Conformers:
ABBIImiBZICOPNSYNN
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CPD lesion containing RNA Polymerase II elongation complex A
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ja5_P_U1_C2 | AAu | AA12 | 22 | 0.50 |
| 02 | 2ja5_P_C2_G3 | NAN | NANT | 0 | 0.71 |
| 03 | 2ja5_P_G3_A4 | AAA | AA00 | 52 | 0.24 |
| 04 | 2ja5_P_A4_C5 | AAA | AA00 | 82 | 0.17 |
| 05 | 2ja5_P_C5_C6 | AAA | AA00 | 86 | 0.13 |
| 06 | 2ja5_P_C6_A7 | AAA | AA00 | 89 | 0.14 |
| 07 | 2ja5_P_A7_G8 | AAA | AA04 | 86 | 0.21 |
| 08 | 2ja5_P_G8_G9 | AAu | AA12 | 65 | 0.34 |
| 09 | 2ja5_P_G9_A10 | NAN | NANT | 0 | 0.43 |
| 10 | 2ja5_T_DT18_DT19 | NAN | NANT | 0 | 0.55 |
| 11 | 2ja5_T_DT19_DC20 | NAN | NANT | 0 | 0.33 |
| 12 | 2ja5_T_DC20_DC21 | AAA | AA02 | 24 | 0.56 |
| 13 | 2ja5_T_DC21_BRU22 | NAN | NANT | 0 | 0.35 |
| 14 | 2ja5_T_BRU22_DG23 | AAw | AA01 | 12 | 0.30 |
| 15 | 2ja5_T_DG23_DG24 | NAN | NANT | 0 | 0.47 |
| 16 | 2ja5_T_DG24_DT25 | NAN | NANT | 0 | 0.44 |
| 17 | 2ja5_T_DT25_DC26 | NAN | NANT | 0 | 0.38 |
| 18 | 2ja5_T_DC26_DA27 | NAN | NANT | 0 | 0.33 |
| 19 | 2ja5_T_DA27_DT28 | NAN | NANT | 0 | 0.62 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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