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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2

Results of the assignment of 240 detected steps in 15 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012iro-m10_A_G1_C2AAAAA00650.33 AA00
0022iro-m11_A_G1_C2AAAAA00660.40 AA00
0032iro-m12_A_G1_C2AAAAA00640.37 AA00
0042iro-m13_A_G1_C2AAAAA00370.33 AA00
0052iro-m14_A_G1_C2AAAAA00750.34 AA00
0062iro-m15_A_G1_C2AAAAA00640.30 AA00
0072iro-m1_A_G1_C2AAAAA00580.42 AA00
0082iro-m2_A_G1_C2AAAAA00660.41 AA00
0092iro-m3_A_G1_C2AAAAA00560.43 AA00
0102iro-m4_A_G1_C2AAAAA00660.34 AA00
0112iro-m5_A_G1_C2AAAAA00610.37 AA00
0122iro-m6_A_G1_C2AAAAA00580.39 AA00
0132iro-m7_A_G1_C2AAAAA00670.40 AA00
0142iro-m8_A_G1_C2AAAAA00630.41 AA00
0152iro-m9_A_G1_C2AAAAA00750.25 AA00
0162iro-m10_A_C2_G3AAAAA00140.50 AA00
0172iro-m11_A_C2_G3AAAAA00620.41 AA00
0182iro-m12_A_C2_G3AAAAA08210.47 AA08
0192iro-m13_A_C2_G3AAAAA00450.43 AA00
0202iro-m14_A_C2_G3AAAAA08110.49 AA08
0212iro-m15_A_C2_G3AAAAA00120.54 AA00
0222iro-m1_A_C2_G3AAAAA08110.46 AA08
0232iro-m2_A_C2_G3AAAAA00110.52 AA00
0242iro-m3_A_C2_G3NANNANT00.56 AA04
0252iro-m4_A_C2_G3AAAAA00120.53 AA00
0262iro-m5_A_C2_G3AAAAA08110.46 AA08
0272iro-m6_A_C2_G3AAAAA00140.53 AA00
0282iro-m7_A_C2_G3AAAAA00600.43 AA00
0292iro-m8_A_C2_G3AAAAA0890.48 AA08
0302iro-m9_A_C2_G3AAAAA00540.47 AA00
0312iro-m10_A_G3_G4A-BAB01780.25 AB01
0322iro-m11_A_G3_G4A-BAB05760.30 AB05
0332iro-m12_A_G3_G4NANNANT00.89 BB02
0342iro-m13_A_G3_G4A-BAB01680.26 AB01
0352iro-m14_A_G3_G4A-BAB01690.24 AB01
0362iro-m15_A_G3_G4A-BAB01820.24 AB01
0372iro-m1_A_G3_G4A-BAB01730.28 AB01
0382iro-m2_A_G3_G4A-BAB01790.25 AB01
0392iro-m3_A_G3_G4NANNANT00.60 BB03
0402iro-m4_A_G3_G4A-BAB01800.25 AB01
0412iro-m5_A_G3_G4A-BAB01660.28 AB01
0422iro-m6_A_G3_G4A-BAB01680.26 AB01
0432iro-m7_A_G3_G4A-BAB05760.28 AB05
0442iro-m8_A_G3_G4A-BAB01820.26 AB01
0452iro-m9_A_G3_G4A-BAB05780.29 AB05
0462iro-m10_A_G4_A5NANNANT00.92 OP15
0472iro-m11_A_G4_A5NANNANT00.65 OP15
0482iro-m12_A_G4_A5NANNANT00.80 OP10
0492iro-m13_A_G4_A5NANNANT00.64 OP15
0502iro-m14_A_G4_A5NANNANT00.54 OP10
0512iro-m15_A_G4_A5NANNANT00.89 OP15
0522iro-m1_A_G4_A5NANNANT00.86 OP15
0532iro-m2_A_G4_A5NANNANT00.81 OP15
0542iro-m3_A_G4_A5NANNANT00.82 OP15
0552iro-m4_A_G4_A5NANNANT00.94 OP15
0562iro-m5_A_G4_A5NANNANT00.68 OP15
0572iro-m6_A_G4_A5NANNANT00.58 OP15
0582iro-m7_A_G4_A5NANNANT00.60 OP15
0592iro-m8_A_G4_A5NANNANT00.92 OP15
0602iro-m9_A_G4_A5NANNANT00.71 OP15
0612iro-m10_A_A5_U6AAAAA00730.29 AA00
0622iro-m11_A_A5_U6AAAAA08420.33 AA08
0632iro-m12_A_A5_U6NANNANT00.68 AA11
0642iro-m13_A_A5_U6AAAAA08690.29 AA08
0652iro-m14_A_A5_U6AAAAA08660.29 AA08
0662iro-m15_A_A5_U6AAwAA01110.29 AA01
0672iro-m1_A_A5_U6AAAAA00490.33 AA00
0682iro-m2_A_A5_U6AAAAA00800.28 AA00
0692iro-m3_A_A5_U6AAAAA00890.25 AA00
0702iro-m4_A_A5_U6NANNANT00.49 AA06
0712iro-m5_A_A5_U6AAAAA08700.33 AA08
0722iro-m6_A_A5_U6AAAAA08850.17 AA08
0732iro-m7_A_A5_U6AAAAA08610.30 AA08
0742iro-m8_A_A5_U6AAAAA00780.25 AA00
0752iro-m9_A_A5_U6AAAAA08740.28 AA08
0762iro-m10_A_U6_G7AAAAA08500.46 AA08
0772iro-m11_A_U6_G7AAAAA0890.69 AA08
0782iro-m12_A_U6_G7NANNANT00.87 AA00
0792iro-m13_A_U6_G7AAAAA08320.56 AA08
0802iro-m14_A_U6_G7AAAAA08410.49 AA08
0812iro-m15_A_U6_G7AAAAA04330.73 AA04
0822iro-m1_A_U6_G7AAAAA00230.48 AA00
0832iro-m2_A_U6_G7AAAAA08290.45 AA08
0842iro-m3_A_U6_G7AAAAA00110.52 AA00
0852iro-m4_A_U6_G7AAAAA04190.73 AA04
0862iro-m5_A_U6_G7AAAAA00150.58 AA00
0872iro-m6_A_U6_G7NANNANT00.75 AA04
0882iro-m7_A_U6_G7NANNANT00.81 AA04
0892iro-m8_A_U6_G7AAAAA08420.48 AA08
0902iro-m9_A_U6_G7AAAAA08460.46 AA08
0912iro-m10_A_G7_C8AAAAA00670.21 AA00
0922iro-m11_A_G7_C8AAAAA00740.30 AA00
0932iro-m12_A_G7_C8AAAAA00740.32 AA00
0942iro-m13_A_G7_C8AAAAA00670.20 AA00
0952iro-m14_A_G7_C8AAAAA00700.22 AA00
0962iro-m15_A_G7_C8AAAAA00580.24 AA00
0972iro-m1_A_G7_C8AAAAA00690.17 AA00
0982iro-m2_A_G7_C8AAAAA00640.17 AA00
0992iro-m3_A_G7_C8AAAAA00680.18 AA00
1002iro-m4_A_G7_C8AAAAA00590.20 AA00
1012iro-m5_A_G7_C8AAAAA00720.19 AA00
1022iro-m6_A_G7_C8AAAAA00830.25 AA00
1032iro-m7_A_G7_C8AAAAA00680.22 AA00
1042iro-m8_A_G7_C8AAAAA00650.18 AA00
1052iro-m9_A_G7_C8AAAAA00690.21 AA00
1062iro-m10_A_C8_U9AAAAA08510.39 AA08
1072iro-m11_A_C8_U9AAAAA00840.23 AA00
1082iro-m12_A_C8_U9AAAAA00670.24 AA00
1092iro-m13_A_C8_U9AAAAA08470.42 AA08
1102iro-m14_A_C8_U9AAAAA00520.32 AA00
1112iro-m15_A_C8_U9AAAAA00600.27 AA00
1122iro-m1_A_C8_U9AAAAA00600.31 AA00
1132iro-m2_A_C8_U9AAAAA00670.24 AA00
1142iro-m3_A_C8_U9AAAAA00590.31 AA00
1152iro-m4_A_C8_U9AAAAA00610.27 AA00
1162iro-m5_A_C8_U9AAAAA00610.28 AA00
1172iro-m6_A_C8_U9AAAAA00610.33 AA00
1182iro-m7_A_C8_U9AAAAA00590.30 AA00
1192iro-m8_A_C8_U9AAAAA00600.28 AA00
1202iro-m9_A_C8_U9AAAAA00580.29 AA00
1212iro-m10_B_G10_C11AAAAA00880.20 AA00
1222iro-m11_B_G10_C11AAAAA00780.23 AA00
1232iro-m12_B_G10_C11AAAAA00500.29 AA00
1242iro-m13_B_G10_C11AAAAA00600.25 AA00
1252iro-m14_B_G10_C11AAAAA00600.39 AA00
1262iro-m15_B_G10_C11AAAAA00670.24 AA00
1272iro-m1_B_G10_C11AAAAA00550.44 AA00
1282iro-m2_B_G10_C11AAAAA00690.37 AA00
1292iro-m3_B_G10_C11AAAAA00590.41 AA00
1302iro-m4_B_G10_C11AAAAA00400.32 AA00
1312iro-m5_B_G10_C11AAAAA00600.40 AA00
1322iro-m6_B_G10_C11AAAAA00590.37 AA00
1332iro-m7_B_G10_C11AAAAA00700.36 AA00
1342iro-m8_B_G10_C11AAAAA00440.37 AA00
1352iro-m9_B_G10_C11AAAAA00560.41 AA00
1362iro-m10_B_C11_G12AAAAA00170.49 AA00
1372iro-m11_B_C11_G12AAAAA00610.40 AA00
1382iro-m12_B_C11_G12AAAAA00750.31 AA00
1392iro-m13_B_C11_G12AAAAA00390.39 AA00
1402iro-m14_B_C11_G12AAAAA00220.47 AA00
1412iro-m15_B_C11_G12AAAAA00720.37 AA00
1422iro-m1_B_C11_G12AAAAA09120.44 AA09
1432iro-m2_B_C11_G12AAAAA00110.50 AA00
1442iro-m3_B_C11_G12AAAAA00210.46 AA00
1452iro-m4_B_C11_G12AAAAA00550.33 AA00
1462iro-m5_B_C11_G12AAAAA08150.44 AA08
1472iro-m6_B_C11_G12AAAAA00650.36 AA00
1482iro-m7_B_C11_G12AAAAA08710.26 AA08
1492iro-m8_B_C11_G12AAAAA00530.30 AA00
1502iro-m9_B_C11_G12AAAAA00260.43 AA00
1512iro-m10_B_G12_G13A-BAB01820.25 AB01
1522iro-m11_B_G12_G13A-BAB05760.32 AB05
1532iro-m12_B_G12_G13A-BAB05430.30 AB05
1542iro-m13_B_G12_G13A-BAB01460.33 AB01
1552iro-m14_B_G12_G13A-BAB01280.41 AB01
1562iro-m15_B_G12_G13A-BAB01640.32 AB01
1572iro-m1_B_G12_G13A-BAB01820.27 AB01
1582iro-m2_B_G12_G13A-BAB01730.28 AB01
1592iro-m3_B_G12_G13A-BAB01710.29 AB01
1602iro-m4_B_G12_G13A-BAB01720.30 AB01
1612iro-m5_B_G12_G13A-BAB01680.32 AB01
1622iro-m6_B_G12_G13A-BAB05510.41 AB05
1632iro-m7_B_G12_G13A-BAB01600.34 AB01
1642iro-m8_B_G12_G13A-BAB01750.26 AB01
1652iro-m9_B_G12_G13A-BAB01180.35 AB01
1662iro-m10_B_G13_A14NANNANT00.98 OP15
1672iro-m11_B_G13_A14NANNANT00.63 OP26
1682iro-m12_B_G13_A14NANNANT01.11 OP15
1692iro-m13_B_G13_A14NANNANT00.73 OP10
1702iro-m14_B_G13_A14NANNANT01.29 BA16
1712iro-m15_B_G13_A14NANNANT00.57 OP26
1722iro-m1_B_G13_A14NANNANT00.85 OP15
1732iro-m2_B_G13_A14NANNANT00.92 OP15
1742iro-m3_B_G13_A14NANNANT00.88 OP15
1752iro-m4_B_G13_A14NANNANT01.05 OP15
1762iro-m5_B_G13_A14NANNANT01.03 OP15
1772iro-m6_B_G13_A14NANNANT00.77 OP26
1782iro-m7_B_G13_A14NANNANT00.60 OP26
1792iro-m8_B_G13_A14NANNANT00.61 OP10
1802iro-m9_B_G13_A14NANNANT00.66 OP26
1812iro-m10_B_A14_U15AAAAA00440.32 AA00
1822iro-m11_B_A14_U15AAAAA00130.38 AA00
1832iro-m12_B_A14_U15AAAAA08540.33 AA08
1842iro-m13_B_A14_U15AAAAA00290.26 AA00
1852iro-m14_B_A14_U15AAAAA08710.28 AA08
1862iro-m15_B_A14_U15NANNANT00.61 AA11
1872iro-m1_B_A14_U15AAAAA00680.28 AA00
1882iro-m2_B_A14_U15AAAAA00800.27 AA00
1892iro-m3_B_A14_U15AAAAA00720.31 AA00
1902iro-m4_B_A14_U15AAwAA01570.28 AA01
1912iro-m5_B_A14_U15AAAAA08590.32 AA08
1922iro-m6_B_A14_U15AAAAA00170.37 AA00
1932iro-m7_B_A14_U15AAAAA00350.32 AA00
1942iro-m8_B_A14_U15AAAAA00420.34 AA00
1952iro-m9_B_A14_U15AAAAA00110.41 AA00
1962iro-m10_B_U15_G16AAAAA00140.49 AA00
1972iro-m11_B_U15_G16AAAAA08400.55 AA08
1982iro-m12_B_U15_G16AAAAA00380.44 AA00
1992iro-m13_B_U15_G16AAAAA00140.49 AA00
2002iro-m14_B_U15_G16AAAAA00140.51 AA00
2012iro-m15_B_U15_G16AAAAA00110.64 AA00
2022iro-m1_B_U15_G16AAAAA00210.49 AA00
2032iro-m2_B_U15_G16AAAAA00170.49 AA00
2042iro-m3_B_U15_G16AAAAA00240.47 AA00
2052iro-m4_B_U15_G16AAAAA0070.69 AA00
2062iro-m5_B_U15_G16AAAAA00130.50 AA00
2072iro-m6_B_U15_G16AAAAA00180.47 AA00
2082iro-m7_B_U15_G16AAAAA08440.53 AA08
2092iro-m8_B_U15_G16AAAAA00200.48 AA00
2102iro-m9_B_U15_G16AAAAA08380.57 AA08
2112iro-m10_B_G16_C17AAAAA00700.18 AA00
2122iro-m11_B_G16_C17AAAAA00640.18 AA00
2132iro-m12_B_G16_C17AAAAA00690.19 AA00
2142iro-m13_B_G16_C17AAAAA00690.15 AA00
2152iro-m14_B_G16_C17AAAAA00730.23 AA00
2162iro-m15_B_G16_C17AAAAA00630.25 AA00
2172iro-m1_B_G16_C17AAAAA00680.18 AA00
2182iro-m2_B_G16_C17AAAAA00690.16 AA00
2192iro-m3_B_G16_C17AAAAA00700.18 AA00
2202iro-m4_B_G16_C17AAAAA00830.22 AA00
2212iro-m5_B_G16_C17AAAAA00670.19 AA00
2222iro-m6_B_G16_C17AAAAA00680.17 AA00
2232iro-m7_B_G16_C17AAAAA00640.17 AA00
2242iro-m8_B_G16_C17AAAAA00690.17 AA00
2252iro-m9_B_G16_C17AAAAA00640.17 AA00
2262iro-m10_B_C17_U18AAAAA00410.31 AA00
2272iro-m11_B_C17_U18AAAAA00600.29 AA00
2282iro-m12_B_C17_U18AAAAA00580.30 AA00
2292iro-m13_B_C17_U18AAAAA00630.28 AA00
2302iro-m14_B_C17_U18AAAAA00410.33 AA00
2312iro-m15_B_C17_U18AAAAA00840.21 AA00
2322iro-m1_B_C17_U18AAAAA00550.31 AA00
2332iro-m2_B_C17_U18AAAAA00570.30 AA00
2342iro-m3_B_C17_U18AAAAA00590.30 AA00
2352iro-m4_B_C17_U18AAAAA00490.29 AA00
2362iro-m5_B_C17_U18AAAAA00620.32 AA00
2372iro-m6_B_C17_U18AAAAA00580.30 AA00
2382iro-m7_B_C17_U18AAAAA00610.28 AA00
2392iro-m8_B_C17_U18AAAAA00570.31 AA00
2402iro-m9_B_C17_U18AAAAA00660.26 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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