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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ibs_B_DG1_DT2A-BAB05580.33 AB05
022ibs_B_DT2_DT3B-ABA17790.18 BA17
032ibs_B_DT3_DC4AAAAA02210.42 AA02
042ibs_B_DC4_DG5NANNANT00.43 AB03
052ibs_B_DG5_2PR6NANNANT00.98 OP13
062ibs_B_2PR6_DT7NANNANT01.78 OP31
072ibs_B_DT7_DG8ICLIC06390.44 IC06
082ibs_B_DG8_DT9BBBBB01660.26 BB01
092ibs_B_DT9_DC10B-ABA08520.26 BA08
102ibs_C_DG11_DA12BBBBB00290.37 BB00
112ibs_C_DA12_DC13BBBBB00620.45 BB00
122ibs_C_DC13_DA14B-ABA13200.51 BA13
132ibs_C_DA14_DT15NANNANT01.08 AA11
142ibs_C_DT15_DC16NANNANT00.61 BB16
152ibs_C_DC16_DG17BB2BB07510.21 BB07
162ibs_C_DG17_6MA18BB2BB07880.23 BB07
172ibs_C_6MA18_DA19B-ABA05730.24 BA05
182ibs_C_DA19_DC20AAAAA02720.36 AA02
192ibs_E_DG1_DT2BBBBB00560.28 BB00
202ibs_E_DT2_DT3B-ABA17760.16 BA17
212ibs_E_DT3_DC4AAAAA02200.42 AA02
222ibs_E_DC4_DG5NANNANT00.46 AB03
232ibs_E_DG5_2PR6NANNANT00.98 OP13
242ibs_E_2PR6_DT7NANNANT01.78 OP31
252ibs_E_DT7_DG8ICLIC06330.45 IC06
262ibs_E_DG8_DT9B-ABA05820.15 BA05
272ibs_E_DT9_DC10BBBBB01250.39 BB01
282ibs_F_DG11_DA12B12BB04880.17 BB04
292ibs_F_DA12_DC13BBBBB00700.40 BB00
302ibs_F_DC13_DA14B-ABA13390.41 BA13
312ibs_F_DA14_DT15NANNANT00.86 IC03
322ibs_F_DT15_DC16BBwBB16140.60 BB16
332ibs_F_DC16_DG17BB2BB07510.22 BB07
342ibs_F_DG17_6MA18BB2BB07890.22 BB07
352ibs_F_6MA18_DA19B-ABA05780.24 BA05
362ibs_F_DA19_DC20A-BAB01440.32 AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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