DNATCO v4.1: results

NMR structure of uridine bulged RNA duplex

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2k41-m10_A_G1_U2	AAA	AA00	59	0.18	AA00
002	2k41-m1_A_G1_U2	AAA	AA00	79	0.16	AA00
003	2k41-m2_A_G1_U2	AAA	AA00	61	0.19	AA00
004	2k41-m3_A_G1_U2	AAA	AA00	63	0.15	AA00
005	2k41-m4_A_G1_U2	AAA	AA00	89	0.15	AA00
006	2k41-m5_A_G1_U2	AAA	AA00	66	0.15	AA00
007	2k41-m6_A_G1_U2	AAA	AA00	92	0.14	AA00
008	2k41-m7_A_G1_U2	AAA	AA00	71	0.16	AA00
009	2k41-m8_A_G1_U2	AAA	AA00	82	0.16	AA00
010	2k41-m9_A_G1_U2	AAA	AA00	84	0.13	AA00
011	2k41-m10_A_U2_C3	AAA	AA00	19	0.39	AA00
012	2k41-m1_A_U2_C3	AAA	AA00	33	0.38	AA00
013	2k41-m2_A_U2_C3	AAA	AA00	39	0.34	AA00
014	2k41-m3_A_U2_C3	AAA	AA00	41	0.36	AA00
015	2k41-m4_A_U2_C3	AAA	AA00	40	0.37	AA00
016	2k41-m5_A_U2_C3	AAA	AA00	12	0.41	AA00
017	2k41-m6_A_U2_C3	AAA	AA00	43	0.37	AA00
018	2k41-m7_A_U2_C3	AAA	AA00	48	0.34	AA00
019	2k41-m8_A_U2_C3	AAA	AA00	55	0.31	AA00
020	2k41-m9_A_U2_C3	AAA	AA00	41	0.39	AA00
021	2k41-m10_A_C3_G4	A-B	AB05	47	0.32	AB05
022	2k41-m1_A_C3_G4	A-B	AB01	29	0.36	AB01
023	2k41-m2_A_C3_G4	A-B	AB01	20	0.39	AB01
024	2k41-m3_A_C3_G4	A-B	AB01	35	0.38	AB01
025	2k41-m4_A_C3_G4	A-B	AB01	18	0.37	AB01
026	2k41-m5_A_C3_G4	A-B	AB05	38	0.28	AB05
027	2k41-m6_A_C3_G4	A-B	AB05	47	0.27	AB05
028	2k41-m7_A_C3_G4	A-B	AB01	14	0.35	AB01
029	2k41-m8_A_C3_G4	A-B	AB01	32	0.34	AB01
030	2k41-m9_A_C3_G4	A-B	AB01	20	0.39	AB01
031	2k41-m10_A_G4_U5	NAN	NANT	0	1.40	OP09
032	2k41-m1_A_G4_U5	NAN	NANT	0	1.09	AA07
033	2k41-m2_A_G4_U5	NAN	NANT	0	1.29	AA07
034	2k41-m3_A_G4_U5	NAN	NANT	0	0.80	OP25
035	2k41-m4_A_G4_U5	NAN	NANT	0	1.06	AA07
036	2k41-m5_A_G4_U5	NAN	NANT	0	1.38	OP09
037	2k41-m6_A_G4_U5	NAN	NANT	0	1.42	OP09
038	2k41-m7_A_G4_U5	NAN	NANT	0	0.81	OP04
039	2k41-m8_A_G4_U5	NAN	NANT	0	0.78	OP25
040	2k41-m9_A_G4_U5	NAN	NANT	0	1.06	AA07
041	2k41-m10_A_U5_G6	NAN	NANT	0	1.02	BA10
042	2k41-m1_A_U5_G6	NAN	NANT	0	1.11	AA05
043	2k41-m2_A_U5_G6	NAN	NANT	0	1.31	AA13
044	2k41-m3_A_U5_G6	NAN	NANT	0	1.28	OP12
045	2k41-m4_A_U5_G6	NAN	NANT	0	1.62	OP31
046	2k41-m5_A_U5_G6	NAN	NANT	0	0.99	BA10
047	2k41-m6_A_U5_G6	NAN	NANT	0	0.92	BA10
048	2k41-m7_A_U5_G6	NAN	NANT	0	1.42	AA13
049	2k41-m8_A_U5_G6	NAN	NANT	0	1.30	OP12
050	2k41-m9_A_U5_G6	NAN	NANT	0	1.13	AA05
051	2k41-m10_A_G6_C7	AAA	AA08	71	0.31	AA08
052	2k41-m1_A_G6_C7	AAA	AA08	35	0.48	AA08
053	2k41-m2_A_G6_C7	AAA	AA04	71	0.34	AA04
054	2k41-m3_A_G6_C7	AAA	AA04	46	0.45	AA04
055	2k41-m4_A_G6_C7	AAA	AA00	10	0.38	AA00
056	2k41-m5_A_G6_C7	AAA	AA04	69	0.24	AA04
057	2k41-m6_A_G6_C7	AAA	AA08	68	0.30	AA08
058	2k41-m7_A_G6_C7	AAA	AA04	70	0.40	AA04
059	2k41-m8_A_G6_C7	AAA	AA08	63	0.47	AA08
060	2k41-m9_A_G6_C7	AAA	AA08	77	0.36	AA08
061	2k41-m10_A_C7_U8	NAN	NANT	0	0.51	AA00
062	2k41-m1_A_C7_U8	AAA	AA00	63	0.26	AA00
063	2k41-m2_A_C7_U8	AAA	AA04	76	0.23	AA04
064	2k41-m3_A_C7_U8	AAA	AA00	44	0.27	AA00
065	2k41-m4_A_C7_U8	AAA	AA00	37	0.29	AA00
066	2k41-m5_A_C7_U8	AAA	AA00	31	0.33	AA00
067	2k41-m6_A_C7_U8	NAN	NANT	0	0.44	AA00
068	2k41-m7_A_C7_U8	AAA	AA00	53	0.25	AA00
069	2k41-m8_A_C7_U8	AAA	AA00	79	0.24	AA00
070	2k41-m9_A_C7_U8	AAA	AA00	40	0.33	AA00
071	2k41-m10_A_U8_G9	AAA	AA00	67	0.18	AA00
072	2k41-m1_A_U8_G9	AAA	AA00	86	0.19	AA00
073	2k41-m2_A_U8_G9	AAA	AA00	83	0.21	AA00
074	2k41-m3_A_U8_G9	AAA	AA00	86	0.19	AA00
075	2k41-m4_A_U8_G9	AAA	AA00	87	0.19	AA00
076	2k41-m5_A_U8_G9	AAA	AA00	82	0.18	AA00
077	2k41-m6_A_U8_G9	AAA	AA00	72	0.19	AA00
078	2k41-m7_A_U8_G9	AAA	AA00	86	0.18	AA00
079	2k41-m8_A_U8_G9	AAA	AA00	88	0.18	AA00
080	2k41-m9_A_U8_G9	AAA	AA00	88	0.18	AA00
081	2k41-m10_B_C10_A11	AAA	AA08	72	0.29	AA08
082	2k41-m1_B_C10_A11	AAA	AA00	63	0.26	AA00
083	2k41-m2_B_C10_A11	AAA	AA00	56	0.32	AA00
084	2k41-m3_B_C10_A11	AAA	AA00	63	0.29	AA00
085	2k41-m4_B_C10_A11	AAA	AA00	60	0.29	AA00
086	2k41-m5_B_C10_A11	AAA	AA00	56	0.27	AA00
087	2k41-m6_B_C10_A11	AAA	AA08	78	0.26	AA08
088	2k41-m7_B_C10_A11	AAA	AA00	63	0.26	AA00
089	2k41-m8_B_C10_A11	AAA	AA00	61	0.28	AA00
090	2k41-m9_B_C10_A11	AAA	AA00	57	0.27	AA00
091	2k41-m10_B_A11_G12	NAN	NANT	0	0.60	AA12
092	2k41-m1_B_A11_G12	NAN	NANT	0	0.59	AA12
093	2k41-m2_B_A11_G12	AAu	AA12	13	0.55	AA12
094	2k41-m3_B_A11_G12	NAN	NANT	0	0.56	AA12
095	2k41-m4_B_A11_G12	NAN	NANT	0	0.59	AA12
096	2k41-m5_B_A11_G12	AAA	AA00	11	0.41	AA00
097	2k41-m6_B_A11_G12	NAN	NANT	0	0.58	AA12
098	2k41-m7_B_A11_G12	NAN	NANT	0	0.59	AA12
099	2k41-m8_B_A11_G12	NAN	NANT	0	0.56	AA12
100	2k41-m9_B_A11_G12	NAN	NANT	0	0.55	AA12
101	2k41-m10_B_G12_C13	AAA	AA00	57	0.23	AA00
102	2k41-m1_B_G12_C13	AAA	AA08	53	0.34	AA08
103	2k41-m2_B_G12_C13	AAA	AA08	41	0.39	AA08
104	2k41-m3_B_G12_C13	AAA	AA08	42	0.38	AA08
105	2k41-m4_B_G12_C13	AAA	AA08	46	0.37	AA08
106	2k41-m5_B_G12_C13	AAA	AA00	58	0.24	AA00
107	2k41-m6_B_G12_C13	AAA	AA00	57	0.24	AA00
108	2k41-m7_B_G12_C13	AAA	AA08	41	0.38	AA08
109	2k41-m8_B_G12_C13	AAA	AA08	44	0.39	AA08
110	2k41-m9_B_G12_C13	AAA	AA08	59	0.28	AA08
111	2k41-m10_B_C13_C14	AAA	AA00	46	0.19	AA00
112	2k41-m1_B_C13_C14	AAA	AA00	52	0.24	AA00
113	2k41-m2_B_C13_C14	AAA	AA00	25	0.27	AA00
114	2k41-m3_B_C13_C14	AAA	AA00	25	0.30	AA00
115	2k41-m4_B_C13_C14	AAA	AA00	60	0.17	AA00
116	2k41-m5_B_C13_C14	AAA	AA08	64	0.20	AA08
117	2k41-m6_B_C13_C14	AAA	AA08	59	0.25	AA08
118	2k41-m7_B_C13_C14	AAA	AA00	22	0.29	AA00
119	2k41-m8_B_C13_C14	AAA	AA00	14	0.33	AA00
120	2k41-m9_B_C13_C14	AAA	AA00	38	0.25	AA00
121	2k41-m10_B_C14_G15	AAA	AA00	70	0.23	AA00
122	2k41-m1_B_C14_G15	AAA	AA00	74	0.18	AA00
123	2k41-m2_B_C14_G15	AAA	AA00	46	0.25	AA00
124	2k41-m3_B_C14_G15	AAA	AA08	74	0.21	AA08
125	2k41-m4_B_C14_G15	AAA	AA08	76	0.16	AA08
126	2k41-m5_B_C14_G15	AAA	AA00	40	0.26	AA00
127	2k41-m6_B_C14_G15	AAA	AA08	87	0.14	AA08
128	2k41-m7_B_C14_G15	AAA	AA08	71	0.23	AA08
129	2k41-m8_B_C14_G15	AAA	AA08	78	0.21	AA08
130	2k41-m9_B_C14_G15	AAA	AA00	79	0.22	AA00
131	2k41-m10_B_G15_A16	AAA	AA00	81	0.17	AA00
132	2k41-m1_B_G15_A16	AAA	AA00	73	0.18	AA00
133	2k41-m2_B_G15_A16	AAA	AA00	45	0.29	AA00
134	2k41-m3_B_G15_A16	AAA	AA00	84	0.15	AA00
135	2k41-m4_B_G15_A16	AAA	AA00	31	0.32	AA00
136	2k41-m5_B_G15_A16	AAA	AA00	70	0.15	AA00
137	2k41-m6_B_G15_A16	AAA	AA00	40	0.29	AA00
138	2k41-m7_B_G15_A16	AAA	AA00	75	0.18	AA00
139	2k41-m8_B_G15_A16	AAA	AA00	28	0.31	AA00
140	2k41-m9_B_G15_A16	AAA	AA00	46	0.25	AA00
141	2k41-m10_B_A16_C17	AAA	AA00	78	0.16	AA00
142	2k41-m1_B_A16_C17	AAA	AA00	77	0.14	AA00
143	2k41-m2_B_A16_C17	AAA	AA00	78	0.13	AA00
144	2k41-m3_B_A16_C17	AAA	AA00	76	0.16	AA00
145	2k41-m4_B_A16_C17	AAA	AA00	84	0.13	AA00
146	2k41-m5_B_A16_C17	AAA	AA00	80	0.18	AA00
147	2k41-m6_B_A16_C17	AAA	AA00	80	0.15	AA00
148	2k41-m7_B_A16_C17	AAA	AA00	79	0.14	AA00
149	2k41-m8_B_A16_C17	AAA	AA00	76	0.14	AA00
150	2k41-m9_B_A16_C17	AAA	AA00	77	0.17	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Z

N

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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