8-m7_A_C18_A19	AAA	AA00	72	0.24	AA00
215	2kd8-m8_A_C18_A19	AAA	AA00	83	0.20	AA00
216	2kd8-m9_A_C18_A19	AAA	AA00	91	0.14	AA00
217	2kd8-m10_A_A19_U20	AAA	AA00	76	0.21	AA00
218	2kd8-m11_A_A19_U20	AAA	AA00	79	0.18	AA00
219	2kd8-m12_A_A19_U20	AAA	AA00	80	0.19	AA00
220	2kd8-m1_A_A19_U20	AAA	AA00	85	0.21	AA00
221	2kd8-m2_A_A19_U20	AAA	AA00	81	0.22	AA00
222	2kd8-m3_A_A19_U20	AAA	AA00	77	0.20	AA00
223	2kd8-m4_A_A19_U20	AAA	AA00	79	0.23	AA00
224	2kd8-m5_A_A19_U20	AAA	AA00	81	0.23	AA00
225	2kd8-m6_A_A19_U20	AAA	AA00	81	0.16	AA00
226	2kd8-m7_A_A19_U20	AAA	AA00	64	0.23	AA00
227	2kd8-m8_A_A19_U20	AAA	AA00	86	0.18	AA00
228	2kd8-m9_A_A19_U20	AAA	AA00	76	0.27	AA00
229	2kd8-m10_A_U20_C21	AAA	AA00	73	0.19	AA00
230	2kd8-m11_A_U20_C21	AAA	AA00	85	0.18	AA00
231	2kd8-m12_A_U20_C21	AAA	AA00	83	0.18	AA00
232	2kd8-m1_A_U20_C21	AAA	AA00	91	0.15	AA00
233	2kd8-m2_A_U20_C21	AAA	AA00	90	0.17	AA00
234	2kd8-m3_A_U20_C21	AAA	AA00	78	0.24	AA00
235	2kd8-m4_A_U20_C21	AAA	AA00	76	0.19	AA00
236	2kd8-m5_A_U20_C21	AAA	AA00	89	0.15	AA00
237	2kd8-m6_A_U20_C21	AAA	AA00	86	0.14	AA00
238	2kd8-m7_A_U20_C21	AAA	AA09	52	0.23	AA09
239	2kd8-m8_A_U20_C21	AAA	AA00	88	0.18	AA00
240	2kd8-m9_A_U20_C21	AAA	AA00	61	0.20	AA00
241	2kd8-m10_A_C21_C22	AAA	AA00	68	0.25	AA00
242	2kd8-m11_A_C21_C22	A-B	AB01	14	0.42	AB01
243	2kd8-m12_A_C21_C22	A-B	AB05	78	0.21	AB05
244	2kd8-m1_A_C21_C22	A-B	AB01	24	0.42	AB01
245	2kd8-m2_A_C21_C22	AAA	AA00	76	0.24	AA00
246	2kd8-m3_A_C21_C22	AAA	AA00	68	0.26	AA00
247	2kd8-m4_A_C21_C22	AAA	AA00	84	0.22	AA00
248	2kd8-m5_A_C21_C22	A-B	AB05	80	0.16	AB05
249	2kd8-m6_A_C21_C22	AAA	AA00	80	0.24	AA00
250	2kd8-m7_A_C21_C22	AAA	AA00	39	0.28	AA00
251	2kd8-m8_A_C21_C22	AAA	AA00	84	0.20	AA00
252	2kd8-m9_A_C21_C22	AAA	AA00	53	0.23	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

Results of the assignment of 252 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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