Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2-RNA HAIRPIN (G-10) COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2izn_R_A3_U4 | AAA | AA00 | 70 | 0.22 |
| 02 | 2izn_R_U4_C5 | AAA | AA00 | 51 | 0.17 |
| 03 | 2izn_R_C5_G6 | NAN | NANT | 0 | 1.02 |
| 04 | 2izn_R_G6_C7 | NAN | NANT | 0 | 0.76 |
| 05 | 2izn_R_C7_G8 | AAA | AA00 | 54 | 0.27 |
| 06 | 2izn_R_G8_A9 | AAA | AA00 | 81 | 0.23 |
| 07 | 2izn_R_A9_U10 | OPN | OP09 | 55 | 0.27 |
| 08 | 2izn_R_U10_U11 | NAN | NANT | 0 | 0.45 |
| 09 | 2izn_R_U11_A12 | NAN | NANT | 0 | 1.26 |
| 10 | 2izn_R_A12_C13 | NAN | NANT | 0 | 0.60 |
| 11 | 2izn_R_C13_G14 | AAA | AA00 | 85 | 0.17 |
| 12 | 2izn_R_G14_G15 | AAA | AA00 | 77 | 0.28 |
| 13 | 2izn_R_G15_A16 | AAA | AA00 | 90 | 0.15 |
| 14 | 2izn_R_A16_U17 | AAA | AA00 | 94 | 0.09 |
| 15 | 2izn_S_C5_G6 | NAN | NANT | 0 | 0.94 |
| 16 | 2izn_S_G6_C7 | NAN | NANT | 0 | 0.74 |
| 17 | 2izn_S_C7_G8 | AAA | AA00 | 42 | 0.34 |
| 18 | 2izn_S_G8_A9 | AAA | AA00 | 78 | 0.32 |
| 19 | 2izn_S_A9_U10 | OPN | OP09 | 50 | 0.26 |
| 20 | 2izn_S_U10_U11 | NAN | NANT | 0 | 0.36 |
| 21 | 2izn_S_U11_A12 | NAN | NANT | 0 | 1.39 |
| 22 | 2izn_S_A12_C13 | NAN | NANT | 0 | 0.49 |
| 23 | 2izn_S_C13_G14 | AAA | AA00 | 82 | 0.24 |
| 24 | 2izn_S_G14_G15 | AAA | AA00 | 75 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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