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Conformers: ABBIImiBZICOPNSYNN
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Solution structure of stem-loop alpha of the hepatitis B virus post-transcriptional regulatory element

Results of the assignment of 315 detected steps in 15 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012jym-m10_A_G1_G2AAAAA00750.19 AA00
0022jym-m11_A_G1_G2AAAAA00710.21 AA00
0032jym-m12_A_G1_G2AAAAA00780.18 AA00
0042jym-m13_A_G1_G2NANNANT00.41 AA10
0052jym-m14_A_G1_G2AAAAA00740.19 AA00
0062jym-m15_A_G1_G2AAwAA01810.29 AA01
0072jym-m1_A_G1_G2AAAAA00740.20 AA00
0082jym-m2_A_G1_G2AAAAA00730.20 AA00
0092jym-m3_A_G1_G2AAAAA00740.21 AA00
0102jym-m4_A_G1_G2NANNANT00.60 BB13
0112jym-m5_A_G1_G2AAAAA00770.20 AA00
0122jym-m6_A_G1_G2AAAAA00780.19 AA00
0132jym-m7_A_G1_G2NANNANT00.60 BB13
0142jym-m8_A_G1_G2NANNANT00.60 BB13
0152jym-m9_A_G1_G2AAAAA00760.18 AA00
0162jym-m10_A_G2_C3AAAAA00760.23 AA00
0172jym-m11_A_G2_C3AAAAA00730.23 AA00
0182jym-m12_A_G2_C3AAAAA00780.23 AA00
0192jym-m13_A_G2_C3AAAAA00160.40 AA00
0202jym-m14_A_G2_C3AAAAA00790.22 AA00
0212jym-m15_A_G2_C3AAAAA00700.30 AA00
0222jym-m1_A_G2_C3AAAAA00750.21 AA00
0232jym-m2_A_G2_C3AAAAA00750.23 AA00
0242jym-m3_A_G2_C3AAAAA00700.31 AA00
0252jym-m4_A_G2_C3AAAAA04180.41 AA04
0262jym-m5_A_G2_C3AAAAA00780.22 AA00
0272jym-m6_A_G2_C3AAAAA00770.24 AA00
0282jym-m7_A_G2_C3AAAAA04240.41 AA04
0292jym-m8_A_G2_C3NANNANT00.46 AA04
0302jym-m9_A_G2_C3AAAAA00810.19 AA00
0312jym-m10_A_C3_U4AAAAA00620.28 AA00
0322jym-m11_A_C3_U4AAAAA00650.23 AA00
0332jym-m12_A_C3_U4AAAAA00730.21 AA00
0342jym-m13_A_C3_U4AAAAA00760.22 AA00
0352jym-m14_A_C3_U4AAAAA00730.23 AA00
0362jym-m15_A_C3_U4AAAAA00610.21 AA00
0372jym-m1_A_C3_U4AAAAA00620.24 AA00
0382jym-m2_A_C3_U4AAAAA00560.25 AA00
0392jym-m3_A_C3_U4AAAAA00620.22 AA00
0402jym-m4_A_C3_U4AAAAA00750.18 AA00
0412jym-m5_A_C3_U4AAAAA00650.24 AA00
0422jym-m6_A_C3_U4AAAAA00620.23 AA00
0432jym-m7_A_C3_U4AAAAA00690.20 AA00
0442jym-m8_A_C3_U4AAAAA00790.18 AA00
0452jym-m9_A_C3_U4AAAAA00620.29 AA00
0462jym-m10_A_U4_C5AAAAA00630.23 AA00
0472jym-m11_A_U4_C5AAAAA00650.21 AA00
0482jym-m12_A_U4_C5AAAAA00660.23 AA00
0492jym-m13_A_U4_C5AAAAA00700.21 AA00
0502jym-m14_A_U4_C5AAAAA00640.22 AA00
0512jym-m15_A_U4_C5AAAAA00460.25 AA00
0522jym-m1_A_U4_C5AAAAA00610.22 AA00
0532jym-m2_A_U4_C5AAAAA00660.21 AA00
0542jym-m3_A_U4_C5AAAAA00580.23 AA00
0552jym-m4_A_U4_C5AAAAA00610.24 AA00
0562jym-m5_A_U4_C5AAAAA00650.20 AA00
0572jym-m6_A_U4_C5AAAAA00590.23 AA00
0582jym-m7_A_U4_C5AAAAA00550.24 AA00
0592jym-m8_A_U4_C5AAAAA00560.22 AA00
0602jym-m9_A_U4_C5AAAAA00630.24 AA00
0612jym-m10_A_C5_G6OPNOP09350.57 OP09
0622jym-m11_A_C5_G6NANNANT00.62 OP09
0632jym-m12_A_C5_G6NANNANT00.60 OP09
0642jym-m13_A_C5_G6NANNANT00.68 OP09
0652jym-m14_A_C5_G6NANNANT00.63 OP09
0662jym-m15_A_C5_G6NANNANT00.61 OP09
0672jym-m1_A_C5_G6NANNANT00.59 OP09
0682jym-m2_A_C5_G6NANNANT00.66 OP09
0692jym-m3_A_C5_G6NANNANT00.62 OP09
0702jym-m4_A_C5_G6OPNOP09320.60 OP09
0712jym-m5_A_C5_G6NANNANT00.58 OP09
0722jym-m6_A_C5_G6NANNANT00.58 OP09
0732jym-m7_A_C5_G6NANNANT00.63 OP09
0742jym-m8_A_C5_G6NANNANT00.63 OP09
0752jym-m9_A_C5_G6NANNANT00.63 OP09
0762jym-m10_A_G6_C7OPNOP12380.60 OP12
0772jym-m11_A_G6_C7OPNOP12440.57 OP12
0782jym-m12_A_G6_C7NANNANT00.60 OP12
0792jym-m13_A_G6_C7NANNANT00.60 OP12
0802jym-m14_A_G6_C7NANNANT00.84 OP11
0812jym-m15_A_G6_C7NANNANT00.57 OP12
0822jym-m1_A_G6_C7OPNOP12330.58 OP12
0832jym-m2_A_G6_C7OPNOP12480.54 OP12
0842jym-m3_A_G6_C7NANNANT00.55 OP12
0852jym-m4_A_G6_C7OPNOP12330.61 OP12
0862jym-m5_A_G6_C7OPNOP12400.58 OP12
0872jym-m6_A_G6_C7OPNOP12410.56 OP12
0882jym-m7_A_G6_C7OPNOP12410.55 OP12
0892jym-m8_A_G6_C7OPNOP12410.56 OP12
0902jym-m9_A_G6_C7NANNANT00.55 OP12
0912jym-m10_A_C7_A8AAAAA08370.37 AA08
0922jym-m11_A_C7_A8AAAAA08640.28 AA08
0932jym-m12_A_C7_A8AAAAA08440.39 AA08
0942jym-m13_A_C7_A8AAAAA08380.40 AA08
0952jym-m14_A_C7_A8AAAAA08420.42 AA08
0962jym-m15_A_C7_A8AAAAA08150.49 AA08
0972jym-m1_A_C7_A8AAAAA08450.40 AA08
0982jym-m2_A_C7_A8AAAAA00560.31 AA00
0992jym-m3_A_C7_A8AAAAA08480.39 AA08
1002jym-m4_A_C7_A8AAAAA00360.40 AA00
1012jym-m5_A_C7_A8AAAAA08540.30 AA08
1022jym-m6_A_C7_A8AAAAA08310.39 AA08
1032jym-m7_A_C7_A8AAAAA08520.32 AA08
1042jym-m8_A_C7_A8AAAAA08550.31 AA08
1052jym-m9_A_C7_A8AAAAA08420.41 AA08
1062jym-m10_A_A8_G9AAAAA00740.15 AA00
1072jym-m11_A_A8_G9AAAAA00820.14 AA00
1082jym-m12_A_A8_G9AAAAA00750.17 AA00
1092jym-m13_A_A8_G9AAAAA00750.18 AA00
1102jym-m14_A_A8_G9AAAAA00810.12 AA00
1112jym-m15_A_A8_G9AAAAA00800.14 AA00
1122jym-m1_A_A8_G9AAAAA00750.18 AA00
1132jym-m2_A_A8_G9AAAAA00780.17 AA00
1142jym-m3_A_A8_G9AAAAA00770.15 AA00
1152jym-m4_A_A8_G9AAAAA00810.14 AA00
1162jym-m5_A_A8_G9AAAAA00710.20 AA00
1172jym-m6_A_A8_G9AAAAA00780.14 AA00
1182jym-m7_A_A8_G9AAAAA00710.21 AA00
1192jym-m8_A_A8_G9AAAAA00700.17 AA00
1202jym-m9_A_A8_G9AAAAA00750.17 AA00
1212jym-m10_A_G9_C10A-BAB05730.23 AB05
1222jym-m11_A_G9_C10NANNANT00.54 AA01
1232jym-m12_A_G9_C10A-BAB05730.34 AB05
1242jym-m13_A_G9_C10NANNANT00.45 AA01
1252jym-m14_A_G9_C10NANNANT00.48 AA01
1262jym-m15_A_G9_C10NANNANT00.46 AA01
1272jym-m1_A_G9_C10NANNANT00.41 AA01
1282jym-m2_A_G9_C10NANNANT00.50 AA01
1292jym-m3_A_G9_C10NANNANT00.39 AA01
1302jym-m4_A_G9_C10NANNANT00.43 AA01
1312jym-m5_A_G9_C10NANNANT00.54 AA01
1322jym-m6_A_G9_C10NANNANT00.43 AA01
1332jym-m7_A_G9_C10NANNANT00.52 AA01
1342jym-m8_A_G9_C10NANNANT00.40 AA01
1352jym-m9_A_G9_C10NANNANT00.40 AA01
1362jym-m10_A_C10_A11NANNANT00.58 BB20
1372jym-m11_A_C10_A11NANNANT00.75 BB20
1382jym-m12_A_C10_A11NANNANT00.57 BB20
1392jym-m13_A_C10_A11NANNANT01.57 BB04
1402jym-m14_A_C10_A11NANNANT01.55 OP18
1412jym-m15_A_C10_A11NANNANT01.55 AA07
1422jym-m1_A_C10_A11NANNANT00.67 BB20
1432jym-m2_A_C10_A11NANNANT01.51 OP18
1442jym-m3_A_C10_A11NANNANT00.58 BB20
1452jym-m4_A_C10_A11NANNANT01.66 BB00
1462jym-m5_A_C10_A11NANNANT01.55 OP18
1472jym-m6_A_C10_A11NANNANT01.56 AA07
1482jym-m7_A_C10_A11NANNANT01.52 OP18
1492jym-m8_A_C10_A11NANNANT01.66 BB00
1502jym-m9_A_C10_A11NANNANT01.49 OP18
1512jym-m10_A_A11_G12NANNANT01.29 BB08
1522jym-m11_A_A11_G12NANNANT00.91 BB08
1532jym-m12_A_A11_G12NANNANT01.14 BB08
1542jym-m13_A_A11_G12NANNANT01.33 BB08
1552jym-m14_A_A11_G12NANNANT01.07 BB08
1562jym-m15_A_A11_G12NANNANT00.94 BB08
1572jym-m1_A_A11_G12NANNANT00.96 BB08
1582jym-m2_A_A11_G12NANNANT00.98 BB08
1592jym-m3_A_A11_G12NANNANT01.13 BB08
1602jym-m4_A_A11_G12NANNANT00.91 BB08
1612jym-m5_A_A11_G12NANNANT01.05 BB08
1622jym-m6_A_A11_G12NANNANT00.96 BB08
1632jym-m7_A_A11_G12NANNANT01.02 BB08
1642jym-m8_A_A11_G12NANNANT01.26 BB08
1652jym-m9_A_A11_G12NANNANT01.09 BB08
1662jym-m10_A_G12_G13NANNANT02.18 OP19
1672jym-m11_A_G12_G13NANNANT01.35 IC03
1682jym-m12_A_G12_G13NANNANT01.76 OP23
1692jym-m13_A_G12_G13NANNANT02.09 OP19
1702jym-m14_A_G12_G13NANNANT01.34 IC03
1712jym-m15_A_G12_G13NANNANT01.35 IC03
1722jym-m1_A_G12_G13NANNANT01.34 IC03
1732jym-m2_A_G12_G13NANNANT01.37 IC03
1742jym-m3_A_G12_G13NANNANT02.08 OP19
1752jym-m4_A_G12_G13NANNANT01.35 IC03
1762jym-m5_A_G12_G13NANNANT01.78 OP23
1772jym-m6_A_G12_G13NANNANT01.39 IC03
1782jym-m7_A_G12_G13NANNANT01.82 OP23
1792jym-m8_A_G12_G13NANNANT02.13 OP19
1802jym-m9_A_G12_G13NANNANT01.37 IC03
1812jym-m10_A_G13_U14NANNANT02.00 OP20
1822jym-m11_A_G13_U14NANNANT00.88 OP14
1832jym-m12_A_G13_U14NANNANT01.03 OP14
1842jym-m13_A_G13_U14NANNANT02.07 OP20
1852jym-m14_A_G13_U14NANNANT00.83 OP14
1862jym-m15_A_G13_U14NANNANT00.92 OP14
1872jym-m1_A_G13_U14NANNANT00.86 OP14
1882jym-m2_A_G13_U14NANNANT00.87 OP14
1892jym-m3_A_G13_U14NANNANT00.94 OP14
1902jym-m4_A_G13_U14NANNANT00.92 OP14
1912jym-m5_A_G13_U14NANNANT01.06 OP14
1922jym-m6_A_G13_U14NANNANT01.01 OP14
1932jym-m7_A_G13_U14NANNANT00.97 OP14
1942jym-m8_A_G13_U14NANNANT00.95 OP14
1952jym-m9_A_G13_U14NANNANT00.91 OP14
1962jym-m10_A_U14_C15NANNANT01.08 OP17
1972jym-m11_A_U14_C15NANNANT00.93 OP17
1982jym-m12_A_U14_C15NANNANT01.14 OP17
1992jym-m13_A_U14_C15NANNANT01.09 OP17
2002jym-m14_A_U14_C15NANNANT00.95 OP17
2012jym-m15_A_U14_C15NANNANT01.04 OP17
2022jym-m1_A_U14_C15NANNANT00.99 OP17
2032jym-m2_A_U14_C15NANNANT00.94 OP17
2042jym-m3_A_U14_C15NANNANT00.98 OP17
2052jym-m4_A_U14_C15NANNANT01.00 OP17
2062jym-m5_A_U14_C15NANNANT01.20 OP17
2072jym-m6_A_U14_C15NANNANT01.17 OP17
2082jym-m7_A_U14_C15NANNANT01.14 OP17
2092jym-m8_A_U14_C15NANNANT01.00 OP17
2102jym-m9_A_U14_C15NANNANT01.05 OP17
2112jym-m10_A_C15_U16AAAAA00300.38 AA00
2122jym-m11_A_C15_U16NANNANT00.43 AA04
2132jym-m12_A_C15_U16AAAAA04260.35 AA04
2142jym-m13_A_C15_U16AAAAA00630.34 AA00
2152jym-m14_A_C15_U16AAAAA04270.38 AA04
2162jym-m15_A_C15_U16NANNANT00.46 AA08
2172jym-m1_A_C15_U16AAAAA00120.46 AA00
2182jym-m2_A_C15_U16AAAAA00150.39 AA00
2192jym-m3_A_C15_U16NANNANT00.44 AA04
2202jym-m4_A_C15_U16AAAAA08170.38 AA08
2212jym-m5_A_C15_U16AAAAA04290.40 AA04
2222jym-m6_A_C15_U16NANNANT00.42 AA08
2232jym-m7_A_C15_U16NANNANT00.42 AA00
2242jym-m8_A_C15_U16NANNANT00.45 AA04
2252jym-m9_A_C15_U16AAAAA04310.37 AA04
2262jym-m10_A_U16_G17AAAAA00290.37 AA00
2272jym-m11_A_U16_G17AAAAA00200.43 AA00
2282jym-m12_A_U16_G17AAAAA00690.27 AA00
2292jym-m13_A_U16_G17AAAAA00710.27 AA00
2302jym-m14_A_U16_G17AAAAA00740.25 AA00
2312jym-m15_A_U16_G17AAAAA00350.40 AA00
2322jym-m1_A_U16_G17AAAAA00680.25 AA00
2332jym-m2_A_U16_G17AAAAA00410.33 AA00
2342jym-m3_A_U16_G17AAAAA00510.35 AA00
2352jym-m4_A_U16_G17AAAAA00190.44 AA00
2362jym-m5_A_U16_G17AAAAA00500.30 AA00
2372jym-m6_A_U16_G17AAAAA00300.41 AA00
2382jym-m7_A_U16_G17AAAAA00520.29 AA00
2392jym-m8_A_U16_G17AAAAA00500.33 AA00
2402jym-m9_A_U16_G17AAAAA00730.24 AA00
2412jym-m10_A_G17_G18AAAAA00630.25 AA00
2422jym-m11_A_G17_G18AAAAA00550.29 AA00
2432jym-m12_A_G17_G18AAAAA00700.22 AA00
2442jym-m13_A_G17_G18AAAAA00650.24 AA00
2452jym-m14_A_G17_G18AAAAA00620.25 AA00
2462jym-m15_A_G17_G18AAAAA00520.34 AA00
2472jym-m1_A_G17_G18AAAAA00510.25 AA00
2482jym-m2_A_G17_G18AAAAA00590.25 AA00
2492jym-m3_A_G17_G18AAAAA00500.38 AA00
2502jym-m4_A_G17_G18AAAAA00420.33 AA00
2512jym-m5_A_G17_G18AAAAA00560.25 AA00
2522jym-m6_A_G17_G18AAAAA00550.33 AA00
2532jym-m7_A_G17_G18AAAAA00580.25 AA00
2542jym-m8_A_G17_G18AAAAA00660.25 AA00
2552jym-m9_A_G17_G18AAAAA00690.22 AA00
2562jym-m10_A_G18_A19AAAAA00800.13 AA00
2572jym-m11_A_G18_A19AAAAA00770.15 AA00
2582jym-m12_A_G18_A19AAAAA00790.13 AA00
2592jym-m13_A_G18_A19AAAAA00730.16 AA00
2602jym-m14_A_G18_A19AAAAA00740.15 AA00
2612jym-m15_A_G18_A19AAAAA00750.16 AA00
2622jym-m1_A_G18_A19AAAAA00730.17 AA00
2632jym-m2_A_G18_A19AAAAA00770.14 AA00
2642jym-m3_A_G18_A19AAAAA00730.15 AA00
2652jym-m4_A_G18_A19AAAAA00750.17 AA00
2662jym-m5_A_G18_A19AAAAA00780.13 AA00
2672jym-m6_A_G18_A19AAAAA00780.15 AA00
2682jym-m7_A_G18_A19AAAAA00820.13 AA00
2692jym-m8_A_G18_A19AAAAA00730.16 AA00
2702jym-m9_A_G18_A19AAAAA00770.14 AA00
2712jym-m10_A_A19_G20AAAAA00700.18 AA00
2722jym-m11_A_A19_G20AAAAA00660.18 AA00
2732jym-m12_A_A19_G20AAAAA00690.18 AA00
2742jym-m13_A_A19_G20AAAAA00700.17 AA00
2752jym-m14_A_A19_G20AAAAA00640.20 AA00
2762jym-m15_A_A19_G20AAAAA00640.23 AA00
2772jym-m1_A_A19_G20AAAAA00670.19 AA00
2782jym-m2_A_A19_G20AAAAA00700.17 AA00
2792jym-m3_A_A19_G20AAAAA00700.18 AA00
2802jym-m4_A_A19_G20AAAAA00800.16 AA00
2812jym-m5_A_A19_G20AAAAA00720.16 AA00
2822jym-m6_A_A19_G20AAAAA00720.17 AA00
2832jym-m7_A_A19_G20AAAAA00790.13 AA00
2842jym-m8_A_A19_G20AAAAA00690.20 AA00
2852jym-m9_A_A19_G20AAAAA00740.17 AA00
2862jym-m10_A_G20_U21AAAAA00730.32 AA00
2872jym-m11_A_G20_U21AAAAA00770.29 AA00
2882jym-m12_A_G20_U21AAAAA00750.29 AA00
2892jym-m13_A_G20_U21AAAAA00710.31 AA00
2902jym-m14_A_G20_U21AAAAA00760.30 AA00
2912jym-m15_A_G20_U21AAAAA00780.26 AA00
2922jym-m1_A_G20_U21AAAAA00660.33 AA00
2932jym-m2_A_G20_U21AAAAA00730.31 AA00
2942jym-m3_A_G20_U21AAAAA00730.29 AA00
2952jym-m4_A_G20_U21AAAAA00650.32 AA00
2962jym-m5_A_G20_U21AAAAA00690.33 AA00
2972jym-m6_A_G20_U21AAAAA00760.30 AA00
2982jym-m7_A_G20_U21AAAAA00770.27 AA00
2992jym-m8_A_G20_U21AAAAA00720.30 AA00
3002jym-m9_A_G20_U21AAAAA00730.32 AA00
3012jym-m10_A_U21_C22AAwAA01750.37 AA01
3022jym-m11_A_U21_C22AAwAA01780.36 AA01
3032jym-m12_A_U21_C22AAwAA01700.37 AA01
3042jym-m13_A_U21_C22NANNANT00.70 AA10
3052jym-m14_A_U21_C22AAwAA01760.37 AA01
3062jym-m15_A_U21_C22AAwAA01570.43 AA01
3072jym-m1_A_U21_C22AAwAA01740.37 AA01
3082jym-m2_A_U21_C22AAwAA01790.34 AA01
3092jym-m3_A_U21_C22AAwAA01740.32 AA01
3102jym-m4_A_U21_C22NANNANT00.87 BA09
3112jym-m5_A_U21_C22AAwAA01760.37 AA01
3122jym-m6_A_U21_C22AAwAA01780.35 AA01
3132jym-m7_A_U21_C22NANNANT00.88 BA09
3142jym-m8_A_U21_C22NANNANT00.81 BA09
3152jym-m9_A_U21_C22AAwAA01700.41 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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