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Conformers: ABBIImiBZICOPNSYNN
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IHF bound to doubly nicked DNA

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ht0_C_DA39_DT38BBBBB01350.31 BB01
022ht0_C_DA40_DA39B-ABA08770.29 BA08
032ht0_C_DA41_DA40BBBBB00950.13 BB00
042ht0_C_DC42_DA41A-BAB05790.21 AB05
052ht0_C_DA43_DC42NANNANT00.29 BA10
062ht0_C_DA44_DA43BBBBB00870.12 BB00
072ht0_C_DC45_DA44BB2BB07250.39 BB07
082ht0_C_DG46_DC45BBBBB00680.23 BB00
092ht0_C_DT47_DG46B12BB04800.24 BB04
102ht0_C_DG48_DT47BBBBB00890.14 BB00
112ht0_C_DG49_DG48BBBBB00570.33 BB00
122ht0_C_DC50_DG49A-BAB05880.19 AB05
132ht0_D_DG17_DC16BBwBB02470.26 BB02
142ht0_D_DG18_DG17B12BB04700.15 BB04
152ht0_D_DT19_DG18BBBBB00470.36 BB00
162ht0_D_DT20_DT19BBBBB01680.17 BB01
172ht0_D_DT21_DT20BBBBB01670.25 BB01
182ht0_D_DT22_DT21BBBBB01750.14 BB01
192ht0_D_DT23_DT22BBBBB01730.24 BB01
202ht0_D_DT24_DT23BBBBB01850.10 BB01
212ht0_D_DC25_DT24BBBBB00660.23 BB00
222ht0_D_DG26_DC25B12BB04420.23 BB04
232ht0_D_DT27_DG26BB2BB07750.20 BB07
242ht0_D_DA28_DT27BBBBB00760.28 BB00
252ht0_D_DA29_DA28NANNANT00.42 IC06
262ht0_D_DC30_DA29NANNANT00.66 BA16
272ht0_D_DG31_DC30BBBBB00780.18 BB00
282ht0_D_DA32_DG31BBBBB01920.08 BB01
292ht0_D_DA33_DA32BBBBB01810.19 BB01
302ht0_D_DT34_DA33BBBBB00100.31 BB00
312ht0_D_DA35_DT34BBBBB01740.24 BB01
322ht0_D_DG36_DA35B12BB04710.31 BB04
332ht0_D_DT37_DG36BBBBB00520.37 BB00
342ht0_E_DG15_DG16A-BAB05520.26 AB05
352ht0_E_DG16_DC17BBBBB00720.23 BB00
362ht0_E_DC17_DC18B-ABA01740.21 BA01
372ht0_E_DC18_DA19A-BAB03830.26 AB03
382ht0_E_DA19_DA20B12BB04800.15 BB04
392ht0_E_DA20_DA21BBBBB01230.24 BB01
402ht0_E_DA21_DA22BBBBB01770.21 BB01
412ht0_E_DA22_DA23B-ABA05830.19 BA05
422ht0_E_DA23_DA24BBBBB01470.34 BB01
432ht0_E_DA24_DG25BBBBB01770.10 BB01
442ht0_E_DG25_DC26B-ABA05770.14 BA05
452ht0_E_DC26_DA27AAAAA02430.49 AA02
462ht0_E_DA27_DT28NANNANT00.69 ZZ01
472ht0_E_DT28_DT29NANNANT00.80 OP04
482ht0_F_DG30_DC31BBBBB00540.26 BB00
492ht0_F_DC31_DT32BBBBB00770.24 BB00
502ht0_F_DT32_DT33BBBBB01820.14 BB01
512ht0_F_DT33_DA34BBBBB00750.20 BB00
522ht0_F_DA34_DT35BBBBB00900.19 BB00
532ht0_F_DT35_DC36NANNANT00.74 BA10
542ht0_F_DC36_DA37AAAAA02330.29 AA02
552ht0_F_DA37_DA38NANNANT00.44 AB04
562ht0_F_DA38_DT39BBwBB02760.21 BB02
572ht0_F_DT39_DT40BBBBB01380.28 BB01
582ht0_F_DT40_DT41BBBBB01730.11 BB01
592ht0_F_DT41_DG42BBBBB00720.20 BB00
602ht0_F_DG42_DT43BBBBB00660.36 BB00
612ht0_F_DT43_DT44BBBBB00750.23 BB00
622ht0_F_DT44_DG45BB2BB07870.19 BB07
632ht0_F_DG45_DC46BBBBB00780.34 BB00
642ht0_F_DC46_DA47BB2BB07790.22 BB07
652ht0_F_DA47_DC48B-ABA05930.18 BA05
662ht0_F_DC48_DC49A-BAB03660.27 AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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