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Conformers: ABBIImiBZICOPNSYNN
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NMR structure of RNA duplex

Results of the assignment of 180 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012jxq-m10_A_G1_C2AAAAA04930.18 AA04
0022jxq-m1_A_G1_C2AAAAA04850.19 AA04
0032jxq-m2_A_G1_C2AAAAA04840.24 AA04
0042jxq-m3_A_G1_C2AAAAA04830.24 AA04
0052jxq-m4_A_G1_C2AAAAA04830.25 AA04
0062jxq-m5_A_G1_C2AAAAA04910.19 AA04
0072jxq-m6_A_G1_C2AAAAA04850.22 AA04
0082jxq-m7_A_G1_C2AAAAA04820.25 AA04
0092jxq-m8_A_G1_C2AAAAA04890.20 AA04
0102jxq-m9_A_G1_C2AAAAA04830.24 AA04
0112jxq-m10_A_C2_A3AAAAA00670.19 AA00
0122jxq-m1_A_C2_A3AAAAA00670.23 AA00
0132jxq-m2_A_C2_A3AAAAA00890.15 AA00
0142jxq-m3_A_C2_A3AAAAA00920.17 AA00
0152jxq-m4_A_C2_A3AAAAA00790.15 AA00
0162jxq-m5_A_C2_A3AAAAA00740.19 AA00
0172jxq-m6_A_C2_A3AAAAA00860.17 AA00
0182jxq-m7_A_C2_A3AAAAA00900.16 AA00
0192jxq-m8_A_C2_A3AAAAA00350.22 AA00
0202jxq-m9_A_C2_A3AAAAA00930.14 AA00
0212jxq-m10_A_A3_G4AAAAA00830.17 AA00
0222jxq-m1_A_A3_G4AAAAA00730.18 AA00
0232jxq-m2_A_A3_G4AAAAA00880.15 AA00
0242jxq-m3_A_A3_G4AAAAA00850.16 AA00
0252jxq-m4_A_A3_G4AAAAA00560.22 AA00
0262jxq-m5_A_A3_G4AAAAA00850.17 AA00
0272jxq-m6_A_A3_G4AAAAA00720.16 AA00
0282jxq-m7_A_A3_G4AAAAA00860.15 AA00
0292jxq-m8_A_A3_G4AAAAA00840.17 AA00
0302jxq-m9_A_A3_G4AAAAA00860.15 AA00
0312jxq-m10_A_G4_A5AAAAA00770.20 AA00
0322jxq-m1_A_G4_A5AAAAA04920.11 AA04
0332jxq-m2_A_G4_A5AAAAA00860.15 AA00
0342jxq-m3_A_G4_A5AAAAA00810.16 AA00
0352jxq-m4_A_G4_A5AAAAA00720.24 AA00
0362jxq-m5_A_G4_A5AAAAA00770.19 AA00
0372jxq-m6_A_G4_A5AAAAA00850.16 AA00
0382jxq-m7_A_G4_A5AAAAA00800.17 AA00
0392jxq-m8_A_G4_A5AAAAA00790.19 AA00
0402jxq-m9_A_G4_A5AAAAA00830.17 AA00
0412jxq-m10_A_A5_G6AAAAA00770.19 AA00
0422jxq-m1_A_A5_G6AAAAA00600.24 AA00
0432jxq-m2_A_A5_G6AAAAA00830.18 AA00
0442jxq-m3_A_A5_G6AAAAA00850.17 AA00
0452jxq-m4_A_A5_G6AAAAA00830.20 AA00
0462jxq-m5_A_A5_G6AAAAA00820.18 AA00
0472jxq-m6_A_A5_G6AAAAA00830.18 AA00
0482jxq-m7_A_A5_G6AAAAA00840.18 AA00
0492jxq-m8_A_A5_G6AAAAA00820.19 AA00
0502jxq-m9_A_A5_G6AAAAA00870.16 AA00
0512jxq-m10_A_G6_A7AAAAA00720.16 AA00
0522jxq-m1_A_G6_A7AAAAA00430.26 AA00
0532jxq-m2_A_G6_A7AAAAA00510.19 AA00
0542jxq-m3_A_G6_A7AAAAA00490.18 AA00
0552jxq-m4_A_G6_A7AAAAA00430.19 AA00
0562jxq-m5_A_G6_A7AAAAA00800.17 AA00
0572jxq-m6_A_G6_A7AAAAA00820.15 AA00
0582jxq-m7_A_G6_A7AAAAA00700.15 AA00
0592jxq-m8_A_G6_A7AAAAA00530.23 AA00
0602jxq-m9_A_G6_A7AAAAA00830.17 AA00
0612jxq-m10_A_A7_G8AAAAA00760.21 AA00
0622jxq-m1_A_A7_G8AAAAA00530.26 AA00
0632jxq-m2_A_A7_G8AAAAA00710.22 AA00
0642jxq-m3_A_A7_G8AAAAA00690.20 AA00
0652jxq-m4_A_A7_G8AAAAA00740.21 AA00
0662jxq-m5_A_A7_G8AAAAA00730.19 AA00
0672jxq-m6_A_A7_G8AAAAA00790.20 AA00
0682jxq-m7_A_A7_G8AAAAA00700.16 AA00
0692jxq-m8_A_A7_G8AAAAA00780.23 AA00
0702jxq-m9_A_A7_G8AAAAA00750.17 AA00
0712jxq-m10_A_G8_C9AAAAA00530.22 AA00
0722jxq-m1_A_G8_C9AAAAA00650.23 AA00
0732jxq-m2_A_G8_C9AAAAA00700.21 AA00
0742jxq-m3_A_G8_C9AAAAA00760.25 AA00
0752jxq-m4_A_G8_C9AAAAA00760.24 AA00
0762jxq-m5_A_G8_C9AAAAA04710.24 AA04
0772jxq-m6_A_G8_C9AAAAA00670.22 AA00
0782jxq-m7_A_G8_C9AAAAA04720.25 AA04
0792jxq-m8_A_G8_C9AAAAA00690.20 AA00
0802jxq-m9_A_G8_C9AAAAA04740.22 AA04
0812jxq-m10_A_C9_G10AAAAA00100.32 AA00
0822jxq-m1_A_C9_G10AAuAA12190.51 AA12
0832jxq-m2_A_C9_G10AAuAA12170.51 AA12
0842jxq-m3_A_C9_G10AAuAA12180.49 AA12
0852jxq-m4_A_C9_G10AAAAA0390.33 AA03
0862jxq-m5_A_C9_G10AAuAA12190.48 AA12
0872jxq-m6_A_C9_G10AAAAA03210.29 AA03
0882jxq-m7_A_C9_G10AAAAA03100.33 AA03
0892jxq-m8_A_C9_G10NANNANT00.53 AA12
0902jxq-m9_A_C9_G10AAuAA12180.50 AA12
0912jxq-m10_B_C11_G12AAAAA00760.18 AA00
0922jxq-m1_B_C11_G12AAAAA00530.21 AA00
0932jxq-m2_B_C11_G12AAAAA00700.20 AA00
0942jxq-m3_B_C11_G12AAAAA00520.19 AA00
0952jxq-m4_B_C11_G12AAAAA00480.19 AA00
0962jxq-m5_B_C11_G12AAAAA00790.17 AA00
0972jxq-m6_B_C11_G12AAAAA04910.13 AA04
0982jxq-m7_B_C11_G12AAAAA00540.17 AA00
0992jxq-m8_B_C11_G12AAAAA00830.19 AA00
1002jxq-m9_B_C11_G12AAAAA00700.17 AA00
1012jxq-m10_B_G12_C13AAAAA00740.17 AA00
1022jxq-m1_B_G12_C13AAAAA00840.16 AA00
1032jxq-m2_B_G12_C13AAAAA00840.16 AA00
1042jxq-m3_B_G12_C13AAAAA00780.16 AA00
1052jxq-m4_B_G12_C13AAAAA00800.16 AA00
1062jxq-m5_B_G12_C13AAAAA00800.17 AA00
1072jxq-m6_B_G12_C13AAAAA04750.25 AA04
1082jxq-m7_B_G12_C13AAAAA00750.18 AA00
1092jxq-m8_B_G12_C13AAAAA00780.17 AA00
1102jxq-m9_B_G12_C13AAAAA00710.18 AA00
1112jxq-m10_B_C13_U14AAAAA00750.19 AA00
1122jxq-m1_B_C13_U14AAAAA00700.23 AA00
1132jxq-m2_B_C13_U14AAAAA00810.20 AA00
1142jxq-m3_B_C13_U14AAAAA00690.21 AA00
1152jxq-m4_B_C13_U14AAAAA00550.25 AA00
1162jxq-m5_B_C13_U14AAAAA00660.20 AA00
1172jxq-m6_B_C13_U14AAAAA00640.22 AA00
1182jxq-m7_B_C13_U14AAAAA00710.19 AA00
1192jxq-m8_B_C13_U14AAAAA00390.21 AA00
1202jxq-m9_B_C13_U14AAAAA00600.20 AA00
1212jxq-m10_B_U14_C15AAAAA00760.16 AA00
1222jxq-m1_B_U14_C15AAAAA00620.24 AA00
1232jxq-m2_B_U14_C15AAAAA00710.19 AA00
1242jxq-m3_B_U14_C15AAAAA00690.18 AA00
1252jxq-m4_B_U14_C15AAAAA00580.26 AA00
1262jxq-m5_B_U14_C15AAAAA00670.17 AA00
1272jxq-m6_B_U14_C15AAAAA00600.24 AA00
1282jxq-m7_B_U14_C15AAAAA00670.17 AA00
1292jxq-m8_B_U14_C15AAAAA00600.20 AA00
1302jxq-m9_B_U14_C15AAAAA00590.17 AA00
1312jxq-m10_B_C15_U16AAAAA00670.17 AA00
1322jxq-m1_B_C15_U16AAAAA00600.17 AA00
1332jxq-m2_B_C15_U16AAAAA00580.19 AA00
1342jxq-m3_B_C15_U16AAAAA00700.19 AA00
1352jxq-m4_B_C15_U16AAAAA00740.22 AA00
1362jxq-m5_B_C15_U16AAAAA00670.18 AA00
1372jxq-m6_B_C15_U16AAAAA00580.26 AA00
1382jxq-m7_B_C15_U16AAAAA00740.17 AA00
1392jxq-m8_B_C15_U16AAAAA00670.19 AA00
1402jxq-m9_B_C15_U16AAAAA00710.18 AA00
1412jxq-m10_B_U16_C17AAAAA00540.18 AA00
1422jxq-m1_B_U16_C17AAAAA00610.17 AA00
1432jxq-m2_B_U16_C17AAAAA00700.17 AA00
1442jxq-m3_B_U16_C17AAAAA00800.15 AA00
1452jxq-m4_B_U16_C17AAAAA00710.17 AA00
1462jxq-m5_B_U16_C17AAAAA04860.15 AA04
1472jxq-m6_B_U16_C17AAAAA00460.19 AA00
1482jxq-m7_B_U16_C17AAAAA00750.16 AA00
1492jxq-m8_B_U16_C17AAAAA00570.20 AA00
1502jxq-m9_B_U16_C17AAAAA00760.16 AA00
1512jxq-m10_B_C17_U18AAAAA00490.23 AA00
1522jxq-m1_B_C17_U18AAAAA04790.19 AA04
1532jxq-m2_B_C17_U18AAAAA00560.20 AA00
1542jxq-m3_B_C17_U18AAAAA00720.18 AA00
1552jxq-m4_B_C17_U18AAAAA00650.18 AA00
1562jxq-m5_B_C17_U18AAAAA00630.23 AA00
1572jxq-m6_B_C17_U18AAAAA00330.27 AA00
1582jxq-m7_B_C17_U18AAAAA00690.17 AA00
1592jxq-m8_B_C17_U18AAAAA00610.23 AA00
1602jxq-m9_B_C17_U18AAAAA00700.19 AA00
1612jxq-m10_B_U18_G19AAAAA00790.18 AA00
1622jxq-m1_B_U18_G19AAAAA00670.21 AA00
1632jxq-m2_B_U18_G19AAAAA00470.19 AA00
1642jxq-m3_B_U18_G19AAAAA00840.15 AA00
1652jxq-m4_B_U18_G19AAAAA00780.16 AA00
1662jxq-m5_B_U18_G19AAAAA00720.18 AA00
1672jxq-m6_B_U18_G19AAAAA00640.18 AA00
1682jxq-m7_B_U18_G19AAAAA00780.15 AA00
1692jxq-m8_B_U18_G19AAAAA00730.18 AA00
1702jxq-m9_B_U18_G19AAAAA00820.15 AA00
1712jxq-m10_B_G19_C20AAAAA00630.18 AA00
1722jxq-m1_B_G19_C20AAAAA00570.18 AA00
1732jxq-m2_B_G19_C20AAAAA00550.22 AA00
1742jxq-m3_B_G19_C20AAAAA00650.17 AA00
1752jxq-m4_B_G19_C20AAAAA00630.17 AA00
1762jxq-m5_B_G19_C20AAAAA00700.18 AA00
1772jxq-m6_B_G19_C20AAAAA00440.22 AA00
1782jxq-m7_B_G19_C20AAAAA00640.17 AA00
1792jxq-m8_B_G19_C20AAAAA00640.18 AA00
1802jxq-m9_B_G19_C20AAAAA00530.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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