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Conformers: ABBIImiBZICOPNSYNN
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Structure of a high affinity anti-NFkB RNA aptamer

Results of the assignment of 280 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012jwv-m10_A_G1_A2AAAAA00960.13 AA00
0022jwv-m1_A_G1_A2AAAAA00960.13 AA00
0032jwv-m2_A_G1_A2AAAAA00940.16 AA00
0042jwv-m3_A_G1_A2AAAAA00970.12 AA00
0052jwv-m4_A_G1_A2AAAAA00960.17 AA00
0062jwv-m5_A_G1_A2AAAAA00970.14 AA00
0072jwv-m6_A_G1_A2AAAAA00950.15 AA00
0082jwv-m7_A_G1_A2AAAAA00950.13 AA00
0092jwv-m8_A_G1_A2AAAAA00950.15 AA00
0102jwv-m9_A_G1_A2AAAAA00940.15 AA00
0112jwv-m10_A_A2_U3AAAAA00990.13 AA00
0122jwv-m1_A_A2_U3AAAAA00990.13 AA00
0132jwv-m2_A_A2_U3AAAAA00990.12 AA00
0142jwv-m3_A_A2_U3AAAAA00990.12 AA00
0152jwv-m4_A_A2_U3AAAAA00990.17 AA00
0162jwv-m5_A_A2_U3AAAAA00990.15 AA00
0172jwv-m6_A_A2_U3AAAAA00990.11 AA00
0182jwv-m7_A_A2_U3AAAAA00990.12 AA00
0192jwv-m8_A_A2_U3AAAAA00990.11 AA00
0202jwv-m9_A_A2_U3AAAAA00990.11 AA00
0212jwv-m10_A_U3_A4AAAAA00980.13 AA00
0222jwv-m1_A_U3_A4AAAAA00980.14 AA00
0232jwv-m2_A_U3_A4AAAAA00980.12 AA00
0242jwv-m3_A_U3_A4AAAAA00980.12 AA00
0252jwv-m4_A_U3_A4AAAAA00980.18 AA00
0262jwv-m5_A_U3_A4AAAAA00980.16 AA00
0272jwv-m6_A_U3_A4AAAAA00980.10 AA00
0282jwv-m7_A_U3_A4AAAAA00980.12 AA00
0292jwv-m8_A_U3_A4AAAAA00980.11 AA00
0302jwv-m9_A_U3_A4AAAAA00980.11 AA00
0312jwv-m10_A_A4_C5AAAAA00990.11 AA00
0322jwv-m1_A_A4_C5AAAAA00990.17 AA00
0332jwv-m2_A_A4_C5AAAAA00980.12 AA00
0342jwv-m3_A_A4_C5AAAAA00980.10 AA00
0352jwv-m4_A_A4_C5AAAAA00970.22 AA00
0362jwv-m5_A_A4_C5AAAAA00980.20 AA00
0372jwv-m6_A_A4_C5AAAAA00990.11 AA00
0382jwv-m7_A_A4_C5AAAAA00980.11 AA00
0392jwv-m8_A_A4_C5AAAAA00980.10 AA00
0402jwv-m9_A_A4_C5AAAAA00990.10 AA00
0412jwv-m10_A_C5_U6AAAAA00920.17 AA00
0422jwv-m1_A_C5_U6A-BAB01280.37 AB01
0432jwv-m2_A_C5_U6AAAAA00960.16 AA00
0442jwv-m3_A_C5_U6AAAAA00940.16 AA00
0452jwv-m4_A_C5_U6A-BAB04400.43 AB04
0462jwv-m5_A_C5_U6A-BAB04380.44 AB04
0472jwv-m6_A_C5_U6AAAAA00950.20 AA00
0482jwv-m7_A_C5_U6AAAAA00930.17 AA00
0492jwv-m8_A_C5_U6AAAAA00950.15 AA00
0502jwv-m9_A_C5_U6AAAAA00960.16 AA00
0512jwv-m10_A_U6_U7AAAAA00930.28 AA00
0522jwv-m1_A_U6_U7B-ABA0590.30 BA05
0532jwv-m2_A_U6_U7AAAAA00790.28 AA00
0542jwv-m3_A_U6_U7AAAAA00920.23 AA00
0552jwv-m4_A_U6_U7B-ABA05130.30 BA05
0562jwv-m5_A_U6_U7NANNANT00.43 BA08
0572jwv-m6_A_U6_U7A-BAB04330.46 AB04
0582jwv-m7_A_U6_U7AAAAA00910.27 AA00
0592jwv-m8_A_U6_U7AAAAA00840.27 AA00
0602jwv-m9_A_U6_U7AAAAA00810.27 AA00
0612jwv-m10_A_U7_G8AAAAA09390.37 AA09
0622jwv-m1_A_U7_G8AAAAA09370.40 AA09
0632jwv-m2_A_U7_G8AAAAA09380.38 AA09
0642jwv-m3_A_U7_G8AAAAA09380.38 AA09
0652jwv-m4_A_U7_G8AAAAA09390.38 AA09
0662jwv-m5_A_U7_G8AAAAA09400.37 AA09
0672jwv-m6_A_U7_G8B-ABA05490.40 BA05
0682jwv-m7_A_U7_G8AAAAA09360.36 AA09
0692jwv-m8_A_U7_G8AAAAA09400.35 AA09
0702jwv-m9_A_U7_G8AAAAA09390.37 AA09
0712jwv-m10_A_G8_A9AAuAA12340.41 AA12
0722jwv-m1_A_G8_A9AAuAA12370.36 AA12
0732jwv-m2_A_G8_A9NANNANT00.42 AA12
0742jwv-m3_A_G8_A9AAuAA12390.32 AA12
0752jwv-m4_A_G8_A9NANNANT00.41 AA12
0762jwv-m5_A_G8_A9AAuAA12420.41 AA12
0772jwv-m6_A_G8_A9AAuAA12710.41 AA12
0782jwv-m7_A_G8_A9AAuAA12410.38 AA12
0792jwv-m8_A_G8_A9AAuAA12400.43 AA12
0802jwv-m9_A_G8_A9NANNANT00.42 AA12
0812jwv-m10_A_A9_A10AAAAA08350.45 AA08
0822jwv-m1_A_A9_A10AAAAA08350.43 AA08
0832jwv-m2_A_A9_A10AAAAA08360.43 AA08
0842jwv-m3_A_A9_A10AAAAA08280.46 AA08
0852jwv-m4_A_A9_A10AAAAA08340.45 AA08
0862jwv-m5_A_A9_A10AAAAA08310.46 AA08
0872jwv-m6_A_A9_A10AAAAA08310.44 AA08
0882jwv-m7_A_A9_A10AAAAA08340.43 AA08
0892jwv-m8_A_A9_A10AAAAA08340.43 AA08
0902jwv-m9_A_A9_A10AAAAA08360.44 AA08
0912jwv-m10_A_A10_A11AAAAA00990.16 AA00
0922jwv-m1_A_A10_A11AAAAA00990.12 AA00
0932jwv-m2_A_A10_A11AAAAA00980.14 AA00
0942jwv-m3_A_A10_A11AAAAA00990.12 AA00
0952jwv-m4_A_A10_A11AAAAA00990.14 AA00
0962jwv-m5_A_A10_A11AAAAA00980.14 AA00
0972jwv-m6_A_A10_A11AAAAA00990.12 AA00
0982jwv-m7_A_A10_A11AAAAA00980.12 AA00
0992jwv-m8_A_A10_A11AAAAA00980.13 AA00
1002jwv-m9_A_A10_A11AAAAA00990.14 AA00
1012jwv-m10_A_A11_C12AAAAA00890.24 AA00
1022jwv-m1_A_A11_C12AAAAA00910.19 AA00
1032jwv-m2_A_A11_C12AAAAA00920.21 AA00
1042jwv-m3_A_A11_C12AAAAA00900.19 AA00
1052jwv-m4_A_A11_C12AAAAA00900.20 AA00
1062jwv-m5_A_A11_C12AAAAA00880.22 AA00
1072jwv-m6_A_A11_C12AAAAA00900.19 AA00
1082jwv-m7_A_A11_C12AAAAA00900.20 AA00
1092jwv-m8_A_A11_C12AAAAA00900.20 AA00
1102jwv-m9_A_A11_C12AAAAA00920.20 AA00
1112jwv-m10_A_C12_U13AAAAA00890.28 AA00
1122jwv-m1_A_C12_U13AAAAA00830.28 AA00
1132jwv-m2_A_C12_U13AAAAA00900.25 AA00
1142jwv-m3_A_C12_U13AAAAA00790.28 AA00
1152jwv-m4_A_C12_U13AAAAA00810.29 AA00
1162jwv-m5_A_C12_U13AAAAA00890.25 AA00
1172jwv-m6_A_C12_U13AAAAA00790.29 AA00
1182jwv-m7_A_C12_U13AAAAA00880.26 AA00
1192jwv-m8_A_C12_U13AAAAA00890.26 AA00
1202jwv-m9_A_C12_U13AAAAA00890.25 AA00
1212jwv-m10_A_U13_G14AAAAA00930.24 AA00
1222jwv-m1_A_U13_G14AAAAA00920.21 AA00
1232jwv-m2_A_U13_G14AAAAA00940.22 AA00
1242jwv-m3_A_U13_G14AAAAA00910.21 AA00
1252jwv-m4_A_U13_G14AAAAA00920.21 AA00
1262jwv-m5_A_U13_G14AAAAA00920.21 AA00
1272jwv-m6_A_U13_G14AAAAA00930.22 AA00
1282jwv-m7_A_U13_G14AAAAA00930.23 AA00
1292jwv-m8_A_U13_G14AAAAA00930.24 AA00
1302jwv-m9_A_U13_G14AAAAA00930.23 AA00
1312jwv-m10_A_G14_U15OPNOP04540.42 OP04
1322jwv-m1_A_G14_U15OPNOP04510.42 OP04
1332jwv-m2_A_G14_U15OPNOP04580.43 OP04
1342jwv-m3_A_G14_U15OPNOP04530.42 OP04
1352jwv-m4_A_G14_U15OPNOP04580.41 OP04
1362jwv-m5_A_G14_U15OPNOP04550.42 OP04
1372jwv-m6_A_G14_U15OPNOP04610.41 OP04
1382jwv-m7_A_G14_U15OPNOP04590.41 OP04
1392jwv-m8_A_G14_U15OPNOP04620.40 OP04
1402jwv-m9_A_G14_U15OPNOP04580.43 OP04
1412jwv-m10_A_U15_A16NANNANT00.64 AA00
1422jwv-m1_A_U15_A16NANNANT00.65 AA00
1432jwv-m2_A_U15_A16NANNANT00.64 AA00
1442jwv-m3_A_U15_A16NANNANT00.65 AA00
1452jwv-m4_A_U15_A16NANNANT00.64 AA00
1462jwv-m5_A_U15_A16NANNANT00.65 AA00
1472jwv-m6_A_U15_A16NANNANT00.64 AA00
1482jwv-m7_A_U15_A16NANNANT00.59 AA04
1492jwv-m8_A_U15_A16NANNANT00.59 AA04
1502jwv-m9_A_U15_A16NANNANT00.59 AA04
1512jwv-m10_A_A16_A17AAAAA0080.45 AA00
1522jwv-m1_A_A16_A17AAAAA0080.43 AA00
1532jwv-m2_A_A16_A17AAAAA00100.46 AA00
1542jwv-m3_A_A16_A17AAAAA0080.41 AA00
1552jwv-m4_A_A16_A17AAAAA0080.44 AA00
1562jwv-m5_A_A16_A17AAAAA0070.45 AA00
1572jwv-m6_A_A16_A17AAAAA00110.43 AA00
1582jwv-m7_A_A16_A17AAAAA00100.45 AA00
1592jwv-m8_A_A16_A17AAAAA00110.45 AA00
1602jwv-m9_A_A16_A17AAAAA00110.43 AA00
1612jwv-m10_A_A17_G18AAAAA00320.48 AA00
1622jwv-m1_A_A17_G18AAAAA00240.47 AA00
1632jwv-m2_A_A17_G18AAAAA00160.52 AA00
1642jwv-m3_A_A17_G18AAAAA00220.47 AA00
1652jwv-m4_A_A17_G18AAAAA00240.47 AA00
1662jwv-m5_A_A17_G18AAAAA00220.48 AA00
1672jwv-m6_A_A17_G18AAAAA00230.48 AA00
1682jwv-m7_A_A17_G18AAAAA00210.49 AA00
1692jwv-m8_A_A17_G18AAAAA00180.51 AA00
1702jwv-m9_A_A17_G18AAAAA00150.52 AA00
1712jwv-m10_A_G18_G19AAwAA01760.32 AA01
1722jwv-m1_A_G18_G19AAwAA01770.32 AA01
1732jwv-m2_A_G18_G19AAwAA01790.30 AA01
1742jwv-m3_A_G18_G19AAwAA01770.32 AA01
1752jwv-m4_A_G18_G19AAwAA01760.33 AA01
1762jwv-m5_A_G18_G19AAwAA01750.33 AA01
1772jwv-m6_A_G18_G19AAwAA01670.36 AA01
1782jwv-m7_A_G18_G19AAwAA01700.34 AA01
1792jwv-m8_A_G18_G19AAwAA01690.35 AA01
1802jwv-m9_A_G18_G19AAwAA01790.30 AA01
1812jwv-m10_A_G19_U20AAAAA00880.20 AA00
1822jwv-m1_A_G19_U20AAAAA00880.20 AA00
1832jwv-m2_A_G19_U20AAAAA00870.21 AA00
1842jwv-m3_A_G19_U20AAAAA00880.19 AA00
1852jwv-m4_A_G19_U20AAAAA00890.20 AA00
1862jwv-m5_A_G19_U20AAAAA00890.19 AA00
1872jwv-m6_A_G19_U20AAAAA00890.18 AA00
1882jwv-m7_A_G19_U20AAAAA00890.18 AA00
1892jwv-m8_A_G19_U20AAAAA00890.19 AA00
1902jwv-m9_A_G19_U20AAAAA00870.20 AA00
1912jwv-m10_A_U20_U21AAAAA00980.25 AA00
1922jwv-m1_A_U20_U21AAAAA00980.22 AA00
1932jwv-m2_A_U20_U21AAAAA00970.24 AA00
1942jwv-m3_A_U20_U21AAAAA00980.22 AA00
1952jwv-m4_A_U20_U21AAAAA00970.24 AA00
1962jwv-m5_A_U20_U21AAAAA00970.21 AA00
1972jwv-m6_A_U20_U21AAAAA00970.22 AA00
1982jwv-m7_A_U20_U21AAAAA00970.22 AA00
1992jwv-m8_A_U20_U21AAAAA00980.21 AA00
2002jwv-m9_A_U20_U21AAAAA00980.22 AA00
2012jwv-m10_A_U21_G22AAAAA00700.36 AA00
2022jwv-m1_A_U21_G22AAAAA00400.39 AA00
2032jwv-m2_A_U21_G22AAAAA00700.35 AA00
2042jwv-m3_A_U21_G22AAAAA00480.36 AA00
2052jwv-m4_A_U21_G22AAAAA00410.38 AA00
2062jwv-m5_A_U21_G22AAAAA00670.31 AA00
2072jwv-m6_A_U21_G22AAAAA00370.39 AA00
2082jwv-m7_A_U21_G22AAAAA00520.36 AA00
2092jwv-m8_A_U21_G22AAAAA00720.32 AA00
2102jwv-m9_A_U21_G22AAAAA00700.32 AA00
2112jwv-m10_A_G22_G23AAAAA00190.32 AA00
2122jwv-m1_A_G22_G23AAAAA09430.38 AA09
2132jwv-m2_A_G22_G23AAuAA12810.29 AA12
2142jwv-m3_A_G22_G23AAAAA09340.38 AA09
2152jwv-m4_A_G22_G23AAAAA09380.37 AA09
2162jwv-m5_A_G22_G23AAAAA00260.31 AA00
2172jwv-m6_A_G22_G23AAAAA09400.43 AA09
2182jwv-m7_A_G22_G23AAAAA00120.29 AA00
2192jwv-m8_A_G22_G23AAAAA00200.32 AA00
2202jwv-m9_A_G22_G23AAAAA00160.33 AA00
2212jwv-m10_A_G23_C24AAuAA12440.36 AA12
2222jwv-m1_A_G23_C24NANNANT00.33 AA12
2232jwv-m2_A_G23_C24AAuAA12100.62 AA12
2242jwv-m3_A_G23_C24NANNANT00.34 AA12
2252jwv-m4_A_G23_C24AAuAA12450.38 AA12
2262jwv-m5_A_G23_C24AAuAA12100.56 AA12
2272jwv-m6_A_G23_C24AAuAA12280.38 AA12
2282jwv-m7_A_G23_C24AAuAA12440.36 AA12
2292jwv-m8_A_G23_C24AAuAA12390.44 AA12
2302jwv-m9_A_G23_C24AAuAA12420.43 AA12
2312jwv-m10_A_C24_G25AAAAA00970.14 AA00
2322jwv-m1_A_C24_G25AAAAA00930.19 AA00
2332jwv-m2_A_C24_G25AAAAA00940.19 AA00
2342jwv-m3_A_C24_G25AAAAA00940.18 AA00
2352jwv-m4_A_C24_G25AAAAA00980.18 AA00
2362jwv-m5_A_C24_G25AAAAA00940.18 AA00
2372jwv-m6_A_C24_G25AAAAA00960.16 AA00
2382jwv-m7_A_C24_G25AAAAA00950.16 AA00
2392jwv-m8_A_C24_G25AAAAA00970.15 AA00
2402jwv-m9_A_C24_G25AAAAA00940.18 AA00
2412jwv-m10_A_G25_U26AAAAA00980.13 AA00
2422jwv-m1_A_G25_U26AAAAA00980.12 AA00
2432jwv-m2_A_G25_U26AAAAA00980.14 AA00
2442jwv-m3_A_G25_U26AAAAA00990.11 AA00
2452jwv-m4_A_G25_U26AAAAA00970.18 AA00
2462jwv-m5_A_G25_U26AAAAA00980.13 AA00
2472jwv-m6_A_G25_U26AAAAA00980.12 AA00
2482jwv-m7_A_G25_U26AAAAA00990.12 AA00
2492jwv-m8_A_G25_U26AAAAA00980.12 AA00
2502jwv-m9_A_G25_U26AAAAA00990.13 AA00
2512jwv-m10_A_U26_A27AAAAA00970.14 AA00
2522jwv-m1_A_U26_A27AAAAA00980.14 AA00
2532jwv-m2_A_U26_A27AAAAA00970.14 AA00
2542jwv-m3_A_U26_A27AAAAA00970.14 AA00
2552jwv-m4_A_U26_A27AAAAA00970.18 AA00
2562jwv-m5_A_U26_A27AAAAA00970.14 AA00
2572jwv-m6_A_U26_A27AAAAA00960.14 AA00
2582jwv-m7_A_U26_A27AAAAA00970.13 AA00
2592jwv-m8_A_U26_A27AAAAA00960.14 AA00
2602jwv-m9_A_U26_A27AAAAA00980.14 AA00
2612jwv-m10_A_A27_U28AAAAA00990.14 AA00
2622jwv-m1_A_A27_U28AAAAA00990.14 AA00
2632jwv-m2_A_A27_U28AAAAA00960.16 AA00
2642jwv-m3_A_A27_U28AAAAA00990.14 AA00
2652jwv-m4_A_A27_U28AAAAA00960.19 AA00
2662jwv-m5_A_A27_U28AAAAA00990.15 AA00
2672jwv-m6_A_A27_U28AAAAA00970.15 AA00
2682jwv-m7_A_A27_U28AAAAA00990.14 AA00
2692jwv-m8_A_A27_U28AAAAA00970.15 AA00
2702jwv-m9_A_A27_U28AAAAA00960.15 AA00
2712jwv-m10_A_U28_C29AAAAA00940.20 AA00
2722jwv-m1_A_U28_C29AAAAA00910.22 AA00
2732jwv-m2_A_U28_C29AAAAA00790.22 AA00
2742jwv-m3_A_U28_C29AAAAA00920.21 AA00
2752jwv-m4_A_U28_C29AAAAA00730.27 AA00
2762jwv-m5_A_U28_C29AAAAA00910.23 AA00
2772jwv-m6_A_U28_C29AAAAA00810.23 AA00
2782jwv-m7_A_U28_C29AAAAA00940.21 AA00
2792jwv-m8_A_U28_C29AAAAA00800.22 AA00
2802jwv-m9_A_U28_C29AAAAA00790.21 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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