DNATCO v4.1: results

CPD lesion containing RNA Polymerase II elongation complex C

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2ja7_1_DA1_DA2	NAN	NANT	0	0.54	BB00
02	2ja7_1_DA2_DG3	NAN	NANT	0	0.57	BB17
03	2ja7_1_DG3_DT4	NAN	NANT	0	0.59	BB00
04	2ja7_1_DT4_DA5	NAN	NANT	0	0.56	BB17
05	2ja7_1_DA5_DC6	NAN	NANT	0	0.62	BB17
06	2ja7_1_DC6_DT7	NAN	NANT	0	0.51	BB00
07	2ja7_2_DA10_DG11	BBB	BB00	25	0.38	BB00
08	2ja7_2_DG11_DT12	BBB	BB00	66	0.29	BB00
09	2ja7_2_DT12_DA13	BBB	BB00	22	0.40	BB00
10	2ja7_2_DA13_DC14	BBB	BB00	42	0.30	BB00
11	2ja7_2_DC14_DT15	BBB	BB00	46	0.52	BB00
12	2ja7_2_DT15_DT16	BBB	BB00	36	0.40	BB00
13	2ja7_2_DT16_DT17	BBB	BB00	36	0.32	BB00
14	2ja7_2_DC20_DC21	AAA	AA02	23	0.48	AA02
15	2ja7_2_DC21_BRU22	AAA	AA02	10	0.50	AA02
16	2ja7_2_BRU22_DG23	NAN	NANT	0	0.49	BA10
17	2ja7_2_DG23_DG24	NAN	NANT	0	0.47	AB04
18	2ja7_2_DG24_DT25	NAN	NANT	0	0.47	AA00
19	2ja7_2_DT25_DC26	NAN	NANT	0	0.29	BB17
20	2ja7_2_DC26_DA27	NAN	NANT	0	0.41	BB00
21	2ja7_2_DA27_DT28	NAN	NANT	0	0.62	BB04
22	2ja7_3_U1_C2	AAu	AA12	29	0.44	AA12
23	2ja7_3_C2_G3	NAN	NANT	0	0.73	AA04
24	2ja7_3_G3_A4	AAA	AA00	13	0.30	AA00
25	2ja7_3_A4_C5	AAA	AA00	64	0.21	AA00
26	2ja7_3_C5_C6	AAA	AA00	80	0.15	AA00
27	2ja7_3_C6_A7	AAA	AA00	79	0.14	AA00
28	2ja7_3_A7_G8	AAA	AA00	76	0.30	AA00
29	2ja7_3_G8_G9	AAA	AA00	26	0.38	AA00
30	2ja7_3_G9_A10	AAu	AA12	23	0.49	AA12
31	2ja7_4_DA1_DA2	NAN	NANT	0	0.53	BB00
32	2ja7_4_DA2_DG3	NAN	NANT	0	0.57	BB17
33	2ja7_4_DG3_DT4	NAN	NANT	0	0.59	BB00
34	2ja7_4_DT4_DA5	NAN	NANT	0	0.54	BB17
35	2ja7_4_DA5_DC6	NAN	NANT	0	0.62	BB17
36	2ja7_4_DC6_DT7	BBB	BB00	17	0.53	BB00
37	2ja7_5_DA10_DG11	BBB	BB00	29	0.37	BB00
38	2ja7_5_DG11_DT12	BBB	BB00	71	0.28	BB00
39	2ja7_5_DT12_DA13	BBB	BB00	23	0.39	BB00
40	2ja7_5_DA13_DC14	BBB	BB00	44	0.28	BB00
41	2ja7_5_DC14_DT15	BBB	BB00	47	0.50	BB00
42	2ja7_5_DT15_DT16	BBB	BB00	29	0.41	BB00
43	2ja7_5_DT16_DT17	BBB	BB00	34	0.31	BB00
44	2ja7_5_DC20_DC21	AAA	AA02	25	0.47	AA02
45	2ja7_5_DC21_BRU22	AAA	AA02	8	0.49	AA02
46	2ja7_5_BRU22_DG23	NAN	NANT	0	0.47	BA10
47	2ja7_5_DG23_DG24	NAN	NANT	0	0.55	BB16
48	2ja7_5_DG24_DT25	AAA	AA02	8	0.65	AA02
49	2ja7_5_DT25_DC26	NAN	NANT	0	0.30	BB17
50	2ja7_5_DC26_DA27	NAN	NANT	0	0.33	BB01
51	2ja7_5_DA27_DT28	B12	BB04	13	0.61	BB04
52	2ja7_6_U1_C2	AAu	AA12	32	0.43	AA12
53	2ja7_6_C2_G3	NAN	NANT	0	0.74	AA04
54	2ja7_6_G3_A4	AAA	AA04	64	0.35	AA04
55	2ja7_6_A4_C5	AAA	AA00	63	0.22	AA00
56	2ja7_6_C5_C6	AAA	AA00	78	0.15	AA00
57	2ja7_6_C6_A7	AAA	AA00	82	0.15	AA00
58	2ja7_6_A7_G8	AAA	AA00	77	0.30	AA00
59	2ja7_6_G8_G9	AAA	AA00	27	0.38	AA00
60	2ja7_6_G9_A10	AAu	AA12	29	0.49	AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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