DNATCO v4.1: results

Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms

Results of the assignment of 261 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2il9_A_C6003_U6004	AAA	AA00	46	0.31	AA00
002	2il9_A_U6004_G6005	AAw	AA10	16	0.22	AA10
003	2il9_A_G6005_A6006	NAN	NANT	0	0.81	AA10
004	2il9_A_A6006_C6007	AAA	AA00	50	0.34	AA00
005	2il9_A_C6007_U6008	AAA	AA00	26	0.42	AA00
006	2il9_A_U6008_A6009	AAA	AA00	66	0.25	AA00
007	2il9_A_A6009_U6010	AAA	AA00	76	0.23	AA00
008	2il9_A_U6010_G6011	NAN	NANT	0	0.93	AA13
009	2il9_A_G6011_U6012	NAN	NANT	0	2.31	OP09
010	2il9_A_U6012_G6013	NAN	NANT	0	1.11	AA08
011	2il9_A_G6013_A6014	NAN	NANT	0	0.91	OP04
012	2il9_A_A6014_U6015	NAN	NANT	0	0.96	IC07
013	2il9_A_U6015_C6016	NAN	NANT	0	0.79	AA05
014	2il9_A_C6016_U6017	AAw	AA01	67	0.24	AA01
015	2il9_A_U6017_U6018	NAN	NANT	0	0.83	AA06
016	2il9_A_U6018_A6019	NAN	NANT	0	0.73	AA04
017	2il9_A_A6019_U6020	AAA	AA00	72	0.23	AA00
018	2il9_A_U6020_U6021	AAA	AA08	74	0.28	AA08
019	2il9_A_U6021_A6022	AAA	AA00	65	0.30	AA00
020	2il9_A_A6022_A6023	AAu	AA12	77	0.26	AA12
021	2il9_A_A6023_A6024	AAw	AA01	79	0.23	AA01
022	2il9_A_A6024_A6025	AAA	AA00	49	0.29	AA00
023	2il9_A_A6025_U6026	AAA	AA00	79	0.34	AA00
024	2il9_A_U6026_U6027	AAA	AA08	64	0.33	AA08
025	2il9_A_U6027_A6028	AAA	AA00	77	0.18	AA00
026	2il9_A_A6028_G6029	AAA	AA00	54	0.22	AA00
027	2il9_A_G6029_G6030	NAN	NANT	0	1.21	AA11
028	2il9_A_G6030_U6031	NAN	NANT	0	0.52	AA07
029	2il9_A_U6031_U6032	AAu	AA07	14	0.67	AA07
030	2il9_A_U6032_A6033	NAN	NANT	0	0.57	AA09
031	2il9_A_A6033_A6034	AAA	AA00	17	0.46	AA00
032	2il9_A_A6034_A6035	NAN	NANT	0	0.63	AA04
033	2il9_A_C6039_G6040	NAN	NANT	0	2.04	OP27
034	2il9_A_G6040_A6041	AAA	AA08	41	0.42	AA08
035	2il9_A_A6041_G6042	AAA	AA00	49	0.33	AA00
036	2il9_A_G6042_G6043	AAA	AA00	33	0.35	AA00
037	2il9_A_G6043_U6044	AAw	AA01	63	0.37	AA01
038	2il9_A_U6044_U6045	AAA	AA08	19	0.48	AA08
039	2il9_A_U6045_A6046	NAN	NANT	0	1.31	OP06
040	2il9_A_A6046_A6047	NAN	NANT	0	1.28	OP05
041	2il9_A_A6047_A6048	AAA	AA00	14	0.40	AA00
042	2il9_A_A6048_A6049	NAN	NANT	0	1.11	OP17
043	2il9_A_A6049_A6050	AAA	AA09	80	0.18	AA09
044	2il9_A_A6050_U6051	AAw	AA05	76	0.24	AA05
045	2il9_A_U6051_A6052	AAA	AA00	38	0.24	AA00
046	2il9_A_A6052_G6053	AAA	AA00	66	0.19	AA00
047	2il9_A_G6053_U6054	AAA	AA00	87	0.16	AA00
048	2il9_A_U6054_U6055	AAA	AA00	48	0.17	AA00
049	2il9_A_U6055_U6056	AAA	AA00	59	0.13	AA00
050	2il9_A_U6056_U6057	AAu	AA12	68	0.37	AA12
051	2il9_A_U6057_A6058	AAA	AA08	64	0.39	AA08
052	2il9_A_A6058_A6059	AAw	AA10	23	0.36	AA10
053	2il9_A_A6059_U6060	AAA	AA08	49	0.48	AA08
054	2il9_A_U6060_A6061	NAN	NANT	0	0.42	AA01
055	2il9_A_A6061_U6062	NAN	NANT	0	0.52	OP04
056	2il9_A_U6062_U6063	NAN	NANT	0	1.22	IC04
057	2il9_A_U6063_G6064	NAN	NANT	0	0.56	AA06
058	2il9_A_G6064_C6065	AAA	AA08	41	0.46	AA08
059	2il9_A_C6065_U6066	AAA	AA00	23	0.39	AA00
060	2il9_A_U6066_A6067	AAw	AA01	26	0.36	AA01
061	2il9_A_A6067_U6068	NAN	NANT	0	0.76	AA07
062	2il9_A_U6068_A6069	AAA	AA00	81	0.18	AA00
063	2il9_A_A6069_G6070	AAA	AA00	60	0.13	AA00
064	2il9_A_G6070_U6071	AAu	AA12	39	0.52	AA12
065	2il9_A_A6075_G6076	NAN	NANT	0	0.82	AA01
066	2il9_A_G6076_A6077	NAN	NANT	0	1.38	IC04
067	2il9_A_A6077_G6078	AAw	AA05	33	0.36	AA05
068	2il9_A_G6078_G6079	AAw	AA01	64	0.25	AA01
069	2il9_A_G6079_U6080	NAN	NANT	0	0.88	IC03
070	2il9_A_U6080_C6081	NAN	NANT	0	0.67	AA08
071	2il9_A_C6081_U6082	AAA	AA00	19	0.53	AA00
072	2il9_A_U6082_U6083	NAN	NANT	0	2.64	OP04
073	2il9_A_U6083_G6084	AAw	AA05	20	0.60	AA05
074	2il9_A_A6084.C_A6084.D	SYN	AAS1	33	0.43	AAS1
075	2il9_A_A6084.D_A6084.E	AAA	AA00	27	0.28	AA00
076	2il9_A_A6084.E_G6084.F	NAN	NANT	0	1.07	AA08
077	2il9_A_C6084.A_G6084.B	NAN	NANT	0	0.76	AA00
078	2il9_A_G6084.B_A6084.C	NAN	NANT	0	2.08	IC03
079	2il9_A_G6084.F_C6095	AAA	AA00	82	0.18	AA00
080	2il9_A_G6084_C6084.A	NAN	NANT	0	0.73	AA06
081	2il9_A_C6095_U6096	AAA	AA00	79	0.21	AA00
082	2il9_A_U6096_U6097	NAN	NANT	0	1.62	OP17
083	2il9_A_U6097_A6098	AAu	AA12	59	0.43	AA12
084	2il9_A_A6098_C6099	AAA	AA00	72	0.33	AA00
085	2il9_A_C6099_C6100	AAA	AA00	88	0.29	AA00
086	2il9_A_C6100_A6101	NAN	NANT	0	0.74	OP04
087	2il9_A_A6101_C6102	AAA	AA00	22	0.29	AA00
088	2il9_A_C6102_A6103	AAA	AA00	30	0.32	AA00
089	2il9_A_A6103_C6104	AAA	AA08	68	0.24	AA08
090	2il9_A_C6104_A6105	AAA	AA00	26	0.40	AA00
091	2il9_A_A6105_A6106	NAN	NANT	0	1.13	OP08
092	2il9_A_A6106_G6107	AAA	AA00	69	0.22	AA00
093	2il9_A_G6107_A6108	AAA	AA00	80	0.21	AA00
094	2il9_A_A6108_U6109	AAA	AA00	83	0.20	AA00
095	2il9_A_U6109_G6110	AAw	AA06	58	0.35	AA06
096	2il9_A_G6110_G6111	AAA	AA08	64	0.41	AA08
097	2il9_A_G6111_A6112	AAA	AA00	74	0.32	AA00
098	2il9_A_A6112_C6113	AAA	AA08	79	0.26	AA08
099	2il9_A_C6113_C6114	AAA	AA08	71	0.30	AA08
100	2il9_A_C6114_G6115	NAN	NANT	0	1.91	OP31
101	2il9_A_G6115_G6116	AAA	AA08	44	0.40	AA08
102	2il9_A_G6116_A6117	AAA	AA00	68	0.33	AA00
103	2il9_A_A6117_G6118	AAA	AA00	34	0.39	AA00
104	2il9_A_G6118_C6119	AAA	AA00	20	0.22	AA00
105	2il9_A_A6119.B_A6119.C	AAA	AA00	58	0.30	AA00
106	2il9_A_A6119.C_A6119.D	AAA	AA00	38	0.33	AA00
107	2il9_A_A6119.D_G6119.E	AAA	AA08	25	0.71	AA08
108	2il9_A_C6119_G6119.A	AAA	AA00	19	0.25	AA00
109	2il9_A_G6119.A_A6119.B	OPN	OP03	78	0.15	OP03
110	2il9_A_G6119.E_C6124	AAA	AA00	63	0.19	AA00
111	2il9_A_C6124_U6125	NAN	NANT	0	0.68	IC07
112	2il9_A_U6125_C6126	AAA	AA08	39	0.52	AA08
113	2il9_A_C6126_C6127	AAA	AA00	82	0.22	AA00
114	2il9_A_C6127_A6128	AAA	AA00	88	0.22	AA00
115	2il9_A_A6128_A6129	AAA	AA00	41	0.34	AA00
116	2il9_A_A6129_U6130	NAN	NANT	0	2.36	OP21
117	2il9_A_U6130_A6131	NAN	NANT	0	0.74	OP20
118	2il9_A_A6131_U6132	NAN	NANT	0	0.67	AA01
119	2il9_A_U6132_C6133	AAA	AA08	78	0.20	AA08
120	2il9_A_C6133_U6134	AAA	AA00	54	0.30	AA00
121	2il9_A_U6134_A6135	AAA	AA08	66	0.35	AA08
122	2il9_A_A6135_G6136	NAN	NANT	0	0.78	AB02
123	2il9_A_G6136_U6137	AAA	AA08	90	0.20	AA08
124	2il9_A_U6137_G6138	AAA	AA08	77	0.39	AA08
125	2il9_A_G6138_U6139	AAw	AA06	78	0.31	AA06
126	2il9_A_U6139_A6140	AAA	AA00	16	0.39	AA00
127	2il9_A_A6140_C6141	AAw	AA01	70	0.23	AA01
128	2il9_A_C6141_C6142	AAw	AA06	76	0.46	AA06
129	2il9_A_C6142_C6143	AAA	AA08	64	0.34	AA08
130	2il9_A_C6143_U6144	AAA	AA00	75	0.23	AA00
131	2il9_A_U6144_C6145	AAA	AA00	56	0.27	AA00
132	2il9_A_C6145_G6146	AAA	AA00	82	0.22	AA00
133	2il9_M_C6003_U6004	AAA	AA00	36	0.40	AA00
134	2il9_M_U6004_G6005	AAw	AA06	74	0.30	AA06
135	2il9_M_G6005_A6006	NAN	NANT	0	0.80	AA12
136	2il9_M_A6006_C6007	AAw	AA11	52	0.51	AA11
137	2il9_M_C6007_U6008	NAN	NANT	0	0.65	AA06
138	2il9_M_U6008_A6009	NAN	NANT	0	0.69	AA01
139	2il9_M_A6009_U6010	AAA	AA08	48	0.63	AA08
140	2il9_M_U6010_G6011	NAN	NANT	0	0.57	AA04
141	2il9_M_G6011_U6012	NAN	NANT	0	1.55	OP26
142	2il9_M_U6012_G6013	NAN	NANT	0	0.93	AA13
143	2il9_M_G6013_A6014	NAN	NANT	0	0.83	AA09
144	2il9_M_A6014_U6015	AAw	AA01	32	0.41	AA01
145	2il9_M_U6015_C6016	NAN	NANT	0	0.95	AA06
146	2il9_M_C6016_U6017	AAw	AA11	34	0.52	AA11
147	2il9_M_U6017_U6018	AAA	AA00	15	0.62	AA00
148	2il9_M_U6018_A6019	AAA	AA00	85	0.25	AA00
149	2il9_M_A6019_U6020	AAu	AA12	71	0.42	AA12
150	2il9_M_U6020_U6021	AAA	AA04	35	0.64	AA04
151	2il9_M_U6021_A6022	AAA	AA00	88	0.22	AA00
152	2il9_M_A6022_A6023	AAA	AA00	40	0.28	AA00
153	2il9_M_A6023_A6024	AAw	AA01	68	0.25	AA01
154	2il9_M_A6024_A6025	AAA	AA00	48	0.30	AA00
155	2il9_M_A6025_U6026	AAA	AA00	85	0.15	AA00
156	2il9_M_U6026_U6027	AAA	AA00	48	0.27	AA00
157	2il9_M_U6027_A6028	AAA	AA00	92	0.17	AA00
158	2il9_M_A6028_G6029	AAA	AA00	89	0.29	AA00
159	2il9_M_G6029_G6030	OPN	OP07	38	0.38	OP07
160	2il9_M_G6030_U6031	NAN	NANT	0	1.11	AA11
161	2il9_M_U6031_U6032	NAN	NANT	0	1.72	BA16
162	2il9_M_U6032_A6033	AAw	AA11	36	0.49	AA11
163	2il9_M_A6033_A6034	AAA	AA00	47	0.36	AA00
164	2il9_M_A6034_A6035	AAA	AA09	67	0.22	AA09
165	2il9_M_A6035_U6036	NAN	NANT	0	1.98	OP01
166	2il9_M_C6039_G6040	AAw	AA01	24	0.57	AA01
167	2il9_M_G6040_A6041	AAw	AA01	16	0.45	AA01
168	2il9_M_A6041_G6042	AAw	AA06	69	0.42	AA06
169	2il9_M_G6042_G6043	AAA	AA04	23	0.53	AA04
170	2il9_M_G6043_U6044	AAA	AA00	33	0.46	AA00
171	2il9_M_U6044_U6045	AAA	AA08	62	0.29	AA08
172	2il9_M_U6045_A6046	NAN	NANT	0	1.40	OP06
173	2il9_M_A6046_A6047	NAN	NANT	0	1.06	OP04
174	2il9_M_A6047_A6048	AAA	AA00	48	0.36	AA00
175	2il9_M_A6048_A6049	NAN	NANT	0	0.57	OP29
176	2il9_M_A6049_A6050	AAA	AA00	51	0.21	AA00
177	2il9_M_A6050_U6051	AAw	AA05	28	0.45	AA05
178	2il9_M_U6051_A6052	AAA	AA00	61	0.19	AA00
179	2il9_M_A6052_G6053	AAA	AA00	66	0.23	AA00
180	2il9_M_G6053_U6054	AAA	AA00	81	0.22	AA00
181	2il9_M_U6054_U6055	AAA	AA08	83	0.29	AA08
182	2il9_M_U6055_U6056	NAN	NANT	0	0.43	AA02
183	2il9_M_U6056_U6057	NAN	NANT	0	0.46	AAS1
184	2il9_M_U6057_A6058	AAA	AA08	56	0.26	AA08
185	2il9_M_A6058_A6059	AAA	AA08	48	0.43	AA08
186	2il9_M_A6059_U6060	AAu	AA12	67	0.24	AA12
187	2il9_M_U6060_A6061	AAw	AA01	27	0.44	AA01
188	2il9_M_A6061_U6062	AAw	AA10	6	0.48	AA10
189	2il9_M_U6062_U6063	AAw	AA01	34	0.39	AA01
190	2il9_M_U6063_G6064	AAA	AA08	16	0.57	AA08
191	2il9_M_G6064_C6065	AAu	AA12	60	0.29	AA12
192	2il9_M_C6065_U6066	NAN	NANT	0	0.59	AA05
193	2il9_M_U6066_A6067	NAN	NANT	0	0.99	AA13
194	2il9_M_A6075_G6076	NAN	NANT	0	1.08	OP11
195	2il9_M_G6076_A6077	NAN	NANT	0	0.56	AA06
196	2il9_M_A6077_G6078	NAN	NANT	0	0.93	AA04
197	2il9_M_G6078_G6079	AAw	AA01	36	0.59	AA01
198	2il9_M_G6079_U6080	AAA	AA08	75	0.25	AA08
199	2il9_M_U6080_C6081	AAw	AA05	50	0.52	AA05
200	2il9_M_C6081_U6082	NAN	NANT	0	0.63	AA08
201	2il9_M_U6082_U6083	NAN	NANT	0	0.45	OP11
202	2il9_M_U6083_G6084	AAA	AA08	64	0.41	AA08
203	2il9_M_A6084.C_A6084.D	AAA	AA08	74	0.25	AA08
204	2il9_M_A6084.D_A6084.E	AAA	AA09	56	0.26	AA09
205	2il9_M_A6084.E_G6084.F	AAw	AA05	73	0.34	AA05
206	2il9_M_C6084.A_G6084.B	AAA	AA08	87	0.16	AA08
207	2il9_M_G6084.B_A6084.C	OPN	OP03	84	0.17	OP03
208	2il9_M_G6084.F_C6095	AAA	AA00	39	0.24	AA00
209	2il9_M_G6084_C6084.A	AAw	AA01	53	0.39	AA01
210	2il9_M_C6095_U6096	AAA	AA00	21	0.45	AA00
211	2il9_M_U6096_U6097	NAN	NANT	0	1.63	OP17
212	2il9_M_U6097_A6098	AAA	AA04	40	0.46	AA04
213	2il9_M_A6098_C6099	AAA	AA00	85	0.23	AA00
214	2il9_M_C6099_C6100	AAA	AA00	84	0.24	AA00
215	2il9_M_C6100_A6101	NAN	NANT	0	0.77	OP04
216	2il9_M_A6101_C6102	AAA	AA09	58	0.37	AA09
217	2il9_M_C6102_A6103	NAN	NANT	0	0.42	AA09
218	2il9_M_A6103_C6104	AAA	AA08	37	0.47	AA08
219	2il9_M_C6104_A6105	AAA	AA00	32	0.40	AA00
220	2il9_M_A6105_A6106	NAN	NANT	0	0.89	OP08
221	2il9_M_A6106_G6107	AAA	AA00	82	0.17	AA00
222	2il9_M_G6107_A6108	AAA	AA00	80	0.26	AA00
223	2il9_M_A6108_U6109	AAA	AA00	55	0.28	AA00
224	2il9_M_U6109_G6110	AAA	AA00	58	0.39	AA00
225	2il9_M_G6110_G6111	AAA	AA00	75	0.37	AA00
226	2il9_M_G6111_A6112	AAA	AA00	80	0.24	AA00
227	2il9_M_A6112_C6113	AAA	AA00	60	0.32	AA00
228	2il9_M_C6113_C6114	NAN	NANT	0	0.77	AA10
229	2il9_M_C6114_G6115	NAN	NANT	0	1.53	AA01
230	2il9_M_G6115_G6116	AAA	AA08	69	0.35	AA08
231	2il9_M_G6116_A6117	AAw	AA01	68	0.24	AA01
232	2il9_M_A6117_G6118	AAA	AA08	86	0.22	AA08
233	2il9_M_G6118_C6119	AAu	AA12	14	0.33	AA12
234	2il9_M_A6119.B_A6119.C	AAA	AA00	53	0.31	AA00
235	2il9_M_A6119.C_A6119.D	AAA	AA00	40	0.33	AA00
236	2il9_M_A6119.D_G6119.E	AAA	AA08	11	0.78	AA08
237	2il9_M_C6119_G6119.A	NAN	NANT	0	0.49	AA04
238	2il9_M_G6119.A_A6119.B	OPN	OP03	64	0.14	OP03
239	2il9_M_G6119.E_C6124	AAA	AA08	61	0.37	AA08
240	2il9_M_C6124_U6125	AAA	AA00	49	0.35	AA00
241	2il9_M_U6125_C6126	AAA	AA00	74	0.19	AA00
242	2il9_M_C6126_C6127	AAA	AA08	77	0.26	AA08
243	2il9_M_C6127_A6128	AAA	AA00	90	0.22	AA00
244	2il9_M_A6128_A6129	AAA	AA00	48	0.30	AA00
245	2il9_M_A6129_U6130	NAN	NANT	0	0.61	OP01
246	2il9_M_U6130_A6131	NAN	NANT	0	1.69	OP16
247	2il9_M_A6131_U6132	NAN	NANT	0	0.68	BA10
248	2il9_M_U6132_C6133	AAA	AA00	86	0.14	AA00
249	2il9_M_C6133_U6134	AAA	AA00	62	0.27	AA00
250	2il9_M_U6134_A6135	AAA	AA00	14	0.31	AA00
251	2il9_M_A6135_G6136	NAN	NANT	0	0.79	OP24
252	2il9_M_G6136_U6137	AAA	AA09	48	0.31	AA09
253	2il9_M_U6137_G6138	AAA	AA02	9	0.53	AA02
254	2il9_M_G6138_U6139	AAw	AA01	68	0.21	AA01
255	2il9_M_U6139_A6140	AAw	AA05	42	0.34	AA05
256	2il9_M_A6140_C6141	AAA	AA08	64	0.39	AA08
257	2il9_M_C6141_C6142	AAw	AA05	79	0.30	AA05
258	2il9_M_C6142_C6143	AAu	AA07	25	0.55	AA07
259	2il9_M_C6143_U6144	AAu	AA12	29	0.59	AA12
260	2il9_M_U6144_C6145	AAA	AA00	61	0.39	AA00
261	2il9_M_C6145_G6146	AAA	AA04	29	0.53	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

Results of the assignment of 261 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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