Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Polymerase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2imw_S_DG1801_DG1802 | BBB | BB00 | 68 | 0.33 |
| 02 | 2imw_S_DG1802_DG1803 | BBB | BB00 | 87 | 0.23 |
| 03 | 2imw_S_DG1803_DG1804 | B12 | BB04 | 72 | 0.27 |
| 04 | 2imw_S_DG1804_DG1805 | BBB | BB00 | 94 | 0.13 |
| 05 | 2imw_S_DG1805_DA1806 | B12 | BB04 | 74 | 0.14 |
| 06 | 2imw_S_DA1806_DA1807 | BBB | BB00 | 80 | 0.26 |
| 07 | 2imw_S_DA1807_DG1808 | BBB | BB00 | 92 | 0.21 |
| 08 | 2imw_S_DG1808_DG1809 | B12 | BB04 | 93 | 0.11 |
| 09 | 2imw_S_DG1809_DA1810 | BBB | BB00 | 92 | 0.19 |
| 10 | 2imw_S_DA1810_DT1811 | BBB | BB00 | 62 | 0.20 |
| 11 | 2imw_S_DT1811_DT1812 | BBB | BB01 | 80 | 0.21 |
| 12 | 2imw_S_DT1812_DC1813 | B-A | BA01 | 19 | 0.28 |
| 13 | 2imw_T_DT1904_DA1905 | NAN | NANT | 0 | 0.91 |
| 14 | 2imw_T_DA1905_DG1906 | NAN | NANT | 0 | 2.39 |
| 15 | 2imw_T_DG1906_DA1907 | BBB | BB00 | 76 | 0.31 |
| 16 | 2imw_T_DA1907_DA1908 | BB2 | BB07 | 58 | 0.26 |
| 17 | 2imw_T_DA1908_DT1909 | BBB | BB00 | 84 | 0.23 |
| 18 | 2imw_T_DT1909_DC1910 | B12 | BB04 | 75 | 0.20 |
| 19 | 2imw_T_DC1910_DC1911 | BBB | BB00 | 42 | 0.23 |
| 20 | 2imw_T_DC1911_DT1912 | BBB | BB00 | 50 | 0.31 |
| 21 | 2imw_T_DT1912_DT1913 | BBB | BB00 | 80 | 0.17 |
| 22 | 2imw_T_DT1913_DC1914 | BBB | BB00 | 88 | 0.12 |
| 23 | 2imw_T_DC1914_DC1915 | BBB | BB00 | 65 | 0.25 |
| 24 | 2imw_T_DC1915_DC1916 | BBB | BB01 | 83 | 0.21 |
| 25 | 2imw_T_DC1916_DC1917 | BBB | BB00 | 56 | 0.18 |
| 26 | 2imw_T_DC1917_DC1918 | BB2 | BB07 | 33 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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