Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of ribosomal protein L1-mRNA complex at 2.1 resolution.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2hw8_B_G2_G3 | AAA | AA00 | 67 | 0.18 |
| 02 | 2hw8_B_G3_G4 | AAw | AA01 | 83 | 0.21 |
| 03 | 2hw8_B_G4_G5 | AAA | AA00 | 65 | 0.21 |
| 04 | 2hw8_B_G5_U6 | AAA | AA00 | 87 | 0.12 |
| 05 | 2hw8_B_U6_G7 | AAA | AA00 | 95 | 0.13 |
| 06 | 2hw8_B_G7_A8 | AAA | AA08 | 90 | 0.19 |
| 07 | 2hw8_B_A8_A9 | AAA | AA00 | 92 | 0.12 |
| 08 | 2hw8_B_A9_G10 | AAA | AA00 | 84 | 0.15 |
| 09 | 2hw8_B_G10_G11 | AAA | AA08 | 76 | 0.38 |
| 10 | 2hw8_B_G11_A12 | NAN | NANT | 0 | 0.59 |
| 11 | 2hw8_B_A12_G13 | NAN | NANT | 0 | 1.09 |
| 12 | 2hw8_B_G13_G14 | AAA | AA00 | 60 | 0.26 |
| 13 | 2hw8_B_G14_C15 | AAA | AA00 | 93 | 0.17 |
| 14 | 2hw8_B_C15_U16 | AAA | AA00 | 82 | 0.29 |
| 15 | 2hw8_B_U16_U17 | NAN | NANT | 0 | 0.43 |
| 16 | 2hw8_B_U17_C18 | NAN | NANT | 0 | 2.15 |
| 17 | 2hw8_B_C18_G19 | ZZZ | ZZ1S | 10 | 0.26 |
| 18 | 2hw8_B_G19_G20 | NAN | NANT | 0 | 0.47 |
| 19 | 2hw8_B_G20_C21 | AAA | AA00 | 85 | 0.13 |
| 20 | 2hw8_B_C21_C22 | AAA | AA00 | 81 | 0.19 |
| 21 | 2hw8_B_C22_G23 | AAA | AA00 | 83 | 0.20 |
| 22 | 2hw8_B_G23_C24 | AAA | AA00 | 83 | 0.22 |
| 23 | 2hw8_B_C24_G25 | NAN | NANT | 0 | 0.52 |
| 24 | 2hw8_B_G25_A26 | NAN | NANT | 0 | 1.49 |
| 25 | 2hw8_B_A26_A27 | A-B | AB05 | 92 | 0.26 |
| 26 | 2hw8_B_A27_A28 | OPN | OP11 | 40 | 0.61 |
| 27 | 2hw8_B_A28_C29 | AAA | AA08 | 45 | 0.55 |
| 28 | 2hw8_B_C29_U30 | AAA | AA00 | 84 | 0.23 |
| 29 | 2hw8_B_U30_U31 | AAA | AA00 | 57 | 0.23 |
| 30 | 2hw8_B_U31_C32 | AAA | AA08 | 73 | 0.31 |
| 31 | 2hw8_B_C32_A33 | AAw | AA01 | 84 | 0.16 |
| 32 | 2hw8_B_A33_C34 | AAA | AA08 | 76 | 0.18 |
| 33 | 2hw8_B_C34_C35 | AAw | AA01 | 95 | 0.12 |
| 34 | 2hw8_B_C35_C36 | AAA | AA00 | 73 | 0.20 |
| 35 | 2hw8_B_C36_C37 | AAA | AA00 | 90 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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