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Conformers: ABBIImiBZICOPNSYNN
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Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012isp_T_DC1_DC2BBwBB16610.38 BB16
022isp_T_DC2_DG3BB2BB07500.16 BB07
032isp_T_DG3_DA4B-ABA08810.27 BA08
042isp_T_DA4_DC5AAAAA02280.60 AA02
052isp_T_DC5_DC6NANNANT01.30 OP21
062isp_T_DC6_DG7B-ABA05740.20 BA05
072isp_T_DG7_DC8A-BAB01220.46 AB01
082isp_T_DC8_DG9B12BB04330.41 BB04
092isp_T_DG9_DC10BBBBB00710.17 BB00
102isp_T_DC10_DA11BBBBB00890.19 BB00
112isp_T_DA11_DT12BBBBB01530.19 BB01
122isp_T_DT12_DC13B-ABA05200.39 BA05
132isp_T_DC13_DA14A-BAB01840.18 AB01
142isp_T_DA14_DG15BBBBB00920.10 BB00
152isp_T_DG15_DC16B-ABA01790.19 BA01
162isp_P_DG1_DC2AAAAA04650.40 AA04
172isp_P_DC2_DT3A-BAB02610.32 AB02
182isp_P_DT3_DG4BBBBB00750.23 BB00
192isp_P_DG4_DA5miBBB10900.30 BB10
202isp_P_DA5_DT6BBBBB00840.17 BB00
212isp_P_DT6_DG7BBBBB00260.22 BB00
222isp_P_DG7_DC8B-ABA05750.11 BA05
232isp_P_DC8_DG9B-ABA05410.32 BA05
242isp_D_DG1_DT2BBBBB00700.24 BB00
252isp_D_DT2_DC3NANNANT00.39 BA05
262isp_D_DC3_DG4A-BAB01440.15 AB01
272isp_D_DG4_DG5B12BB04650.23 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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