DNATCO v4.1: results

Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2hoo_A_G9_C10	AAA	AA00	87	0.16	AA00
02	2hoo_A_C10_G11	AAA	AA00	79	0.13	AA00
03	2hoo_A_G11_A12	AAA	AA00	74	0.17	AA00
04	2hoo_A_A12_C13	AAA	AA00	77	0.15	AA00
05	2hoo_A_C13_U14	AAA	AA00	62	0.13	AA00
06	2hoo_A_U14_C15	AAA	AA00	71	0.22	AA00
07	2hoo_A_C15_G16	AAA	AA00	56	0.35	AA00
08	2hoo_A_G16_G17	AAA	AA00	74	0.21	AA00
09	2hoo_A_G17_G18	AAA	AA00	93	0.17	AA00
10	2hoo_A_G18_G19	AAA	AA00	26	0.35	AA00
11	2hoo_A_G19_U20	NAN	NANT	0	0.31	AA06
12	2hoo_A_U20_G21	NAN	NANT	0	1.55	OP24
13	2hoo_A_G21_C22	AAA	AA00	39	0.37	AA00
14	2hoo_A_C22_C23	AAA	AA00	86	0.20	AA00
15	2hoo_A_C23_C24	AAA	AA00	79	0.36	AA00
16	2hoo_A_C24_U25	NAN	NANT	0	1.16	AA13
17	2hoo_A_G29_C30	AAA	AA00	18	0.60	AA00
18	2hoo_A_A34_A35	AAA	AA08	46	0.50	AA08
19	2hoo_A_A35_G36	AAA	AA08	73	0.35	AA08
20	2hoo_A_G36_G37	AAA	AA08	76	0.18	AA08
21	2hoo_A_G37_C38	AAA	AA08	31	0.35	AA08
22	2hoo_A_C38_U39	AAA	AA08	60	0.34	AA08
23	2hoo_A_U39_G40	AAA	AA00	27	0.38	AA00
24	2hoo_A_G40_A41	OPN	OP04	85	0.13	OP04
25	2hoo_A_A41_G42	AAA	AA08	47	0.28	AA08
26	2hoo_A_G42_A43	NAN	NANT	0	0.60	AB04
27	2hoo_A_A43_A44	NAN	NANT	0	1.65	OP31
28	2hoo_A_A44_A45	NAN	NANT	0	1.67	AA06
29	2hoo_A_A47_C48	AAA	AA08	73	0.32	AA08
30	2hoo_A_C48_C49	AAA	AA08	91	0.12	AA08
31	2hoo_A_C49_C50	AAA	AA00	83	0.20	AA00
32	2hoo_A_C50_G51	AAA	AA00	33	0.25	AA00
33	2hoo_A_G51_U52	NAN	NANT	0	0.58	OP01
34	2hoo_A_U52_A53	NAN	NANT	0	1.56	AA01
35	2hoo_A_A53_U54	NAN	NANT	0	1.11	OP29
36	2hoo_A_A56_C57	AAA	AA08	31	0.60	AA08
37	2hoo_A_C57_C58	AAA	AA00	79	0.21	AA00
38	2hoo_A_C58_U59	AAA	AA00	77	0.26	AA00
39	2hoo_A_U59_G60	AAA	AA00	59	0.34	AA00
40	2hoo_A_G60_A61	NAN	NANT	0	0.44	ZZ01
41	2hoo_A_C63_U64	AAA	AA00	57	0.40	AA00
42	2hoo_A_U64_G65	AAA	AA00	53	0.30	AA00
43	2hoo_A_G65_G66	AAA	AA00	68	0.24	AA00
44	2hoo_A_G66_A67	AAw	AA01	18	0.31	AA01
45	2hoo_A_A67_U68	AAA	AA08	36	0.28	AA08
46	2hoo_A_U68_A69	OPN	OP04	68	0.19	OP04
47	2hoo_A_A69_A70	AAA	AA00	67	0.27	AA00
48	2hoo_A_A70_U71	AAA	AA00	36	0.23	AA00
49	2hoo_A_U71_G72	NAN	NANT	0	0.58	OP29
50	2hoo_A_G72_C73	NAN	NANT	0	1.92	AA13
51	2hoo_A_C73_C74	AAA	AA00	38	0.29	AA00
52	2hoo_A_C74_A75	AAA	AA08	84	0.28	AA08
53	2hoo_A_A75_G76	AAA	AA00	17	0.34	AA00
54	2hoo_A_G76_C77	AAA	AA00	52	0.31	AA00
55	2hoo_A_C77_G78	NAN	NANT	0	0.43	ZZ01
56	2hoo_A_G78_U79	NAN	NANT	0	1.73	OP17
57	2hoo_A_U79_A80	NAN	NANT	0	1.45	OP29
58	2hoo_A_A80_G81	AAA	AA08	38	0.40	AA08
59	2hoo_A_G81_G82	AAA	AA00	56	0.22	AA00
60	2hoo_A_G82_G83	AAA	AA00	25	0.41	AA00
61	2hoo_A_G83_A84	AAu	AA07	40	0.34	AA07
62	2hoo_A_A84_A85	NAN	NANT	0	0.50	IC07
63	2hoo_A_A85_G86	B-A	BA10	62	0.33	BA10
64	2hoo_A_G86_U87	AAA	AA00	56	0.09	AA00
65	2hoo_A_U87_C88	AAA	AA00	93	0.10	AA00
66	2hoo_A_C88_G89	AAA	AA00	82	0.25	AA00
67	2hoo_A_G89_C90	AAA	AA03	61	0.28	AA03
68	2hoo_A_C90_A91	NAN	NANT	0	1.11	OP01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible