Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position and an abasic site analog at the target base partner position
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ibt_B_DG1_DT2 | NAN | NANT | 0 | 0.47 |
| 02 | 2ibt_B_DT2_DT3 | B-A | BA17 | 89 | 0.15 |
| 03 | 2ibt_B_DT3_DC4 | AAA | AA02 | 15 | 0.43 |
| 04 | 2ibt_B_DC4_DG5 | NAN | NANT | 0 | 0.44 |
| 05 | 2ibt_B_DG5_2PR6 | NAN | NANT | 0 | 0.99 |
| 06 | 2ibt_B_2PR6_DT7 | NAN | NANT | 0 | 1.78 |
| 07 | 2ibt_B_DT7_DG8 | BBw | BB16 | 25 | 0.48 |
| 08 | 2ibt_B_DG8_DT9 | B-A | BA05 | 81 | 0.22 |
| 09 | 2ibt_B_DT9_DC10 | B-A | BA05 | 37 | 0.44 |
| 10 | 2ibt_C_DG11_DA12 | BBw | BB16 | 24 | 0.71 |
| 11 | 2ibt_C_DA12_DC13 | BBB | BB00 | 50 | 0.47 |
| 12 | 2ibt_C_DC13_DA14 | B-A | BA13 | 51 | 0.42 |
| 13 | 2ibt_C_DC16_DG17 | BB2 | BB07 | 40 | 0.22 |
| 14 | 2ibt_C_DG17_6MA18 | BB2 | BB07 | 92 | 0.27 |
| 15 | 2ibt_C_6MA18_DA19 | B-A | BA05 | 59 | 0.29 |
| 16 | 2ibt_C_DA19_DC20 | AAA | AA02 | 52 | 0.40 |
| 17 | 2ibt_E_DG1_DT2 | BBB | BB00 | 60 | 0.23 |
| 18 | 2ibt_E_DT2_DT3 | B-A | BA17 | 86 | 0.17 |
| 19 | 2ibt_E_DT3_DC4 | AAA | AA02 | 14 | 0.42 |
| 20 | 2ibt_E_DC4_DG5 | NAN | NANT | 0 | 0.44 |
| 21 | 2ibt_E_DG5_2PR6 | NAN | NANT | 0 | 0.96 |
| 22 | 2ibt_E_2PR6_DT7 | NAN | NANT | 0 | 1.51 |
| 23 | 2ibt_E_DT7_DG8 | NAN | NANT | 0 | 0.67 |
| 24 | 2ibt_E_DG8_DT9 | BBB | BB01 | 88 | 0.17 |
| 25 | 2ibt_E_DT9_DC10 | NAN | NANT | 0 | 0.39 |
| 26 | 2ibt_F_DG11_DA12 | BB2 | BB07 | 57 | 0.31 |
| 27 | 2ibt_F_DA12_DC13 | BBB | BB00 | 66 | 0.33 |
| 28 | 2ibt_F_DC13_DA14 | B-A | BA10 | 78 | 0.27 |
| 29 | 2ibt_F_DC16_DG17 | BB2 | BB07 | 42 | 0.21 |
| 30 | 2ibt_F_DG17_6MA18 | BB2 | BB07 | 89 | 0.29 |
| 31 | 2ibt_F_6MA18_DA19 | B-A | BA05 | 63 | 0.28 |
| 32 | 2ibt_F_DA19_DC20 | A-B | AB01 | 43 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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