Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 88 detected steps in 4 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2k7f-m1_B_DC1_DG2 | B12 | BB04 | 44 | 0.40 |
| 02 | 2k7f-m2_B_DC1_DG2 | B12 | BB04 | 88 | 0.20 |
| 03 | 2k7f-m3_B_DC1_DG2 | B12 | BB04 | 19 | 0.35 |
| 04 | 2k7f-m4_B_DC1_DG2 | B12 | BB04 | 63 | 0.27 |
| 05 | 2k7f-m1_B_DG2_DA3 | B12 | BB04 | 72 | 0.25 |
| 06 | 2k7f-m2_B_DG2_DA3 | B12 | BB04 | 40 | 0.23 |
| 07 | 2k7f-m3_B_DG2_DA3 | miB | BB10 | 55 | 0.27 |
| 08 | 2k7f-m4_B_DG2_DA3 | B12 | BB04 | 33 | 0.27 |
| 09 | 2k7f-m1_B_DA3_DC4 | BBB | BB00 | 78 | 0.24 |
| 10 | 2k7f-m2_B_DA3_DC4 | B12 | BB04 | 46 | 0.20 |
| 11 | 2k7f-m3_B_DA3_DC4 | miB | BB10 | 84 | 0.22 |
| 12 | 2k7f-m4_B_DA3_DC4 | B12 | BB04 | 34 | 0.26 |
| 13 | 2k7f-m1_B_DC4_DC5 | B12 | BB04 | 37 | 0.26 |
| 14 | 2k7f-m2_B_DC4_DC5 | B12 | BB04 | 45 | 0.20 |
| 15 | 2k7f-m3_B_DC4_DC5 | B12 | BB04 | 43 | 0.25 |
| 16 | 2k7f-m4_B_DC4_DC5 | B12 | BB04 | 34 | 0.23 |
| 17 | 2k7f-m1_B_DC5_DT6 | BBB | BB00 | 10 | 0.55 |
| 18 | 2k7f-m2_B_DC5_DT6 | BBB | BB00 | 27 | 0.36 |
| 19 | 2k7f-m3_B_DC5_DT6 | BBB | BB00 | 62 | 0.43 |
| 20 | 2k7f-m4_B_DC5_DT6 | BBB | BB00 | 19 | 0.46 |
| 21 | 2k7f-m1_B_DT6_DC7 | B12 | BB04 | 60 | 0.25 |
| 22 | 2k7f-m2_B_DT6_DC7 | miB | BB10 | 70 | 0.30 |
| 23 | 2k7f-m3_B_DT6_DC7 | miB | BB10 | 86 | 0.26 |
| 24 | 2k7f-m4_B_DT6_DC7 | B12 | BB04 | 73 | 0.33 |
| 25 | 2k7f-m1_B_DC7_DG8 | NAN | NANT | 0 | 0.76 |
| 26 | 2k7f-m2_B_DC7_DG8 | BBB | BB00 | 58 | 0.37 |
| 27 | 2k7f-m3_B_DC7_DG8 | miB | BB10 | 85 | 0.17 |
| 28 | 2k7f-m4_B_DC7_DG8 | BB2 | BB07 | 25 | 0.34 |
| 29 | 2k7f-m1_B_DG8_DA9 | B12 | BB04 | 83 | 0.18 |
| 30 | 2k7f-m2_B_DG8_DA9 | BB2 | BB07 | 18 | 0.18 |
| 31 | 2k7f-m3_B_DG8_DA9 | B12 | BB04 | 10 | 0.43 |
| 32 | 2k7f-m4_B_DG8_DA9 | BBB | BB00 | 26 | 0.50 |
| 33 | 2k7f-m1_B_DA9_DG10 | B12 | BB04 | 84 | 0.26 |
| 34 | 2k7f-m2_B_DA9_DG10 | B12 | BB04 | 30 | 0.40 |
| 35 | 2k7f-m3_B_DA9_DG10 | B12 | BB04 | 59 | 0.33 |
| 36 | 2k7f-m4_B_DA9_DG10 | B12 | BB04 | 54 | 0.30 |
| 37 | 2k7f-m1_B_DG10_DA11 | NAN | NANT | 0 | 0.43 |
| 38 | 2k7f-m2_B_DG10_DA11 | NAN | NANT | 0 | 0.56 |
| 39 | 2k7f-m3_B_DG10_DA11 | BBB | BB00 | 51 | 0.47 |
| 40 | 2k7f-m4_B_DG10_DA11 | B12 | BB04 | 41 | 0.36 |
| 41 | 2k7f-m1_B_DA11_DT12 | NAN | NANT | 0 | 0.60 |
| 42 | 2k7f-m2_B_DA11_DT12 | A-B | AB01 | 9 | 0.55 |
| 43 | 2k7f-m3_B_DA11_DT12 | BBw | BB02 | 12 | 0.47 |
| 44 | 2k7f-m4_B_DA11_DT12 | B-A | BA01 | 47 | 0.27 |
| 45 | 2k7f-m1_B_DT12_DC13 | BBB | BB00 | 43 | 0.35 |
| 46 | 2k7f-m2_B_DT12_DC13 | NAN | NANT | 0 | 0.58 |
| 47 | 2k7f-m3_B_DT12_DC13 | NAN | NANT | 0 | 0.78 |
| 48 | 2k7f-m4_B_DT12_DC13 | A-B | AB03 | 41 | 0.20 |
| 49 | 2k7f-m1_B_DC13_DA14 | NAN | NANT | 0 | 0.72 |
| 50 | 2k7f-m2_B_DC13_DA14 | BBB | BB00 | 59 | 0.43 |
| 51 | 2k7f-m3_B_DC13_DA14 | B-A | BA08 | 60 | 0.37 |
| 52 | 2k7f-m4_B_DC13_DA14 | BBw | BB02 | 66 | 0.22 |
| 53 | 2k7f-m1_C_DC19_DT20 | NAN | NANT | 0 | 0.54 |
| 54 | 2k7f-m2_C_DC19_DT20 | NAN | NANT | 0 | 0.72 |
| 55 | 2k7f-m3_C_DC19_DT20 | NAN | NANT | 0 | 0.47 |
| 56 | 2k7f-m4_C_DC19_DT20 | NAN | NANT | 0 | 0.55 |
| 57 | 2k7f-m1_C_DT20_DC21 | NAN | NANT | 0 | 0.70 |
| 58 | 2k7f-m2_C_DT20_DC21 | NAN | NANT | 0 | 0.58 |
| 59 | 2k7f-m3_C_DT20_DC21 | B-A | BA08 | 56 | 0.27 |
| 60 | 2k7f-m4_C_DT20_DC21 | NAN | NANT | 0 | 0.59 |
| 61 | 2k7f-m1_C_DC21_DG22 | NAN | NANT | 0 | 0.72 |
| 62 | 2k7f-m2_C_DC21_DG22 | B-A | BA05 | 42 | 0.33 |
| 63 | 2k7f-m3_C_DC21_DG22 | NAN | NANT | 0 | 0.42 |
| 64 | 2k7f-m4_C_DC21_DG22 | NAN | NANT | 0 | 0.53 |
| 65 | 2k7f-m1_C_DG22_DA23 | BBB | BB00 | 66 | 0.25 |
| 66 | 2k7f-m2_C_DG22_DA23 | A-B | AB01 | 65 | 0.23 |
| 67 | 2k7f-m3_C_DG22_DA23 | NAN | NANT | 0 | 0.63 |
| 68 | 2k7f-m4_C_DG22_DA23 | B-A | BA08 | 53 | 0.37 |
| 69 | 2k7f-m1_C_DA23_DG24 | B-A | BA05 | 12 | 0.39 |
| 70 | 2k7f-m2_C_DA23_DG24 | B-A | BA05 | 84 | 0.26 |
| 71 | 2k7f-m3_C_DA23_DG24 | B-A | BA08 | 59 | 0.39 |
| 72 | 2k7f-m4_C_DA23_DG24 | A-B | AB01 | 9 | 0.47 |
| 73 | 2k7f-m1_C_DG24_DG25 | A-B | AB03 | 61 | 0.34 |
| 74 | 2k7f-m2_C_DG24_DG25 | B-A | BA05 | 19 | 0.34 |
| 75 | 2k7f-m3_C_DG24_DG25 | BBB | BB00 | 9 | 0.30 |
| 76 | 2k7f-m4_C_DG24_DG25 | BBB | BB01 | 30 | 0.27 |
| 77 | 2k7f-m1_C_DG25_DT26 | BBB | BB00 | 62 | 0.28 |
| 78 | 2k7f-m2_C_DG25_DT26 | NAN | NANT | 0 | 0.58 |
| 79 | 2k7f-m3_C_DG25_DT26 | B-A | BA08 | 53 | 0.35 |
| 80 | 2k7f-m4_C_DG25_DT26 | BBB | BB00 | 43 | 0.26 |
| 81 | 2k7f-m1_C_DT26_DC27 | B12 | BB04 | 43 | 0.32 |
| 82 | 2k7f-m2_C_DT26_DC27 | A-B | AB05 | 21 | 0.54 |
| 83 | 2k7f-m3_C_DT26_DC27 | NAN | NANT | 0 | 0.31 |
| 84 | 2k7f-m4_C_DT26_DC27 | B12 | BB04 | 35 | 0.40 |
| 85 | 2k7f-m1_C_DC27_DG28 | NAN | NANT | 0 | 0.64 |
| 86 | 2k7f-m2_C_DC27_DG28 | BBB | BB00 | 38 | 0.56 |
| 87 | 2k7f-m3_C_DC27_DG28 | NAN | NANT | 0 | 0.66 |
| 88 | 2k7f-m4_C_DC27_DG28 | NAN | NANT | 0 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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